Prediction of Anti-parallel and Parallel Beta
... data sets they used are very unbalanced so that the negative residues cover around 90% of the data. Recently, Steward & Thornton developed to a set of tables with pairinformation values for each amino acids using information theory approach [Steward & Thornton, 2002]. Using the tables, they can corr ...
... data sets they used are very unbalanced so that the negative residues cover around 90% of the data. Recently, Steward & Thornton developed to a set of tables with pairinformation values for each amino acids using information theory approach [Steward & Thornton, 2002]. Using the tables, they can corr ...
Microbial Adaptations to the Psychrosphere/Piezosphere
... Synechococcus (Yazawa, 1996; Takeyama et al., 1997). The nucleotide sequence of this DNA was determined and based upon deletion analysis and deduced amino acid homology to other known enzymes involved in fatty acid synthesis, heterocyst glycolipid synthesis and polyketide antibiotic synthesis, six o ...
... Synechococcus (Yazawa, 1996; Takeyama et al., 1997). The nucleotide sequence of this DNA was determined and based upon deletion analysis and deduced amino acid homology to other known enzymes involved in fatty acid synthesis, heterocyst glycolipid synthesis and polyketide antibiotic synthesis, six o ...
Clathrinmediated transport: assembly required
... Formation and function of the clathrin scaffold In the mid-1970s, the isolation of CCVs by density centrifugation allowed B. Pearse (Cambridge, UK) to purify clathrin, one of the main components of these structures (Pearse, 1976). The assembly unit of clathrin, commonly referred to as the ‘triskelio ...
... Formation and function of the clathrin scaffold In the mid-1970s, the isolation of CCVs by density centrifugation allowed B. Pearse (Cambridge, UK) to purify clathrin, one of the main components of these structures (Pearse, 1976). The assembly unit of clathrin, commonly referred to as the ‘triskelio ...
C-terminal Truncation of p21H Preserves Crucial Kinetic and
... T4 DNA Ligase,polynucleotide kinase, and dNTPswere from Boehringer Mannheim, Federal Republic of Germany. The above reagents were used as described in the laboratory manual of Maniatis et al. (18).Transformation was done according to themethod of Hanahan (19) with frozen cells or according to theCaC ...
... T4 DNA Ligase,polynucleotide kinase, and dNTPswere from Boehringer Mannheim, Federal Republic of Germany. The above reagents were used as described in the laboratory manual of Maniatis et al. (18).Transformation was done according to themethod of Hanahan (19) with frozen cells or according to theCaC ...
Evolution of Gamete Recognition Proteins
... acids long of differing sequences. Eleven asterosaps have been sequenced from one starfish species (8). All three types of molecules are necessary for optimal induction of the starfish sperm AR. When sea urchin sperm contact the egg jelly coat, a polymer of sulfated fucose (FSP) binds to a sperm rec ...
... acids long of differing sequences. Eleven asterosaps have been sequenced from one starfish species (8). All three types of molecules are necessary for optimal induction of the starfish sperm AR. When sea urchin sperm contact the egg jelly coat, a polymer of sulfated fucose (FSP) binds to a sperm rec ...
Characterization of Escherichia coZi adenylate cyclase mutants with
... adenylate cyclase (AC) activity is regulated is not yet understood. In the presence of glucose, enzymeIIIglucose, a component of the phosphotransferase system (PTS), regulates uptake of non-PTS sugars (inducer exclusion : Magasanik, 1970)and AC activity. The model proposed for the regulation of AC w ...
... adenylate cyclase (AC) activity is regulated is not yet understood. In the presence of glucose, enzymeIIIglucose, a component of the phosphotransferase system (PTS), regulates uptake of non-PTS sugars (inducer exclusion : Magasanik, 1970)and AC activity. The model proposed for the regulation of AC w ...
Defining the anabolic window of opportunity
... protein accumulation will reach similar levels after a certain period of time. Whereas there may be an initial rate of MPS with immediate ingestion of protein that is greater than if no protein is ingested, subsequent protein ingestion stimulates MPS as well (6,9). After so many hours – provided all ...
