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Download BIO 208 - Microbiology - Unit 4 - Lecture 20
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BIO 208 Unit 4 – Microbes in Health and Disease 1 Unit 4 – Survey of the Role of Microbes in Health and Disease In Lecture 20 we will talk about several aspects of microbial water quality – to aid in your preparation, review of material from Lab 18 where it applies to lecture today. A. Microbial Aspects of Water Quality Clean and safe drinking water – global perspective In the U.S. water quality is regulated by __________________________________________ Microorganisms from the intestinal system are shed with feces and can be transmitted via the ____________________________ route (E. coli and pathogens like Salmonella) Quality Control - Water Quality Testing – Testing for likelihood of fecal contamination Indicator Organisms – Indicator of potential fecal contamination - Ideally an indicator organism: 1. is present whenever intestinal pathogens of concern are present 2. is present only when there is real danger of intestinal pathogens being present 3. is present in greater number than the pathogens to provide a margin of safety 4. survives in the environment at least as long as the pathogens do 5. is easy to detect (such as the membrane filtration test you did in lab) Commonly Used Indicators 1. Total coliforms – GNR that ferment lactose Problem – 2. Fecal coliforms – a subset of coliforms that are thermotolerant 3. E. coli and enterococci (species of streptococci that are found in the intestines) – most specific indicators of recent fecal contamination – BIO 208 Unit 4 – Microbes in Health and Disease 2 1. Wastewater Treatment Wastewater – comes from domestic or industrial effluents (effluent is the outpouring of water) Domestic H2O = Q. Why does wastewater need to be treated? A. Because it is: 1. 2. 3. Q. What are the goals of wastewater treatment? A. 1. 2. Q. What happens to domestic wastewater? A. Wastewater treatment consists of a combination of physical and biological processes 1. Primary – physical - screen out large junk, settle sludge + liquid 2. Secondary – microbial - nutrient load, organics (BOD) Liquid – aerobic Sludge – anaerobic aerobic respirers (heterotrophs + chemoautotrophs) fermenters and anaerobic respirers Oxidation of complex organics CO2 Fermentation of complex organics CO2 + CH4 Liquid - disinfect with chlorine, aerate, QC (count E. coli in water using e.g., membrane filtration like you did in lab) discharge to body of water. Remaining sludge – land application as fertilizer BIO 208 Unit 4 – Microbes in Health and Disease 2. Drinking Water Treatment Q. What are the goals of drinking water treatment? A. 1. decrease turbidity 2. eliminate taste and odor 3. reduce chemicals 4. remove potentially pathogenic microbes In the US, drinking water usually comes from Steps in a Typical Water Treatment Facility 1. Source – water from source moves to a sedimentation basin where sand and gravel are removed. Turbidity will be decreased (clarity improves) 2. Clarify – water moves next to a clarifier where chemicals are added to create a “floc”. Flocs 3. Filter – clarified water is filtered to remove the flocs containing organics and particles including microorganisms. 4. Disinfect- to kill any remaining microorganisms - chlorination is most common disinfectant of treated water, kills most microbes w/in ____________ min. (some communities use ozone). Problems w/ chlorination – residual chlorine in water – cysts of protozoan pathogens like Giardia and Cryptosopridium 5. Quality control (QC) – determine counts of coliform bacteria remaining in the treated drinking water. Must be _______________________ 6. Distribute – 3 BIO 208 Unit 4 – Microbes in Health and Disease 3. Protection of Great Lakes Recreational Water The Great Lakes have more than ____________ miles of coastline Michigan has over __________ miles of coastline The Michigan coastline has ________ public access beaches Q. How does fecal material gets into beach water A. 1. 2. 3. 4. Human source fecal contamination is In Michigan, beach water quality is regulated by _______________________________________. The threshold ____________________________________________ – if thresholds are exceeded, swim advisories may be posted or beaches closed. 