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Topic 4: Metabolism, Enzymes and Homeostasis Ch.8 -Energy is the capacity to do work or to move matter against opposing forces such as gravity and friction. - There are many forms of energy: Electrical, Mechanical, Chemical, Light and Heat. - First Law of Thermodynamics - Energy can be transferred and transformed, but it cannot be created or destroyed. Metabolism pp.142-160 - Metabolism - The processing of energy and materials (by means of chemical reactions) to maintain existing life and grow. - There are two forms: 1. Catabolism - Destructive metabolism in which complex molecules are broken down into simpler ones, with the liberation of energy. - Catabolic reactions are exergonic because energy is released when the complex molecules are broken down. - E.g. Cellular respiration Metabolism 2. Anabolism - Constructive metabolism in which complex substances are synthesized from simpler ones. -Anabolic reactions are endergonic because energy is consumed (required) to build complicated molecules from simpler ones. -E.g. Protein synthesis from amino acids. How does ATP transfer energy? - The triphosphate tail is the chemical equivalent to a loaded spring (the close packing of the 3 negatively charged phosphate groups are unstable). Fig. 8.8 Metabolism - Most life processes are endergonic and therefore require energy. - Where does this energy come from? -ATP - Adenosine triphosphate - The ATP/ADP cycle is an example of Anabolic and Catabolic processes. Fig. 8.8 How does ATP transfer energy? -The cell taps this energy source by using enzymes to transfer phosphate groups from ATP to other compounds, which are then said to be phosphorylated. - Phosphorylation primes a molecule to undergo some kind of change that performs work, and the molecule of ATP loses its phosphate group in the process. 1 Cellular Respiration pp.167-181 - Cellular Respiration - The most prevalent and efficient catabolic pathway for the production of ATP, in which oxygen is consumed as a reactant along with the organic fuel. - Aerobic respiration - Respiration where oxygen is the final electron acceptor. C6H12O6 + 6O2 6CO2 + 6H2O + Energy Fig. 8.10 Cellular Respiration -Anaerobic respiration - A form of respiration that occurs without oxygen. E.g. For bacteria, the final electron acceptors are sulphate and nitrate not oxygen. E.g. Fermentation in bacteria and yeast also breaks down glucose, but produces carbon dioxide and ethanol. (ATP and Heat) Cellular Respiration - Cellular respiration is composed of three steps: 1. Glycolysis - Occurs in all living cells. May or may not require oxygen. Occurs in the cytoplasm. 2. Kreb’s cycle - A chemical cycle that completes the breakdown of glucose to carbon dioxide. Located in the mitochrondria. 3. Electron transport chain - Electron-carrier molecules located on the inner mitochrondrial membrane move electrons along during reactions. This releases energy used to make ATP. Review of Cellular Respiration Glycolysis Glucose 2 Pyruvate + 2 NADH + 2 ATP Kreb’s Cycle 2 Pyruvate (Acetyl CoA) 8 NADH + 2 FADH2 + 2 ATP + 6 CO2 Fig 9.6 Electron Transport Chain NADH and FADH2 used to create a H+ gradient. Energy released when H+ travels down this gradient is used to make 26 ATP (Oxidative phosphorylation). 2 Diversity of Metabolic Pathways - Some nutritional modes are unique to prokaryotes. -Nutrition refers here to how an organism obtains two resources for synthesizing organic compounds; energy and carbon. - Energy can come from two sources: Fig. 9.16 1. Phototrophs - Use light as an energy source. 2. Chemotrophs – Use reactions with chemicals taken from the environment as an energy source. Diversity of Metabolic Pathways Major Nutritional modes - Carbon can come from two sources: 1. Autotroph – Carbon comes from an inorganic source (i.e. CO2 ). 2. Heterotroph – Carbon comes from an organic source (i.e. glucose). Mode of nutrition Energy source Carbon source Examples Photoautotroph Light CO2 Plants & cyanobacteria Photoheterotroph Light Glucose Some cyanobacteria Chemoautotroph Inorganic molecules CO2 Sulfur bacteria & Chemoheterotroph Glucose Glucose Nitrifying bacteria Animals Most bacteria Enzymes pp.152-156 - Enzymes are proteins that are produced on ribosomes. - Enzymes function as catalysts, chemical agents that change the rate of a reaction without being consumed by the reaction. Enzymes - Enzymes work by lowering the activation energy so that the reaction can happen even at moderate temperatures. - Activation energy – Energy required for a reaction to occur. Fig. 8.13 Fig. 8.12 3 The Specificity of Enzymes -Enzymes are very specific. -Only certain chemicals (substrates) can fit in the active site. -The enzyme binds to its substrate (or substrates) and while the two are joined, the catalytic action of the enzyme converts the substrate to the product of the reaction. Fig. 8.15 Factors Affecting Enzyme Activity 1. Temperature 2. pH Factors Affecting Enzyme Activity 3. Enzyme inhibitors: a) Competitive inhibitors bind to the active site preventing binding of the regular substrate. E.g. DDT b) Noncompetitive inhibitors bind to another part of the enzyme, changing the shape of the binding site. Eg. Penicillin Fig. 8.17 Fig. 8.16 4