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POPULATION GENETICS © 2016 assoc. Prof. DVM Eva Bártová, Ph.D. POPULATION populus = people Definition: group of organisms of one species that interbreed and live in the same place at the same time GAMETE FOND = set of gametes in population GENOFOND (gene pool) = set of genes (alleles) in population genome POPULATION PARAMETERS (characteristics) SIZE small populations X large populations EFFECTIVE SIZE What is generation interval in man? GENERATION INTERVAL GENOTYPE and ALLELIC FREQUENCIES paternal maternal HARDY-WEINBERG EQUILIBRIUM (LAW) In 1908 Godfrey Hardy (mathematics) Wilhelm Weinberg (physician) Frequency of alleles and genotypes in population will remain constant from generation to generation if population is stable and in genetic equilibrium. For gene with 2 alleles: (p + q)2 = p2 + 2pq + q2 Allele frequency Genotype frequency Animation: http://www.phschool.com/science/biology_place/labbench/lab8/intro.html FREQUENCY OF ALLELE p = frequency of the dominant allele (A) q = frequency of the recessive allele (a) p+q=1 FREQUENCY OF GENOTYPE P (p2) = frequency of AA (homozygous dominant) H (2pq) = frequency of Aa (heterozygous) Q (q2) = frequency of aa (homozygous recessive) P+H+Q=1 p2 + 2pq + q2 = 1 Females A (p) Males a (q) A (p) AA (p²) Aa (pq) a (q) aa (q²) Aa (pq) GENETICS TASKS Population is in HW equilibrium. The allelic frequency for blue eye colour is 0.6. What is frequency of people with blue eyes? In the population, there are 36% of people with blue eyes and 64% with brown eyes. How many % of the brown eye people are homozygotes and heterozygotes? GENETICS TASKS Allele for black color in pig is recessive, white dominant. What is the number of heterozygotes in this population? n = 16 pigs 4 black, 12 white calculate q2 (4/16 = 0.25 = 25%) find q find p find 2pg GENETICS TASKS Gene I (blood system AB0) exists in population in three forms (IA, IB, i). Frequence of allele IB(q) is 0.4 and frequency of allele i(r) is 0.4. IA (p) = ?? Calculate genotype and phenotype frequencies For gene with 3 alleles: (p + q + r)2 = p2 + 2pq + q2 + 2pr + 2qr + r2 = 1 r2 (ii) = 0.42 = 0.16 p2 (IAIA) = 0.22 = 0.04 2pr (IAi) = 2x0.2x0.4 = 0.16 q2 (IBIBi) = 0.42 = 0.16 2qr (IBi) = 2x0.4x0.4 = 0.32 2pq (IAIB) = 2x0.2x0.4 = 0.16 Blood groups in Europe 0 0.16 = 16% A 0.20 = 20% B 0.48 = 48% AB 0.16 = 16% 0 A B AB 40% 40% 10% < 10 % Conditions for population in HW EQUALIBRIUM population is enough large mating of individuals of same generation population is panmictic NO natural selection NO mutation NO genetic drift NO gene flow if one conditions is broken, evolutionary force is changing allele frequencies and population is not in HW equilibrium natural populations probably seldom meet all of these conditions You can verify if population is in HW equalibrium by 2 – test TYPE OF REPRODUCTION 1. 2. 3. 4. INBREEDING AUTOGAMY OUTBREEDING PANMIXIA 1. INBREEDING (when close relatives mate) 2. AUTOGAMY (self-fertilization) - extreme form of inbreeding - characteristic of many flowering plants and some hermaphroditic animals (freshwater snails) genotype frequencies are changed increasing of the frequency of homozygotes Significance: cultivation of plant and animal breeding (lines with special characteristic, laboratory animals) Model of autogamic population generation heterozygote homozygote negative aspect in medicine - recessive homozygotes are usually carrier of recessive diseases (př. hemophilia, daltonism) How the Color Deficient Person Sees the World Normal Protanope Normal Deuteranope Protanope Tritanope Deuteranope 3. OUTBREEDING - when unrelated individuals mate - influenced by SELECTION Selection: differential survival and reproduction of individuals (fitness) in a population due to trait differences change in allelic and genotype frequencies important for evolution FITNESS reproductive efficiency - fertility, vitality, resistance to diseases, survival in unfavourable conditions Industrial melanism - peppered moth (Biston betularia) unpolluted environment polluted environment 4. PANMIXIA (PANMICTIC POPULATION) random x nonrandom mating http://www.phschool.com/science/biology_place/labbench/lab8/samprob2.html MUTATION change in allelic frequencies important for evolution MUTATIONS: spontaneous x induced (effect of mutagene) repeated x non repeated GENETIC DRIFT changes in gene pool of small population due to errors in propagation of alleles from one generation to next change in allelic frequencies between generations (some alleles are fixed, other eliminated) increasing of homozygotes decreasing of genetic variability Bottleneck Effect – population undergoes a drastic reduction in size as a result