4 BIO 208 Unit 4 – Microbes in Health and Disease Lectures 21-26 will introduce you to aspects of medical microbiology – good stuff for MCAT, PA admissions test, etc. B. Medical Microbiology 1. Disease Transmission and Epidemiology – Chapter 14 These notes should be reviewed prior to the class on Disease Transmission and Epidemiology. We will NOT go over this material in class (we are doing something very different today), but it is essential for your understanding of what we will be covering in class. Disease - change from a state of health a. Terminology related to infectious diseases Etiology – the cause of a disease Etiological agent –microorganism that causes the disease (same as pathogen) Pathogen – microorganism that is capable of causing disease Pathology – the study of disease Pathogenesis – the manner in which a disease develops and progresses Infection – invasion or colonization of the body by a pathogen Incubation – the time interval between infection and the first appearance of signs and symptoms Symptom – A subjective indication of a disease (something you, the patient, experiences), such as feeling hot, tired, achy, nauseous Sign – An objective finding, usually detected on physical examination, from a laboratory test, or x-ray (etc.) that indicates the presence of abnormality or disease, such as elevated body temperature (fever), increased respiration rate, elevated white blood cell count, fluid in the lungs, etc. Epidemiology – the study of disease in populations a. Terminology related to epidemiology Endemic = disease that is constantly present in a population (e.g., measles) Epidemic = an unusually large number of cases (every winter we see an epidemic of Influenza) Outbreak = a cluster of cases in a short time period (currently, avian influenza in southeast Asia) Pandemic = an epidemic that spreads worldwide (what we fear may happen with avian influenza) 5 BIO 208 Unit 4 – Microbes in Health and Disease 6 b. Reservoirs - where pathogens persist, a continual source of the organism that can fuel cases i. human reservoirs of disease – the primary reservoir of most diseases of humans is the human body itself symptomatic – a person exhibiting signs and symptoms of disease and is capable of infecting others Ex. someone with norovirus gastroenteritis (nausea, vomiting) asymptomatic carriers – a person that is not exhibiting signs and symptoms, apparently healthy, but infected and infectious to others. Ex. people infected with gonorrhea or herpes may be asymptomatic but are still infectious ii. nonhuman reservoirs of disease zoonoses - diseases of animals that can be transmitted to humans Ex. rabies, salmonellosis iii. environmental reservoirs soil (botulism, tetanus), water (Legionnaire's, cholera), etc iv. hospitals and hospital personnel as reservoirs, esp. of antibiotic resistant microorganisms c. Transmission – how pathogens are spread i. by contact a) direct contact – also called person-to-person contact- when 1 person physically touches another Ex. touching (MRSA infections), sexual contact (STIs) b) indirect - via inanimate objects = fomites – some examples include door knobs, telephones, computer keyboards, tv remotes, etc Ex. cold viruses and Influenza c) droplet transmission – in droplets coming from the respiratory system (sneezes, coughs) Ex. tuberculosis, Influenza, SARS ii. by food, water, or fecal contaminated material (fecal-oral) gastrointestinal pathogens incl. waterborne pathogens a) ingestion b) cross-contamination of food preparation materials Ex. salmonellosis, shigellosis, cholera BIO 208 Unit 4 – Microbes in Health and Disease iii. airborne (similar to droplet transmission) Ex. anthrax, histoplasmosis iv. by vectors a) mechanical - vector transfers microbes from one host to another. Ex. housefly, fleas b) biological - vector is required in microbe's life cycle Ex. mosquitoes v. nosocomial – acquired as a result of being hospitalized, from the hospital environment or contact with hospital personnel or other patients. Significant problem!!! 5-15% of all hospitalized patients will develop a nosocomial infection! 