Zhang, Zhiyong: An Overview of Protein Structure Prediction: From Homology to Ab Initio
... determined experimentally at an accelerated rate, it is simply not possible to determine all the protein structures from experiments. As more and more protein sequences are determined, there is pressing need for predicting protein structures computationally. Decades of intense research in this area ...
... determined experimentally at an accelerated rate, it is simply not possible to determine all the protein structures from experiments. As more and more protein sequences are determined, there is pressing need for predicting protein structures computationally. Decades of intense research in this area ...
Georgatsou E. and Alexandraki D. - IMBB-FORTH in
... to Fe2+ (6, 8, 10, 20, 39). The transmembrane reductase apparently uses NADH as the intracellular electron donor (40). Following the reduction of iron, a transmembrane ferrous transporter system delivers the ferrous ions inside the cell. The two systems, the reductase and the transporter, have been ...
... to Fe2+ (6, 8, 10, 20, 39). The transmembrane reductase apparently uses NADH as the intracellular electron donor (40). Following the reduction of iron, a transmembrane ferrous transporter system delivers the ferrous ions inside the cell. The two systems, the reductase and the transporter, have been ...
Logistic regression models to predict solvent accessible residues
... models on test data. Logistic models are one method that should be explored in the context of protein topology, easily incorporating the corresponding quantitative and qualitative descriptors. Logistic regression models have proven to be an adaptable choice for binary classification problems in fiel ...
... models on test data. Logistic models are one method that should be explored in the context of protein topology, easily incorporating the corresponding quantitative and qualitative descriptors. Logistic regression models have proven to be an adaptable choice for binary classification problems in fiel ...
Journal of Applied Phycology
... We report the cloning and sequencing of the recA gene from Spirulinaplatensis. A genomic library of Spirulina was constructed in pUC19 and screened by PCR using oligonucleotides corresponding to the conserved amino acid sequences of Anabaena variabilisand Synechococcus RecA proteins. The Spirulina r ...
... We report the cloning and sequencing of the recA gene from Spirulinaplatensis. A genomic library of Spirulina was constructed in pUC19 and screened by PCR using oligonucleotides corresponding to the conserved amino acid sequences of Anabaena variabilisand Synechococcus RecA proteins. The Spirulina r ...
Selective Amino Acid-Type Labeling(continued)
... undesired amino acids (also called as “isotope scrambling”).3 This happens due to metabolic conversion of one amino acid to another in the bio-synthetic pathway of the cell. The problem becomes more severe for amino acids higher up or intermediates in the metabolic pathway such as Asp, Glu and Gln ( ...
... undesired amino acids (also called as “isotope scrambling”).3 This happens due to metabolic conversion of one amino acid to another in the bio-synthetic pathway of the cell. The problem becomes more severe for amino acids higher up or intermediates in the metabolic pathway such as Asp, Glu and Gln ( ...
Small-angle scattering studies of intrinsically disordered proteins
... complementary to NMR since the two techniques probe non-overlapping parts of the same entity [68]. Conversely, SAXS probes the complete assembly and can be used to integrate the information from both NMR and X-ray crystallography. If one of the partners is deuterated, contrast variation SANS experi ...
... complementary to NMR since the two techniques probe non-overlapping parts of the same entity [68]. Conversely, SAXS probes the complete assembly and can be used to integrate the information from both NMR and X-ray crystallography. If one of the partners is deuterated, contrast variation SANS experi ...
The Electron Transport Chain
... Shown above is a mitochondrian. The mitochondrian is enclosed by an outer membrane and a more complex inner mitochondrial membrane. The space between the inner and outer mitochondrial membranes is called the intermembrane space. With in this space we find enzymes that utilize ATP such as creatine k ...
... Shown above is a mitochondrian. The mitochondrian is enclosed by an outer membrane and a more complex inner mitochondrial membrane. The space between the inner and outer mitochondrial membranes is called the intermembrane space. With in this space we find enzymes that utilize ATP such as creatine k ...
