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DNA "The Blueprint of Life“ Discovery the DNA is the Genetic Material for a Cell 1831 Swiss biochemist Friedrich Miescher * Discovered a microscopic substance in the pus of discarded surgical bandages (residue from the nuclei of cells). * Miescher called the substance “nuclein”. (We now call this DNA) 1919 Phoebus Levene identified the base, sugar and phosphate nucleotide unit. Levene suggested that DNA consisted of a string of nucleotide units linked together through the phosphate groups. However, Levene thought the chain was short and the bases repeated in a fixed order. 1937 William Astbury produced the first x-ray diffraction patterns that showed that DNA had a regular structure. Who was awarded the Nobel Prize in Physiology for determining the exact composition of nuclein? 1910Albrecht Kossel * In one of his first experiments, he boiled nuclein and determined that it contained phosphorus and hypoxanthine (a breakdown product of nucleoproteins). * In later investigations, he found the bases adenine, guanine, and thymine. Frederick Griffith (1928) Showed that nonlethal bacteria could be transformed into lethal bacteria. Bacteria = Streptococcus pneumonia S strain = causes pneumonia R strain = harmless Experiment 1: injected mice with live R cells (harmless) a. mice lived Experiment 2: Injected mice with live S cells (harmful) a. mice died Experiment 3: Injected mice with heat killed S cells (harmful but dead) a. mice lived Experiment 4: Injected mice with mixed (living R –harmless mixed with dead harmful S) a. mice died Frederick Griffith Final conclusions: Some material must have been transferred from the heat-killed S (harmful) into the live R (harmless) bacteria. Transforming Principle: The mystery material that could change the harmless bacteria into harmful bacteria. Oswald Avery 1944 Purpose for the combination: to determine exactly what the transforming principle was. Purification purpose: It allowed them to directly observe the transformation from R (harmless) into S (harmful) (They wanted to see if the transforming principle was DNA or proteins) Conclusion: DNA is the transforming principle (genetic material) In other words…. The material basis for a gene is DNA Following the Work of Griffith Colin M. MacLeod and Maclyn McCarty 1. Published a paper in 1944 2. Followed the work of Griffith in order to discover what causes nonlethal bacteria to transform to a lethal strain. 3. Used special enzymes to determine that, in fact, DNA is the transforming factor. Hershey and Chase (1952) Did Hershey and Chase provide conclusive evidence that showed DNA to be the transforming/genetic material? YES Why a virus? * A virus contains two parts: Genetic material (DNA) and a protein coat. * Bacteriophages were big (for a virus) and will not harm a human who was studying it. “Phage” only attacks bacteria. Conclusion: DNA is the only part of the phage that entered into the bacteria, therefore DNA is the genetic material/transforming factor. (Further proved that Avery’s team was correct) Why were the 1950’s such an important era for DNA research? 1. In the wake of World War II, when research was primarily driven by wartime need, researchers returned to basic rather than applied research. 2. The 1950’s was a period of intense study as scientists attempted to understand the nature of DNA and the gene. 3. The structure of DNA was attacked from both biochemical and structural aspects. The Race for the Double Helix 1950’s Researchers Chargaff (1950) The race for DNA’s structure begins Chargaff studied the base composition of DNA from various organisms. Chargaff’s findings: 1. There were 4 bases in DNA (Adenine = A, Thymine = T, Cytosine = C and Guanine = G) found in all living things, but the proportion of the four bases differs. Which bases are equal: Adenine is equal with Thymine Cytosine is equal with Guanine “Chargaff’s Rule” Base Pairing Rules A=T C=G Franklin and Wilkins (1951) Technique called: X-Ray Crystallography (X-ray picture of DNA) Suggestions: The image showed an “X” shape surrounded by a circle. This suggested that DNA is in the shape of a double helix (twisted ladder) that consist of 2 strands (sides) that are a regular, consistent width apart. Maurice Wilkins (male)won a Nobel prize (1962) for this discovery. Rosalind Franklin (female) did not. She died of cancer before the prize was awarded. Watson and Crick (1953) Backbone of DNA: (sides) * Phosphate group covalently bonded to a deoxyribose sugar group. (P-S) Middle of DNA: * Nitrogen bases (A, T, C or G) Overall Shape: * Double Helix Both Watson and Crick along with Wilkins won the Nobel Prize in 1962 for their discovery. Francis Crick passed away on July 28, 2004 James Watson is still living. He was born April 6, 1928… that makes him 84-85 years old! A lot has happened since 1866 when Mendel worked with his pea plants. DNA stands for... DeoxyriboNucleic Acid Location for Chromosomes The chromosomes are located in the nucleus of a eukaryotic cell. DNA can be found in the: Nucleus of a cell Mitochondria of a cell Chloroplast of plant cells Structure of DNA 1. 