7 BIO 208 Unit 4 – Microbes in Health and Disease 8 2. Significant or Interesting Human Diseases Key to Understanding Infectious Diseases: • • • • • Microbes are as old as the planet Humans evolved under the selective pressure of microbes Microbes see our bodies as just another habitat In all the vast diversity of microbial life, only the smallest fraction of microbes are capable of causing illness For any infection with a potential pathogen, there are a wide variety of possible outcomes Diseases of the Skin General background Main pathogens of the skin Staphylococcus aureus GPC, cat + Streptococcus pyogenes GPC, cat - Skin diseases caused by S. pyogenes Group A Strep (GAS) 1. impetigo 2. erysipelas – infection of dermal layer of skin 3. invasive GAS - approximately 9,000-11,500 cases in the U.S./yr resulting in 1,000-1,800 deaths. Two most severe, least common: a. necrotizing fasciitis (infection of muscle and fat tissue) b. streptococcal toxic shock syndrome (a rapidly progressing infection causing low blood pressure/shock and injury to organs such as the kidneys, liver and lungs). BIO 208 Unit 4 – Microbes in Health and Disease The class pick -*Disease *Agent – *Virulence factors (what factors does this strain have that other strains do not, that makes this one capable of causing disease) *Transmission – *Clinical picture – Treatment – Frequency – Mortality – Prevention – 9 BIO 208 Unit 4 – Microbes in Health and Disease Diseases of the Nervous System General background Nerves Brain The class pick -*Disease *Agent – *Virulence factors - *Transmission – *Clinical picture – Treatment – Frequency – Mortality – Prevention – 10 BIO 208 Unit 4 – Microbes in Health and Disease Diseases of the Cardiovascular or Lymphatic Systems General background The class pick – *Disease *Agent – *Virulence factors - *Transmission – *Clinical picture – Treatment – Frequency – Mortality – Prevention – 11 BIO 208 Unit 4 – Microbes in Health and Disease Diseases of the Respiratory Tract System – upper versus lower Main Diseases & Pathogens of Upper Respiratory Tract (URT) Defenses of URT– very well defended - multiple defenses - chemical, immunological, and microbial. Nose Rhinitis (cold) 100% viral Rhinovirus Coronavirus, Adenovirus Throat Pharyngitis (sore throat) 70% viral Adenovirus EBV, Herpes, Coxsackie S. pyogenes, C. diphtheriae, H. influenzae 30% bacterial Main Diseases & Pathogens of Lower Resp. Tract (LRT) Defenses of the LRT – defenses diminish with depth into the lower respiratory system - ciliated epithelial cells, cough reflex, alveolar macrophages Trachea Whooping cough Influenza Bronchi Acute bronchitis Lungs Acute infections Pneumonia Respiratory Distress Chronic infections Tuberculosis bacterial viral Bordetella pertussis Influenza virus 50% viral 50% bacterial Adenovirus Mycoplasma, S. pneumoniae, H. influenzae bacterial viral viral S. pneumoniae (a.k.a pneumonococcus) Adenovirus, Influenza virus Hantavirus, SARS bacterial fungal M. tuberculosis Aspergillus, Histoplasma 12 BIO 208 Unit 4 – Microbes in Health and Disease 13 Example of an Acute Lower Respiratory Infection: Influenza We will talk about: 1. seasonal flu 2. pandemic flu *Disease - Influenza - “Flu” *Agent - Influenza virus (Orthomyxoviridae); enveloped RNA virus 3 types infect humans (C, B, A - arranged least to most significant) Influenza type A - Responsible for regular outbreaks, including pandemics. Influenza A viruses also infect domestic animals (pigs, horses, chickens, ducks) and some wild birds, especially shorebirds and waterfowl. Influenza A viruses, which cause more severe human illness, are further categorized into subtypes on the basis of two surface antigens: hemagglutinin (H) and neuraminidase (N). Among all Influenza viruses (human and animal) there are 14 major H proteins and 9 major N proteins forming 144 different combinations of H+N. * Virulence 1. kills cells of the trachea (may result in secondary bacterial infections of the respiratory system (acute ear infections and pneumonia, both due to Streptococcus pneumonia are the most common complications of influenza infection) 2. makes a protein that inhibits the immune system 1. Seasonal Flu * Transmission via respiratory droplets released when an infected person coughs or sneezes. enters body thru mucous membranes of eyes, nose, mouth. binds to receptors on non-ciliated cells of the respiratory epithelium and then enters those cells via receptor-mediated pinocytosis incubation 1-4 days, average = 2 days. contagious from 1 day prior to symptoms (before you know you are sick) and for another 5 days