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Table S2 Biomarker Functions discussed in Publications Biomarker Site found Physiological/pathological role The Raf kinase inhibitor protein (RKIP) T Lymphocytes 10 Alpha-enolase T Lymphocytes 3Hydroxyisobutyr ate dehydrogenase, mitochondrial APMAP T Lymphocytes a factor involved in several signalling cascades, which can inhibit activation of NF-kB, a transcription factor regulating a number of immune genes a glycolytic enzyme involved in many processes, including the initiation of disease conditions, acting as a plasminogen surface receptor a key enzyme in the valine oxidation pathway Adipocyte differentiation 12 an antioxidant enzyme involved in controlling the redox cellular state perhaps representing differentiating steps of the immune reaction to PCOS an aspartyl lysosomal protease involved in various biological processes such as apoptosis, angiogenesis and proliferation Antioxidant activity. 10 biomarker of ovarian cancers, adiposity, may increase the risks of diabetes and cardiovascular disease. Also involved in acute phase immune response mechanism as an anti-inflammatory agent Cholesterol Transport Apolipoprotein A-1 is the major constituent of high-density lipoprotein (HDL) cholesterol and participates in cholesterol metabolism by extracting free cholesterol from peripheral tissues, thus exerting a cardioprotective effect by preventing lipid accumulation in arterial walls Cytoskeleton actin cytoskeleton plays an important role in regulating the insulinmediated traffic of glucose transporter 4 vesicles to the adipocyte plasma membrane, down-regulation of the immune response 15 Glucose metabolism 12 Peroxiredoxin-1 Omental Biopsies. Adipose T Lymphocytes Cathepsin D T Lymphocytes Peroxiredoxin 2 isoform a Omental Biopsies. Adipose Serum Haptoglobin Proapolipoprotei n ApoA1 Omental Biopsies. Adipose Actin beta Omental Biopsies. Adipose an inactivating cleavage product of the complement component 4b, Triosephosphate isomerise Serum Omental Biopsies. Adipose Reference 10 10 10 12 12 12 19 GSTM3 (glutathione Stransferase M3) HSP47 Omental Biopsies. Adipose ovarian biopsies Glutathione metabolism and an antioxidant enzyme 12 implicated in the pathogenesis of fibrotic diseases and collagen metabolism 14 complement C4α3c chain Serum 15 complement C4γ chain Serum complement C4α4c chain Serum apolipoprotein C-I Serum from Non Insulin Resistant PCOS Women Serum from Insulin Resistant PCOS Women Omental Biopsies. Adipose infertility, autoimmunity, coronary heart disease, insulin resistance and insulin dependent diabetes infertility, autoimmunity, coronary heart disease, insulin resistance and insulin dependent diabetes infertility, autoimmunity, coronary heart disease, insulin resistance and insulin dependent diabetes inhibits lipoprotein metabolism in the liver inhibits lipoprotein metabolism in the liver 17 Phospholipid binding may be a compensatory mechanism against the oxidative stress induced by chronic inflammation. may also reflect the apoptosis of adipocytes and preadipocytes induced by the tumor necrosis factor alpha (TNF-a) secreted by these cells as a result of the inflammatory process associated with obesity protect cells against apoptosis. 12 14 apolipoprotein C-I Annexin V 15 15 17 14 10kda heat shock protein, mitochondrial (Hsp10) (10 kDa chaperonin) Heat shock 27 kDa protein (HSP 27) ovarian biopsies Antithrombin Follicular Fluid protein chaperoning, steroidogenesis and especially protection against apoptosis. Suppresses reactive oxygen species (ROS) generation regulation of fibrinolysis and thrombosis Fibrinogen Follicular Fluid regulation of fibrinolysis and thrombosis Antithrombin-III precursor (ATIII) Fibrinogen, alpha chain, isoform alpha preproprotein Fibrinogen gamma chain precursor Plasminogenrelated protein A (Fragment) Annexin A2 (Annexin II) (Lipocortin II) (Calpactin I ovarian biopsies ovarian biopsies regulation of fibrinolysis and thrombosis 11 11 14 regulation of fibrinolysis and thrombosis 14 ovarian biopsies regulation of fibrinolysis and thrombosis 14 ovarian biopsies regulation of fibrinolysis and thrombosis 14 ovarian biopsies regulation of fibrinolysis and thrombosis 14 ovarian biopsies heavy chain) Annexin A11 (Annexin XI) (Calcyclinassociated annexin 50) Far upstream element binding protein 2 (FUSE binding protein 2) Far upstream element binding protein 1 (FUSE binding protein 1) Rho GDPdissociation inhibitor 1 F-actin capping protein alpha-1 subunit Cofilin-1 ovarian biopsies regulation of fibrinolysis and thrombosis 14 ovarian biopsies regulation of metabolism 14 ovarian biopsies regulation of metabolism, regulator of insulin function 14 T Lymphocytes 10 Glyoxylate reductase/hydro xypyruvate reductase Flotillin-1 ovarian biopsies regulation of the cytoskeleton structure and might reflect the different functional state of the immune cellular system regulation of the cytoskeleton structure and might reflect the different functional state of the immune cellular system regulation of the cytoskeleton structure and might reflect the different functional state of the immune cellular system regulator of insulin function, ovarian biopsies ovarian biopsies regulator of insulin function, 14 regulator of insulin function, 14 ovarian biopsies regulator of insulin function, removal of homocysteine 14 T Lymphocytes Similar regulation of has been described in an in vitro model of insulin resistance 10 T Lymphocytes Similar regulation of has been described in an in vitro model of insulin resistance 10 T Lymphocytes the following secreted peptides can be generated by it by alternative proteolytic processing: connective tissue-activating peptide III, b-thromboglobulin and neutrophil-activating peptide 2. These peptides act as regulatory molecules of the immune response Transport 10 Malate dehydrogenase, mitochondrial precursor Methionine adenosyltransfer ase II, beta, isoform 1 Protein disulphideisomerase A3 Superoxide dismutase (Mn),mitochondr ial (precursor) Platelet basic protein (precursor) Albumin T Lymphocytes T Lymphocytes Omental Biopsies. Adipose 10 10 14 12