2. Credit for the structure of DNA is given to James Watson and Francis Crick. DNA’s shape was determined to be a double helix. Sides of DNA 1. The sides of DNA are made up of: a. Phosphate group bonded to a Dexoyribose Sugar. 2. The sides are held together by covalent bonds. (strong bonds) Middle of DNA 1. The middle of DNA is composed of: a. Nitrogen bases (Adenine, Cytosine, Thymine or Guanine). 2. The middle bases are held together by hydrogen bonds. (easy to break) Sugar Found In DNA Deoxyribose Sugar Base Bonding Adenine bonds with Thymine Guanine bonds with Cytosine Nucleotides 1. DNA is made up of repeating units called: Nucleotides 2. 3 parts of a nucleotide: a. Phosphate group b. Deoxyribose sugar group c. Nitrogen base Review http://www.youtube.com/watch?v=qy8dk5iS1f0 Function Codes for proteins that create your genes (traits) Structure made of repeating subunits called nucleotides Bonding 1. The sides of the DNA ladder are a. Phosphate & sugar 2. Held together by Covalent bonds 3. In the middle are the bases. a. held together by hydrogen bonds. Base Pairing Rules Adenine <==> Thymine Guanine <==> Cytosine Base Pair Rule Practice One side: Other side: A T A T C A T G C G G G Let's Review What We Know About DNA 1. DNA stands for: De _____ ribo ______ acid 2. What is the shape of DNA? _______________ 3. Who established the structure of DNA? ____________ 4. Adenine always pairs with _______________ 5. The sides of the DNA ladder are deoxyribose and _____ 6. Guanine always pairs with _____________ 7. What is the complimentary sequence: A A T G C A 8. The two sides of DNA are held together by _______ bonds. 9. DNA is composed of repeating subunits called ______________________ 10. What are the 4 bases that make up the rungs of the DNA ladder? _______________________________________ Review of History of DNA Griffith, Avery, Hershey-Chase, WatsonCrick, Wilkins-Franklin, Chargaff 1. Which group worked with viruses? 2. What does “Chargaff’s Rules” state? 3. X-ray diffraction photographs by Wilkins and Franklin suggested that DNA have what shape? 4. Which scientist worked with bacteria and said that something “transformed” the harmless into harmful bacteria? 5. Which scientists also worked with bacteria and said that DNA was the “transforming” factor? DNA Replication (DNA DNA) 1. DNA is located in the nucleus. 2. DNA replication occurs in the nucleus. 3. DNA replication occurs during the S phase of Interphase in mitosis/meiosis. 4. DNA needs to replicate in order to assure that each cell has a complete set of identical genetic information. 5. Steps to DNA replication are on page 237 in HBT. Replication • DNA is semiconservative because each molecule (new DNA molecule) contains an original strand and one new strand. • Enzymes – Helicase: “unwinds” the helix – DNA polymerase: bond the new nucleotides together – Ligase: “proof-reads” the final product to check for errors Replication Review Replication takes place where in the cell? During which part of the cell cycle does replication occur? What does replication make? DNA RNA Central Dogma: Information flows in one direction From DNA to RNA Consist of three processes 1. Replication: DNA DNA 2. Transcription: DNA RNA (m-RNA) 3. Translation: protein synthesis Types of RNA A. Messenger RNA: (m-RNA) • • Intermediate message that is translated to form a protein. Assembled in the nucleus during transcription; a single strand copied from original DNA strand (T replaced with U) Codes for the amino acids. B. Transfer RNA: (t-RNA) 1. Found in the cytoplasm; bonds at a ribosome; anticodon on one end bonds with matching mRNA codon during translation. Carries the amino acid to the mRNA in order to form the protein. C. Ribosomal RNA: (r-RNA) 1. Helps in the creation of the structure of a ribosome. RNA carries the "message" to the ribosomes, where proteins are made Central Dogma of Protein Formation DNA --> RNA --> Protein (nucleus) (ribosomes) Proteins are the building blocks of the organism (traits) Transcription Transcription - process where RNA is made from DNA DNA RNA (DNA mRNA) Begins = _____ Ends at = _____ Reading a Codon Chart If DNA has the code: TAC GGG ATT What would the mRNA code be: What amino acids would this code for? Transcription Review Transcription DNA Where does it occur? begins: ends: The mRNA is called the codon Translation/ Protein Synthesis • Translation - process where proteins are made from RNA Protein Synthesis Takes place = _________ Uses tRNA which is called the anticodon