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... biological control of nematodes the most common approach is the use of soil borne fungi. In an attempt to obtain improved strains of nematode trapping fungi from different agro-climatic regions of India we have already reported a new isolate of Arthrobotrys musiformis as a potential biocontrol candi ...
Chap 4 Study Guide
Chap 4 Study Guide

... In the last chapter we learned about the amino acid composition and the structure of proteins. We also studied the process by which proteins are synthesized from information coded in the genes of the chromosomes. Of the body proteins, perhaps the most important group are the enzymes — the subject of ...
Evolution in space and time
Evolution in space and time

... by the environment. Selection can favour a bimodal phenotypic distribution, or two adaptive peaks simultaneously. e.g. Darwin's finches have available large, tough seeds, and small soft seeds which are hard to get out of their pods or off grass stems. One type of seed selects for stout, deep beaks; ...
Towards New Enzymes: Protein Engineering and Catalytic Antibodies
Towards New Enzymes: Protein Engineering and Catalytic Antibodies

... One of the most tantalizing dreams of organic chemists, ever since the discovery of enzymes and their intriguing potential, has been to one day have at their disposal enzymes specifica ll y catalyzing any difficult synthesis. The second winner of the Nobel prize for chemistry, Emil Fischer, showed e ...
Pol /Primase, Pol ε Pol ε α MIT Department of Biology 7.28, Spring
Pol /Primase, Pol ε Pol ε α MIT Department of Biology 7.28, Spring

... complementation assays at the non-permissive temperature, you anticipate that the purified protein is also temperature sensitive. Indeed, when you test the fractions you are purifying from the mutant cells you find that they can only complement the extracts derived from the mutant cells at 30°C but ...
Fatty acid
Fatty acid

... • Fats separate from water because water molecules form hydrogen bonds with each other and exclude the fats • In a fat, three fatty acids are joined to glycerol by an ester linkage, creating a triacylglycerol, or triglyceride ...
Chapter 1
Chapter 1

... Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. ...
7. molecular genetics.
7. molecular genetics.

... BIOLOGICAL RESEARCH. Human genes are inserted into animal cells to research diseases such as cancer. There is now also the potential for the development of effective treatments for genetic diseases. ...
Genomic characterization and phylogenetic analysis
Genomic characterization and phylogenetic analysis

... virus (CSBV) strain, which infects the honeybees in the Loess plateau, was sequenced and analyzed. The CSBV-SX strain contains 8705 nucleotides, which includes a single large open reading frame (99-8681 nucleotides) encoding 2860 amino acids. A novel efficient identification method was used to inves ...
A phage library and two cosmid libraries were
A phage library and two cosmid libraries were

... The six V R regions located on the phage and cosmid clones of Fig. 1 were sequenced and compared to each other and to the sequence of the mouse V_ probe which was used to isolate the phages Ch1 and Ch2 (Fig. 2 ) . The sequence of VI turned out to be identical to the sequence of HK102 which had been ...
Full Paper - Biotechniques.org
Full Paper - Biotechniques.org

... for Nepenthes robcantleyi. This band size difference indicated that different fungal species probably exist in those two pitcher plant species. ITS gene identified more fungal species than LSU in this project because the amplified ITS gene size was much larger and contained more variations than LSU ...
Molecular markers and their applications in cereals breeding
Molecular markers and their applications in cereals breeding

... been confirmed also by us. However, do to the multifactorial nature of FHB resistance, the combination of MAS on the major QTL during seedling stage with phenotypic selection on the particular plants after flowering stage could be at the moment more sufficient and safety strategy in breeding of a ne ...
Viruses The Viruses
Viruses The Viruses

... The genomes of the adenoviruses consist of linear double-stranded DNA of about 36 kilobase pairs. Attached in covalent linkage to the 5'-terminus of the DNA is a protein component essential for infectivity of the DNA. The DNA has inverted terminal repeats of 100-1800 base pairs (this varies with the ...
Information Extraction in Biology
Information Extraction in Biology

Scoring Guidelines - Ohio Assessment Systems
Scoring Guidelines - Ohio Assessment Systems

... different types of cells from the same organism and describe how protein synthesis is related to the expression of a gene. Looking at the protein in the Na+-K+ pump in nerve and muscle cells in a pig, the genes will be the same. The gene is expressed by protein synthesis because DNA is transcribed t ...
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Biocatalysis - School of Chemical Sciences
Biocatalysis - School of Chemical Sciences

... and fewer environmental problems. Other advantages, like high catalytic efficiency and mild operational conditions, are also very attractive in commercial applications. The characteristics of limited operating regions, substrate or product inhibition, and reactions in aqueous solutions have often bee ...
Oncomedicine Base Excision Repair Manipulation in Breast
Oncomedicine Base Excision Repair Manipulation in Breast