... protein accumulation will reach similar levels after a certain period of time. Whereas there may be an initial rate of MPS with immediate ingestion of protein that is greater than if no protein is ingested, subsequent protein ingestion stimulates MPS as well (6,9). After so many hours – provided all ...
Full PDF
... domain participates in interdomain contacts in the homodimer structure. We thus predicted that this system would be particularly useful for the structural study of different hypervariable loops. Indeed, we were able to crystallize a mutant of the McPC603 VL , in which the first CDR sequence (CDR1) w ...
... domain participates in interdomain contacts in the homodimer structure. We thus predicted that this system would be particularly useful for the structural study of different hypervariable loops. Indeed, we were able to crystallize a mutant of the McPC603 VL , in which the first CDR sequence (CDR1) w ...
Experimental evolution of protein–protein interaction networks
... the biological networks that composed living organisms [8]. One way for biological networks to increase complexity is by recruiting other macromolecules into the existing architecture without diminishing a network’s fundamental function. To achieve this, biological networks must exhibit and maintain ...
... the biological networks that composed living organisms [8]. One way for biological networks to increase complexity is by recruiting other macromolecules into the existing architecture without diminishing a network’s fundamental function. To achieve this, biological networks must exhibit and maintain ...
Chlamydia effector proteins and new insights into chlamydial
... Please cite this article in press as: Valdivia RH, Chlamydia effector proteins and new insights into chlamydial cellular microbiology, Curr Opin Microbiol (2008), doi:10.1016/j.mib.2008.01.003 ...
... Please cite this article in press as: Valdivia RH, Chlamydia effector proteins and new insights into chlamydial cellular microbiology, Curr Opin Microbiol (2008), doi:10.1016/j.mib.2008.01.003 ...
molecular dynamics studies on mammalian apometallothioneins
... Abstract: Despite innumerable publications on metallothionein (MT), the literature on apo-MT is limited. Without the understanding of apo-MT, it is not possible to study the metallation process of MT which is the key process involved in various functions of MT like metal transfer and heavy metal det ...
... Abstract: Despite innumerable publications on metallothionein (MT), the literature on apo-MT is limited. Without the understanding of apo-MT, it is not possible to study the metallation process of MT which is the key process involved in various functions of MT like metal transfer and heavy metal det ...
the molecular basis of dehydration tolerance in plants
... caused to the living cell can be related to water deficit (84, 124). Although we are still far from a complete understanding of the damage caused by drought, or the plant’s tolerance mechanisms, much molecular data has been collected over the past few years. Current knowledge of the regulatory netwo ...
... caused to the living cell can be related to water deficit (84, 124). Although we are still far from a complete understanding of the damage caused by drought, or the plant’s tolerance mechanisms, much molecular data has been collected over the past few years. Current knowledge of the regulatory netwo ...
as a PDF
... determining the suitability of a given phosphopeptide as a substrate. (3) Interactions within and between RPTPs are an important means by which the activity of these enzymes is regulated. In particular, the “wedge” region plays a critical role in extinguishing enzymatic activity. (4) With few except ...
... determining the suitability of a given phosphopeptide as a substrate. (3) Interactions within and between RPTPs are an important means by which the activity of these enzymes is regulated. In particular, the “wedge” region plays a critical role in extinguishing enzymatic activity. (4) With few except ...
copy_of_secstruc
... Stretches of residues in E conformation are beta-strand SSEs. Stretches of residues in C conformation are loops or coil. Turns (T) are isolated residues, usually Proline or Glycine. Other notation (in 3 states): L for all but H,E. ...
... Stretches of residues in E conformation are beta-strand SSEs. Stretches of residues in C conformation are loops or coil. Turns (T) are isolated residues, usually Proline or Glycine. Other notation (in 3 states): L for all but H,E. ...
Determination and Quantification of Molecular Interactions in Protein
... is an excellent film forming agent, but an addition of plasticizer to the film is necessary to form a homogenous film. Glutenins, gliadins, and the low molecular weight proteins albumins and globulins are the primary wheat protein fractions [27,60,61]. Gliadins can be classified into α-, β-, γ-, and ...
... is an excellent film forming agent, but an addition of plasticizer to the film is necessary to form a homogenous film. Glutenins, gliadins, and the low molecular weight proteins albumins and globulins are the primary wheat protein fractions [27,60,61]. Gliadins can be classified into α-, β-, γ-, and ...