of genetic drift (few alleles pulled from the bottle will not represent the same allele frequency as in the bottle) changing of allelic frequencies population is reduced in number (e.g. hurricane kills most individuals in population) it is completely arbitrary and unrelated to phenotype who lives and who dies GENE FLOW (MIGRATION) occurs when alleles are exchanged between 2 populations gain or loss of alleles from a population due to migration of fertile individuals or from the transfer of gametes change in allelic and genotype frequencies could increase genetic variability in population Gene flow: unidirectional x mutual unrepeated x periodic x permanent Gene flow between species through hybridization gene transfer from bacteria or virus to new hosts PRACTICAL APLICATION OF POPULATION GENETICS 1. GENETIC DISEASES study of the frequencies of genetic diseases in populations treatment (prevention) of genetic diseases Genetic diseases are influenced by: mutation - increases frequency of alleles that cause diseases selection - reduces frequency of these alleles genetic drift Inbreeding gene flow 2. PROBLEMS IN SMALL POPULATIONS rare animals and animals in danger animals in ZOO Genetic equalibrium is influenced by: genetic drift, inbreeding, selection fixation of unfavourable alleles increasing of homozygotes decreasing of genetic variability decreasing of fitness - disease Adventage: populations of animals in danger have usually long generation interval → number of homozygotes is increased slowly How to solve this problem? 3. STUDY OF EVOLUTION (phylogeny) Phylogenetic tree illustrate evolutionary relationship among biological species (or other taxonomic groups) organisms are classified descending from common ancestor built from morphological data (e.g., beak shape, number of legs, etc.) or molecular data (DNA sequences and protein sequences). neutral mutation: change into positive or negative mutation is influenced by genetic drift speed of change is known as molecular clock Jean-Baptiste de LAMARCK (1744-1829) LAMARCKISM - first scientific explanation of evolution organisms possess inborn ability and will to change towards more perfect and complex forms ENVIRONMENTALISM – guiding force of evolution are changes in biotic and abiotic environment Main postulates: 1. change of environment evokes active need for the change of organisms which is achieved by using organs (erroneous) 2. acquired adaptations are transferred by heredity to offspring (neck of a giraffe) (erroneous) Charles R. DARWIN (1809-1882) English naturalist, at the age of 22, a five-year voyage of discovery around the world on the H.M.S. Beagle under Cpt. R. FitzRoy GALÁPAGOS DARWINISM origin of species by means of natural and sexual selection Main postulates: common origin of organisms (branching and divergence of evolutionary lineages) gradualism (slow and continual development) multiplication of species natural selection (major guiding force of evolution) sexual selection heritable variation within populations Ch. Darwin: On the origin of species by means of natural selection, or the preservation of favoured races in the struggle for life (London, 1859) Ch. Darwin: The descent of man, and selection in relation to sex (London, 1871) NEO-DARWINISM 20th century synthesis with Mendelian genetics and population genetics population is important (variable gene pool, continues in time), individual is not important (stable genotype, short-lived) synthesis of matematic, genetic, systematic, paleontology, biochemistry, ecology, etology… genecentric aspect – selection of alleles, evolution adventage of some allele in contrast to others (R. Dawkins) G. J. MENDEL (1822-1884) Richard DAWKINS (1941 - ) Professor at Oxford BASIC MECHANISMS OF EVOLUTION heritable variability – precondition for natural selection source of variability: mutations and recombinations changing environment - drives evolution by means of adaptations natural (sexual) selection – carriers of advantageous mutations have more offsprings…. Asexual reproduction – advantage in stable environment Sexual reproduction – advantage in changing environment – greater genetic variability by recombination (random): 1) crossing-over during meiosis 2) segregation of chromosomes during meiosis 3) fertilisation MICROEVOLUTION changes in frequencies of different allelic forms of genes within (small) population short generation interval (short time of this evolution) Mechanisms: inbreeding and genetic drift Examples: resistance of bacteria to antibiotics parasites x anthelminthics, insect x insecticides indrustrial melanism Long-term results of microevolution subpopulations with different natural selection → subspecies → new species