after symptoms develop. * Clinical Picture Uncomplicated influenza illness is characterized by the abrupt onset of constitutional and respiratory signs and symptoms [Constitutional - fever, myalgia (= body aches), headache, malaise (= overall feeling of unwell). Respiratory - nonproductive cough, sore throat, and rhinitis]. Influenza illness typically resolves after a limited number of days for the majority of persons, although cough and malaise can persist for >2 weeks. The risks for complications, hospitalizations, and deaths from influenza are higher among persons aged >65 years, young children, and persons of any age with certain underlying health conditions. BIO 208 Unit 4 – Microbes in Health and Disease * Treatment Some few, specific anti-viral drugs: Amantadine and Rimantadine - These drugs inhibit one of the viral matrix proteins that are used to get viral RNA into the cytoplasm of the target cell. They work against A types only and resistance to these drugs evolves quickly. Zanamivir (Relenza®) and Oseltamivir (Tamiflu®) - These drugs block the neuraminidase and thus inhibit release of virus progeny from the infected cell. Spraying zanamivir into the nose or inhaling it shortens the duration of disease symptoms by 1-3 days. Yearly flu vaccine (more below) Frequency 20-50% of American population infected and 10-20% with symptomatic illness every year. Morbidity and Mortality In US, 114,000 hospitalizations (>57% in people under age 65) and ~40,000 deaths/year – due to secondary bacterial infections and also primary influenza pneumonia, where the Influenza virus infects cells of the lungs in addition to the trachea. ***Special topic of importance *** Why is it you can get influenza multiple times? (in theory you are susceptible every year!) Influenza virus is an RNA virus and its genome is made up of 8 RNA segments (a segmented genome is unusual). During replication the RNA is copied into RNA by an RNA polymerase. RNA polymerase has no proof-reading ability; it makes mistakes (i.e., produces mutations). These mutations cause changes in the surface proteins (the H or the N). Point mutations = a mutation in the RNA genome caused by one wrong RNA nucleotide base in the RNA sequence - will produce a slight, slight alteration in the surface protein. Antibodies (specific to H and N surface proteins) that your body produced to fight previous influenza infections do not recognize these slightly altered surface antigens very well, so your immune response is delayed, you become ill. This gradual change in the surface protein over time is called antigenic drift responsible for yearly, seasonal epidemics. 14 BIO 208 Unit 4 – Microbes in Health and Disease There are several different types of influenza viruses circulating and different variants within virus types, and the same type of flu virus does not necessarily circulate each year. A person's immunity to the surface antigens reduces the likelihood of infection and severity of disease if infection occurs. If someone was infected with the Fujian strain of Influenza A (H3N2) that predominated last season, they are likely to have some natural immunity that will give them protection if they are exposed to the Fujian strain or a closely related H3N2 strain again this season, but no or little immunity to an unrelated strain. Frequent development of antigenic variants through antigenic drift is the basis for seasonal epidemics and the reason for the usual incorporation of > 1 new strains in each year's influenza vaccine (see table at end of lecture). 2. Pandemic Flu When flu illness occurs worldwide is referred to as pandemic flu. Pandemic flu occurs when the human population has no or limited immunity to an influenza virus because either the H or N surface protein is entirely new. Pandemic strains of influenza are created by a genetic event referred to as recombination. Recombination - Two different Influenza strains with different H and N antigens co-infect the exact same host cell. During packaging of viral progeny, the 2 strains will exchange an entire segment of RNA, which will result in a tremendous change in the surface protein. This abrupt change in surface protein is called antigenic shift responsible for pandemics. 