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1 FACULTY OF VETERINARY SCIENCE DEPARTMENT OF PARACLINICAL VETERINARY STUDIES ANIMAL HUSBANDRY SECTION APPLIED GENETICS AND BIOSTATISTICS (AH2V02) COURSE OUTLINE I. Genetics Recommended Reading Materials: Note: In full appreciation of the current cost of books in the country I am not by presentation of this list making it a requirement for you to purchase these books. It would however enrich you academically if you could consult these text for in-depth discussion of topics of personal interest. The internet has a host of material on new genetic discoveries, genetic innovations as well as debates and chat rooms on topical genetic issues. You are all strongly encouraged to use all these sources of information to broaden your genetic horizons. 1. Peter J. Russel (1989) Genetics. 2nd Edition. Scott, Foresman and Company. QH430.R87; ISBN 0-673-39843-9 2. Daniel L.Hartl and Andrew G.Clark (1989) Principles of population genetics. 2nd Edition. Sinauer Associates, Inc. QH455.H37; ISBN 0-87893-302-6 3. Dale L Van Vleck, John E. Pollak and Branford E.A. Oltenacu (1987) Genetics for Animal Sciences. W.H. Freeman and Company. QH432.V36; ISBN 0-7167-1800-6 4. Falconer D.S. (1989) Introduction to Quntitative Genetics. 3ed Edition. Longman Scientific and Technical. ISBN 0-582-44195-1 Genetics course outline: Part I -Introduction and Basic principles Why study genetics in veterinary science? Cell division and Chromosome behaviour: Mitosis and Meiosis Roles of Mitosis and Meiosis Similarities and differences between mitosis and meiosis Chromosome numbers in some domestic species PartII -Mendelian genetics: Monohybrid crosses: Mendel’s first law Dihybrid crosses: Mendel’s second law, computating expected ratios using the branch diagram or the product rule of probability approaches Trihybrid crosses: Crossing over, autosomal linkage and chromosomal genetic distances Gene interaction: Pleiotrophy and epistasis Part III -Sex chromosomes, sex linkage, sex determination and associated genetics What are sex chromosomes? Sex linkage genes: Definition in comparison to autosomal linkage, classic examples of sex linked genes, detection in pedigrees Sex determination: Genotypic sex determination systems: X chromosome-autosome balance system (Drosophila), Chromosomal sex determination (Mammals, birds, butterflies/moths and bees) Environmental sex determination: Crocodiles/alligators and in Bonellia Sex-influenced traits and sex limited traits 2 Part IV -Multiple Alleles Historical evidence of multiple alleles (Morgan’s 1912, Alfred Sturtevant 1913) Multiple alleles in the human gene for ABO blood group series Modification of Dominance relationships: Incomplete Dominance and Codominance Part V -Elemen ts of population genetics The Hardy-Weinberg (H-W) Law: Definition and assumptions Determining whether a given population meets H-W expectations using the 2 (Chi-square) goodness of fit test Forces that change genotypic frequencies Forces that change gene/allele frequencies Part VI -Elements of Quantitative genetics What are quantitative traits? The concept of variation and normal distribution The classic model for quantitative traits: P=+A+D+E Genetic parameters: Definition of heritability and repeatability Methods of measuring/computing heritability and repeatability Selection: Natural versus Artificial selection What is artificial selection and what may be its objectives? Artificial selection methods: Their advantages and limitations Response to artificial selection: What is selection response? How is it measured? What factors determine the rate of response to artificial selection? Part VI -Relationships and Mating systems Pedigrees and relationships using path coefficients Inbreeding: Definition, computing inbreeding Linebreeding, Outbreeding and Crossbreeding: Definitions and Applications -Major genes and application of molecular genetics in animal/veterinary science Major genes in livestock: What are major genes? Why are they important? Classic examples of major genes in animals. Molecular genetics in animals: How has applied molecular genetics benefited the animal/veterinary sciences? Examples of how applied molecular genetics has benefited and is expected to benefit animal sciences in future. Ethics with regards genetic manipulation. The genetically modified organisms (GMO) controversy. Part VII 3 Practicals: Practical Title Number 1 Mitosis and meisosis 2 Mendelian genetics I 3 Mendelian genetics II 4 Mendelian genetics III Sex linkage 6 Population Genetics 7 Quantitative Genetics 8 Relationships Scheme of examination Theory Paper Continuous assessment Viva 50% 30% 10% Project 10% Material to be covered during the practical Students to solve mostly meiosis related problems. Students to solve problems on expected genotypic and phenotypic ratios of dihybrid and trihybrid crosses using the branch diagram approach Students to solve problems on expected genotypic and phenotypic ratios of dihybrid and trihybrid crosses using the product rule of probability approach Students to work on problems on partial linkage and chromosomal genetic distances Students to solve problems on the mode of inheritance (autosomal/sex linked) and the nature of the allele causing the observed phenotype (dominant/recessive) given a pedigree. Students to solve problems on the Hardy Weinberg equilibrium. Given a population, to determine the probable force or forces causing deviations from Hardy Weinberg expectations Students to compute heritability and repeatability estimates when presented with different data Students to work on converting pedigree information into “arrow” diagrams. Students will be required to figure out the relationship coefficient between specific individuals in a given pedigree. Students will determine whether specific individuals in a pedigree are inbreed or not, if the former is true, to compute the inbreeding coefficient.