... functions, it possess proof reading role and catalyzes the removal of 3’-blocking agents generated by bifunctional DNA glycosylases [41].Several studies are linked with the differential expression profiles of BER enzymes such as (redox factor 1/apurinic apyrimidinic endonuclease 1 (REF1/APEX1), NTH ...
Transcription Factors (from Wray et al Mol Biol Evol 20:1377)
Transcription Factors (from Wray et al Mol Biol Evol 20:1377)

FISH or CISH methods for In situ hybridization
FISH or CISH methods for In situ hybridization

... combination of FISH Tag™ and TSA™ Kits. Drosophila melanogaster embryos were hybridized with a green-fluorescent ftz probe (FISH Tag™ RNA Labeling Kit with Alexa Fluor® 488 dye), a far-red–fluorescent Kruppel probe (FISH Tag™ RNA Labeling Kit with Alexa Fluor® 647 dye), and a fluorescein UTP–labeled ...
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... from the 5’ and 3’ ends of the RNA that will become the mature tRNA (shown as a cloverleaf). The site of cleavage is indicated by the short vertical arrows above the lines denoting RNA, and they are labeled with the name of the enzyme cutting at that site. The enzymes catalyzing each reaction are li ...
Abstract
Abstract

... clone our RAD23 homolog genes from the Tetrahymena in order to study them. In the lab, we separated our target gene and duplicated it through the use of polymerase chain reactions (PCR). Once this was done, it was then stored in a plasmid, which is a circular piece of DNA. Ultimately, this will allo ...
The Genetic Code
The Genetic Code

... codon – Only tryptophan and methionine are encoded by single codon (Figure 13-7) – Genetic code shows order: chemically similar amino acids share one or two middle bases in ...
The biological meaning of pairwise alignments
The biological meaning of pairwise alignments

... • What is the biological question? Examples: • Which proteins of the database are similar to my protein sequence? • Which proteins of the database are similar to the conceptual translation of my DNA sequence? • Which nucleotide sequences in the database are similar to my nucleotide sequence? • Which ...
ENZYMOLOGY
ENZYMOLOGY

... of covalent intermediates in enzyme-mediated reactions is striking proof of ES complexes. These intermediates are not just simple Michaelis complexes, though they are formed by the covalent reaction of a portion of the substrate molecule with a reactive group present in the enzyme. The side chains o ...
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Deoxyribozyme



Deoxyribozymes, also called DNA enzymes, DNAzymes, or catalytic DNA, are DNA oligonucleotides that are capable of catalyzing specific chemical reactions, similar to the action of other biological enzymes, such as proteins or ribozymes (enzymes composed of RNA).However, in contrast to the abundance of protein enzymes in biological systems and the discovery of biological ribozymes in the 1980s,there are no known naturally occurring deoxyribozymes.Deoxyribozymes should not be confused with DNA aptamers which are oligonucleotides that selectively bind a target ligand, but do not catalyze a subsequent chemical reaction.With the exception of ribozymes, nucleic acid molecules within cells primarily serve as storage of genetic information due to its ability to form complementary base pairs, which allows for high-fidelity copying and transfer of genetic information. In contrast, nucleic acid molecules are more limited in their catalytic ability, in comparison to protein enzymes, to just three types of interactions: hydrogen bonding, pi stacking, and metal-ion coordination. This is due to the limited number of functional groups of the nucleic acid monomers: while proteins are built from up to twenty different amino acids with various functional groups, nucleic acids are built from just four chemically similar nucleobases. In addition, DNA lacks the 2'-hydroxyl group found in RNA which limits the catalytic competency of deoxyribozymes even in comparison to ribozymes.In addition to the inherent inferiority of DNA catalytic activity, the apparent lack of naturally occurring deoxyribozymes may also be due to the primarily double-stranded conformation of DNA in biological systems which would limit its physical flexibility and ability to form tertiary structures, and so would drastically limit the ability of double-stranded DNA to act as a catalyst; though there are a few known instances of biological single-stranded DNA such as multicopy single-stranded DNA (msDNA), certain viral genomes, and the replication fork formed during DNA replication. Further structural differences between DNA and RNA may also play a role in the lack of biological deoxyribozymes, such as the additional methyl group of the DNA base thymidine compared to the RNA base uracil or the tendency of DNA to adopt the B-form helix while RNA tends to adopt the A-form helix. However, it has also been shown that DNA can form structures that RNA cannot, which suggests that, though there are differences in structures that each can form, neither is inherently more or less catalytic due to their possible structural motifs.
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