Topic 16
... Figure 13.4 Multilimbed Pacific tree frog (Hyla regilla), the result of infestation of the tadpole-stage developing limb buds by trematode cysts ...
... Figure 13.4 Multilimbed Pacific tree frog (Hyla regilla), the result of infestation of the tadpole-stage developing limb buds by trematode cysts ...
Support Vector Machine-based classification of protein folds using
... their accuracies remain low. This can be attributed to insufficient exploitation of fold discriminatory features. Results: We have developed a new method for protein fold recognition using structural information of amino acid residues and amino acid residue pairs. Since protein fold recognition can ...
... their accuracies remain low. This can be attributed to insufficient exploitation of fold discriminatory features. Results: We have developed a new method for protein fold recognition using structural information of amino acid residues and amino acid residue pairs. Since protein fold recognition can ...
NF96-251 A Comparative Study of Fiber Digestion and Subsequent
... minerals has occurred in the small intestine. Because the site of fiber digestion is after the small intestine, this means that little to no protein or amino acid utilization can occur during the microbial forage breakdown. Protein and amino acids are basically only absorbed in the small intestine w ...
... minerals has occurred in the small intestine. Because the site of fiber digestion is after the small intestine, this means that little to no protein or amino acid utilization can occur during the microbial forage breakdown. Protein and amino acids are basically only absorbed in the small intestine w ...
2 Nucleic Acids
... If you look at Figure 2.1, you will see that the sugar of one nucleotide binds to the phosphate group of the next nucleotide. These two molecules alternate to form the backbone of the nucleotide chain. This backbone is known as the sugar-phosphate backbone. The nitrogen bases in a nucleic acid stick ...
... If you look at Figure 2.1, you will see that the sugar of one nucleotide binds to the phosphate group of the next nucleotide. These two molecules alternate to form the backbone of the nucleotide chain. This backbone is known as the sugar-phosphate backbone. The nitrogen bases in a nucleic acid stick ...
Exploring Mouse Protein Function via Multiple Approaches
... 1% of the more than 13 million protein sequences available have been experimentally annotated with essential functions; the remaining proteins have been marked with putative, uncharacterized, hypothetical, unknown or inferred functions [1]. Although physical experimental approaches, including high-t ...
... 1% of the more than 13 million protein sequences available have been experimentally annotated with essential functions; the remaining proteins have been marked with putative, uncharacterized, hypothetical, unknown or inferred functions [1]. Although physical experimental approaches, including high-t ...
Structural determinants of cold adaptation and stability in a
... The thermodynamic studies were mainly performed by differential scanning calorimetry. Four parameters are usually assigned to the unfolding event recorded by differential scanning calorimetry: (i) the melting point of the unfolding transition, (ii) ∆Cp , the difference in heat capacity between the n ...
... The thermodynamic studies were mainly performed by differential scanning calorimetry. Four parameters are usually assigned to the unfolding event recorded by differential scanning calorimetry: (i) the melting point of the unfolding transition, (ii) ∆Cp , the difference in heat capacity between the n ...
Adaptation and Protein Quality Control Under Metalloid
... Several human degenerative diseases are linked to misfolding and aggregation of specific proteins. I have shown that many of these proteins have yeast homologs that are particularly prone to misfolding and aggregation during arsenite exposure. The yeast proteins are highly dependent on chaperones fo ...
... Several human degenerative diseases are linked to misfolding and aggregation of specific proteins. I have shown that many of these proteins have yeast homologs that are particularly prone to misfolding and aggregation during arsenite exposure. The yeast proteins are highly dependent on chaperones fo ...
How to move an amphipathic molecule across a lipid
... in principle, CoA esters could be formed either outside or inside the peroxisome. There has been much debate regarding the identity of the molecular species transported by ABCD proteins, specifically whether the transporters accept CoA esters or free acids. Experiments in which the yeast plasma memb ...
... in principle, CoA esters could be formed either outside or inside the peroxisome. There has been much debate regarding the identity of the molecular species transported by ABCD proteins, specifically whether the transporters accept CoA esters or free acids. Experiments in which the yeast plasma memb ...