(Rev. 9/04), Biographical Sketch Format Page
... Dylan Hixon Prize for Teaching Excellence in the Natural Sciences at Yale B. Selected peer-reviewed publications (in chronological order) Koelle, M.R., Talbot, W.S., Segraves, W.A., Bender, M.T., Cherbas, P. and Hogness, D.S. (1991) The Drosophila EcR gene encodes an ecdysone receptor, a new member ...
... Dylan Hixon Prize for Teaching Excellence in the Natural Sciences at Yale B. Selected peer-reviewed publications (in chronological order) Koelle, M.R., Talbot, W.S., Segraves, W.A., Bender, M.T., Cherbas, P. and Hogness, D.S. (1991) The Drosophila EcR gene encodes an ecdysone receptor, a new member ...
Chemical Nature of the Amino Acids Table of a
... encountered in the interior of proteins shielded from direct contact with water. Conversely, the hydrophilic amino acids are generally found on the exterior of proteins as well as in the active centers of enzymatically active proteins. Indeed, it is the very nature of certain amino acid R-groups tha ...
... encountered in the interior of proteins shielded from direct contact with water. Conversely, the hydrophilic amino acids are generally found on the exterior of proteins as well as in the active centers of enzymatically active proteins. Indeed, it is the very nature of certain amino acid R-groups tha ...
Bioinformatics Tools Review ()
... the sequence above. Click on the link gi|1498054|gb|U64437.1|ZMU64437 (Zea mays novel protein mRNA, complete cds) to see the nucleotide sequence file. The sequence file is in Genbank format. Note that the accession number is U64437 and this sequence is an mRNA sequence. The nucleotide sequence U644 ...
... the sequence above. Click on the link gi|1498054|gb|U64437.1|ZMU64437 (Zea mays novel protein mRNA, complete cds) to see the nucleotide sequence file. The sequence file is in Genbank format. Note that the accession number is U64437 and this sequence is an mRNA sequence. The nucleotide sequence U644 ...
Di-(2-ethylhexyl) phthalate mediates glycolysis and the TCA cycle
... response in marine invertebrates. In this study, GS-MS was employed to determine the bio-accumulated levels of DEHP in clam Venerupis philippinarum. After exposure to 0.4 mg L-1 and 4mg L-1 DEHP, the bio-accumulated DEHP in the clam foot was significantly increased in the first 24 h, and then sharpl ...
... response in marine invertebrates. In this study, GS-MS was employed to determine the bio-accumulated levels of DEHP in clam Venerupis philippinarum. After exposure to 0.4 mg L-1 and 4mg L-1 DEHP, the bio-accumulated DEHP in the clam foot was significantly increased in the first 24 h, and then sharpl ...
BIM1 Encodes a Microtubule-binding Protein in Yeast.
... mating (Huffaker et al., 1988). Yeast microtubules are always found attached to a spindle pole embedded in the nuclear membrane (Byers, 1981). The intranuclear microtubules project into the nucleus and appear to be responsible for chromosome separation, whereas the extranuclear microtubules have bee ...
... mating (Huffaker et al., 1988). Yeast microtubules are always found attached to a spindle pole embedded in the nuclear membrane (Byers, 1981). The intranuclear microtubules project into the nucleus and appear to be responsible for chromosome separation, whereas the extranuclear microtubules have bee ...
Methodology for predicting semantic annotations of protein
... The framework of this thesis is located in the field of bioinformatics. Particularly in the area associated to machine learning and pattern recognition, where a methodology for predict semantic annotations of proteins based on a robust feature extraction is proposed. The first part of this thesis co ...
... The framework of this thesis is located in the field of bioinformatics. Particularly in the area associated to machine learning and pattern recognition, where a methodology for predict semantic annotations of proteins based on a robust feature extraction is proposed. The first part of this thesis co ...
Nutrient Metabolism
... MJ of digestible energy/kg of dry matter (Table 1). Protein was also formulated at two levels: high protein (HP; 14.5 g/100 g CP) and low protein (LP; 7.5 g/100 g CP) supplemented with 0.5% L-lysine and 0.3% L-threonine (Heartland Lysine, Chicago, IL) to match the amino acids in HP. The National Res ...