15 BIO 208 Unit 4 – Microbes in Health and Disease The class pick – *Disease *Agent – *Virulence factors - *Transmission – *Clinical picture – Treatment – Frequency – Mortality – Prevention – 16 BIO 208 Unit 4 – Microbes in Health and Disease For Your Information – additional information on Influenza virus and Influenza disease How Influenza viruses are named: Ex. Influenza A/Singapore/6/86/H1N1: TYPE of influenza TOWN where first isolated A SINGAPORE NUMBER YEAR of isolates of isolation isolated 6 TYPE of H and N 86 (H1N1) Composition of the Trivalent (= 3 flu strains) Vaccine Last 10 years Season H1N1 H3N2 Type B 02–03 A/New Caledonia/20/99 A/Moscow/10/99 B/Hong Kong/330/01 03–04 A/New Caledonia/20/99 A/Moscow/10/99 B/Hong Kong/330/01 04–05 A/New Caledonia/20/99 A/Fujian/411/02 B/Shanghai/36/02 05–06 A/New Caledonia/20/99 A/California/7/04 B/Jiangsu/10/03 06-07 A/New Caledonia/20/99 A/Wisconsin//6705 B/Malaysia/2506/04 Influenza A/New Caledonia/99 was discovered and characterized by former CMU student Luke Daum, who now owns his own company called Longhorn Vaccines and Diagnostics. He is an international expert on Influenza. 07-08 A/Solomon Islands/3/26 A/Wisconsin/67/05 B/Malaysia/2506/04 08-09 A/Brisbane/59/07 A/Brisbane/10/07 B/Florida/4/06 09-10 A/Brisbane/59/07 A/Brisbane/10/07 B/Brisbane/60/08 10-11 A/California/7/09 A/Perth/16/09 B/Brisbane/60/08 A/California/7/2009 (H1N1) is the pandemic strain that the media called “swine flu” 11-12 A/California/7/09 A/Perth/16/09 B/Brisbane/60/08 The World Health Organization began in February to hold meetings to determine the composition of the 2012-2013 vaccine. 17 BIO 208 Unit 4 – Microbes in Health and Disease 18 Recent flu pandemics Year 1580 1874 1889-90 1900 1918-20 1933 1940 1957-58 1968-69 1976-77 2009 HN type (H3N8) (H2N2) (H3N8) (H1N1) Strain ? ? ? ? ? (H2N2) (H3N2) (H1N1) (H1N1) A/Singapore/57 A/Aichi/68 A/New Jersey/76 A/California/09 Name of pandemic first Influenza pandemic of recorded history Asiatic (Russian) Flu pandemic ”Spanish” Flu pandemic Influenza viruses were finally discovered US military began the first Influenza vaccinations "Asian" Flu pandemic "Hong Kong" Flu pandemic "Swine" Flu – turned out to be a false scare 3,900 deaths in U.S. in 1st 6 months. Since 1977, Influenza A (H1N1) and Influenza A (H3N2) viruses have been in global cocirculation. In 2002, Influenza A (H1N2) viruses that probably emerged after genetic recombination between (H3N2) and (H1N1), viruses began circulating widely, causing an increase in morbidity and mortality, but not a true pandemic. Avian Influenza (= Bird Flu) Bird flu is caused by avian influenza viruses. These flu viruses occur naturally among birds. Wild birds worldwide carry the viruses in their intestines, and among birds the virus is transmitted in the feces, but avian influenza is usually not fatal to wild birds. However, it is very contagious among birds and can make some domesticated birds (chickens, ducks, and turkeys) very sick and kill them. The risk from bird flu is generally low to most people because the viruses occur mainly among birds and do not usually infect humans. However, during an outbreak of bird flu among poultry (domesticated chicken, ducks, turkeys), there is a possible risk to people who have contact with infected birds or surfaces that have been contaminated with excretions from infected birds. Several cases of human infection with bird flu viruses have occurred since 1997, the most recent outbreak began in 2003. In October 2003, an epidemic of influenza in chickens began sweeping through several countries in the Pacific Rim (Vietnam, Thailand, Japan, China, South Korea, Cambodia). The virus is H5N1. The H5 molecule is common among bird influenza viruses but has not been seen on flu viruses that cause human epidemics. As a glance at the tables above will show, humans have had long experience with infections and vaccines by both H1 and H3 flu viruses. But the human population has absolutely no immunity against any H5 viruses. Clinical Picture - Symptoms of avian influenza in humans have ranged from typical human influenza-like symptoms (fever, cough, sore throat, and muscle aches), to eye infections, pneumonia, severe respiratory diseases (such as acute respiratory distress syndrome), and other severe and life-threatening complications. Mortality - currently 63%. BIO 208 Unit 4 – Microbes in Health and Disease Sexually Transmitted Infections (STI = STD = VD) MMWR TABLE II. Provisional cases of selected notifiable diseases, United States. 