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University of New Hampshire Confocal Imaging Center Rudman Hall Room 340, 862-0632 Confocal Laser Scanning Microscopy Exciting, State-of-the-Art Equipment Used in Many Disciplines Biological Research: Fixed or Living Wholemounts, Individual Cells, Sections A. Localization and co-localization of molecules of interest including specific nucleotide sequences (fluorescence in situ hybridization – FISH) and proteins FISH of rat hypothalamic supraoptic nucleus sections hybridized with FITC-labeled peptidyl-glycine -amidating monooxygenase anti-sense probe (1), TRITC-labeled arginine vasopressin anti-sense probe (2), or both probes (3) showing co-localization (green and red co-localization appears yellow). From Grino & Zamora (1998) J.Histochem. Cytochem. 46:753-759. B. Determination of molecular proximity otherwise well beyond the resolution of light microscopy using FRET (fluorescence resonance energy transfer) Single RNA molecules labeled with a FRET donor dye and acceptor dye in exon sequences on either side of an intron. The splicing reaction that removes the intron sequence requires magnesium and the protein cofactor CBP2. When donor and acceptor dyes are relatively distant, as when the intron is unfolded, only the donor dye emits light (green). When donor and acceptor dyes are close (2-6 nm), as when the intron is folded, energy transfer from donor to acceptor results in only the acceptor dye emitting light (red). From Zhuang Lab, Harvard University. C. Morphogenetic and anatomical investigations Wholemount preparations of millipede embryos at successive stages of development, stained with actinspecific rhodamine-labeled phalloidin. Whole embryos (AE) and the first 2-3 legs (F-J) are shown. Such preparations were used to study neurogenesis in myriapods as compared with neurogenesis in insects and chelicerates. From Dove & Stollewerk (2003) Development 130:2161-2171. D. Molecular or cellular dynamics studied by FRAP (fluorescence recovery after photobleaching) with living cells COS-7 cells expressing a vesicular stomatitis virus G protein-green fluorescent protein (VSVG-GFP) chimaera. The VSVG-GFP is retained in endoplasmic reticulum (ER) membranes. Irreversible photobleaching of the GFP within the boxed regions (middle photos), followed by a 5 min recovery period, demonstrates that VSVG-GFP is very mobile within ER membranes (top panel), though not when tunicamycin is present (bottom panel). From Nehls et al. (2000) Nat. Cell Biol. 2:288-295. FRAP on a biofilm of 2 strains of Pseudomonas aeruginosa, a wild type labeled with yellow fluorescent protein and a pilA mutant labeled with cyan fluoresecent protein (A). After photobleaching a swath through a mixed colony (B), only wild type bacteria had migrated into the bleached region after 40 min (C), indicating that pilA is required for motility. From Palmer et al. (2006) Handbook of Biological Confocal Microscopy 3rd ed. (ed. J.B. Pawley) pp. 870-888. Materials Research Morphology changes during the curing of a mixture of bisphenol-A diglycidyl ether epoxy resin and poly(3-aminopropylmethylsiloxane). All images at same magnification. From Cabanelas et al. (2005) Polymer 46:6633-6639. Microcircuit Research Dried emulsion of bitumen (petroleum product component of asphalt – dark droplets) and latex polymer (fluorescent matrix). Taken from a study interested in producing more resistant and environmentally-friendly asphalt (Forbes et al. (2001) J. Microsc. 204:252-257). Demixing of a colloid-polymer mixture (fluorescent poly(methylmethacrylate) spheres and polystyrene, respectively) in decalin at 6 s (a), 15 s (b), 50 s (c), and 102 s (d) after homogenization. Insets are the discrete Fourier transforms. From Aarts & Lekkerkerker (2004) J. Phys.: Condens. Matter 16:S4231-S4242. Portion of an integrated circuit showing damage (near center) resulting from electrical overstress. The same region is shown in both a single z-plane image and a 3-D reconstruction from a zstack of images. From Miranda & Saloma (2003) Applied Optics 42:6520-6524. And this is just the tip of the iceberg!