... MJ of digestible energy/kg of dry matter (Table 1). Protein was also formulated at two levels: high protein (HP; 14.5 g/100 g CP) and low protein (LP; 7.5 g/100 g CP) supplemented with 0.5% L-lysine and 0.3% L-threonine (Heartland Lysine, Chicago, IL) to match the amino acids in HP. The National Res ...
Lethal protein produced in response to competition
... to virulent streptococci (5). The antimicrobial compounds secreted during cannibalism or fratricide (2–6) are called bacteriocins, and usually have a narrow spectrum of activity as they kill only closely related bacteria, which compete for the same resources. Competition among bacteria is not limite ...
... to virulent streptococci (5). The antimicrobial compounds secreted during cannibalism or fratricide (2–6) are called bacteriocins, and usually have a narrow spectrum of activity as they kill only closely related bacteria, which compete for the same resources. Competition among bacteria is not limite ...
Dicot and monocot plants differ in retinoblastoma
... by the characterization of a partial maize cDNA clone (Grafi et al., 1996). The RBR genes from Zea mays, ZmRBR2a and ZmRBR2b (Ach et al., 1997), are partial cDNA sequences which may represent alternative splice variants of the ZmRBR2 gene. The degree of homology between the proteins encoded by these ...
... by the characterization of a partial maize cDNA clone (Grafi et al., 1996). The RBR genes from Zea mays, ZmRBR2a and ZmRBR2b (Ach et al., 1997), are partial cDNA sequences which may represent alternative splice variants of the ZmRBR2 gene. The degree of homology between the proteins encoded by these ...
Antifolding activity of hsp60 couples protein import into the
... reticulocyte lysate were added to isolated yeast mitochondria (Figure 2). Authentic precytochrome b2 was imported and processed in two steps to the intermediate and mature forms. Most of the mature-sized protein generated was in the intermembrane space and thus protected against externally added pro ...
... reticulocyte lysate were added to isolated yeast mitochondria (Figure 2). Authentic precytochrome b2 was imported and processed in two steps to the intermediate and mature forms. Most of the mature-sized protein generated was in the intermembrane space and thus protected against externally added pro ...
Structure and mechanism of ATP-dependent phospholipid transporters
... Major conclusions: Both protein families hydrolyze ATP, although they employ different mechanisms to use it, and have a comparable size with twelve transmembrane segments in the functional unit. Further, despite differences in overall architecture, both appear to operate by an alternating access mec ...
... Major conclusions: Both protein families hydrolyze ATP, although they employ different mechanisms to use it, and have a comparable size with twelve transmembrane segments in the functional unit. Further, despite differences in overall architecture, both appear to operate by an alternating access mec ...
Phosphoproteomics as a tool to unravel plant
... Busconi 2001, Saijo et al. 2000) and overexpression of their genes enhances cold tolerance (Abbasi et al. 2004, ...
... Busconi 2001, Saijo et al. 2000) and overexpression of their genes enhances cold tolerance (Abbasi et al. 2004, ...
Influence of Valine Analogues on Protein Synthesis of Chicken
... was six. One missing value in the ×1 D-valine treatment. Bars presented means±SEM. Means with asterisks are significantly different from the control (None) at P＜0.05. MeVal: methylvaline. ...
... was six. One missing value in the ×1 D-valine treatment. Bars presented means±SEM. Means with asterisks are significantly different from the control (None) at P＜0.05. MeVal: methylvaline. ...
Supplemental data, Section 1: In the following section, we described
... identify a transport system for biotin or for pimelate, a precursor of biotin(1, 15). However, it has been observed that Bacillus sphaericus, Escherichia coli, and Pseudomonas dentrificans are able to take up pimelate by passive diffusion (11). Therefore, it appears that such diffusion of pimelate m ...
... identify a transport system for biotin or for pimelate, a precursor of biotin(1, 15). However, it has been observed that Bacillus sphaericus, Escherichia coli, and Pseudomonas dentrificans are able to take up pimelate by passive diffusion (11). Therefore, it appears that such diffusion of pimelate m ...