2011 Reporting Area Population Hepatitis B Syphilis Gonorrhea Chlamydia Michigan 10,071,822 80 243 12,207 47,003 U. S. 312,856,000 2,399 12,325 291,262 1,272,762 What all STIs have in common: Transmission – direct mucosal contact with infected individual Asymptomatic Can be acquired multiple times Having one makes it much more likely you will have/get others Can cause infertility and other permanent complications Prevention – Abstinence – the only guarantee Monogamy Latex condoms Regular screening – all sexually active women should be screened for STIs every 6 months! 19 BIO 208 Unit 4 – Microbes in Health and Disease The class pick – *Disease *Agent – *Virulence factors - *Transmission – *Clinical picture – Treatment – Frequency – Mortality – Prevention – 20 BIO 208 Unit 4 – Microbes in Health and Disease The class pick – *Disease *Agent – *Virulence factors - *Transmission – *Clinical picture – Treatment – Frequency – Mortality – Prevention – 21 BIO 208 Unit 4 – Microbes in Health and Disease The class pick – *Disease *Agent – *Virulence factors - *Transmission – *Clinical picture – Treatment – Frequency – Mortality – Prevention – 22 BIO 208 Unit 4 – Microbes in Health and Disease Infectious Disease of the Gastrointestinal (GI) Tract Digestive system overview CDC estimates that each year ~ 1 in 6 Americans (or 48 million people) gets sick, 128,000 are hospitalized, and 3,000 die of food borne diseases. Focus Syndrome - Gastroenteritis = inflammation of stomach & intestines - extremely common – symptoms include primarily diarrhea; sometimes nausea, vomiting, crampy abdominal pain – caused by a diverse assortment of bacterial, viral, and protozoan pathogens. General mechanisms by which microbes cause disease in the GI: A. Produce toxins B. Adhere to and damage intestinal microvilli C. Invade intestinal epithelial cells A. Diseases due to toxin production: 1. Toxin production only (no colonization of intestines) = Bacterial Food Poisoning bacteria need not enter the body they secrete toxins into the food that you ingest these toxins aren’t destroyed by heating Example organisms that cause food poisoning Bacillus cereus, Clostridium botulinum (6 cases in 2010), Clostridium perfringens, Staphylococcus aureus. Toxin contaminated foods do not look, smell, or taste bad! 23 BIO 208 Unit 4 – Microbes in Health and Disease The class pick – *Disease *Agent – *Virulence factors - *Transmission – *Clinical picture – Treatment – Frequency – Mortality – Prevention of food borne disease at end of lecture. 24 BIO 208 Unit 4 – Microbes in Health and Disease 2. Colonization of intestines followed by toxin production – Vibrio cholerae The class pick – *Disease *Agent – *Virulence factors - *Transmission – *Clinical picture – Treatment – Frequency – Mortality – 25 BIO 208 Unit 4 – Microbes in Health and Disease B. Disease due to microbes that adhere to, enter, and damage intestinal microvilli – Shigella, E. coli O157:H7, Campylobacter, Rotavirus and Norwalk virus (of cruise ship fame), Entamoeba histolytica. The class pick – *Disease *Agent – *Virulence factors - *Transmission – *Clinical picture – Treatment – Frequency – Mortality – 26 BIO 208 Unit 4 – Microbes in Health and Disease C. Disease due to microbes that adhere to and then invade across intestinal epithelial cells; may spread to deeper tissues – Salmonella, Hepatitis A, Reovirus, Enterovirus. The class pick – *Disease *Agent – *Virulence factors - *Transmission – *Clinical picture – Treatment – Frequency – Mortality – 27 BIO 208 Unit 4 – Microbes in Health and Disease Prevention and Control of Food borne Illness Careful food production, handling of raw products, preparation of finished foods Near Future Industry Advances 1. Chlorinating drinking water sources for food animals 2. Sanitary slaughter and meat processing 3. Irradiation of raw products At home 1. Wash hands (w/ soap, 20 sec) 2. Thaw in refrigerator or microwave 3. Don't cross-contaminate cooked w/raw 4. Wash fruits & veggies - even pre-washed 5. Wash knives 6. Wash countertops, cutting boards, etc. in dilute bleach 7. Clean sponges daily 8. Separate towels 9. Pay attention to "use-by" dates 10. Don't buy "bad" cans 11. Immediately refrigerate leftovers - shallow (less than 2") - less than 40ºF 28