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Restriction Digest of pAMP and pKAN
Restriction Digest of pAMP and pKAN

... There are several methods used to analyze DNA. The purpose of this laboratory is to introduce one method commonly used to analyze a DNA plasmid (circular, double-stranded DNA). The protocol uses a mixture of two restriction enzymes, BamHI and HindIII, to digest (cut) two plasmids and electrophoresis ...
A 5000-Fold Increase in the Specificity of a Bacterial
A 5000-Fold Increase in the Specificity of a Bacterial

... Phosphotriesterases (PTEs) have been isolated from a range of bacterial species, including Agrobcaterium radiobacter (PTEAr), and are efficient enzymes with broad substrate ranges. The turnover rate of PTEAr for the common organophosphorous insecticide malathion is lower than expected based on its p ...
Kinetics and mechanisms of reactions catalyzed by
Kinetics and mechanisms of reactions catalyzed by

... interfacial activation of lipases asserts that a conformational change in the enzyme structure towards an activated form occurs upon contact with an oil/water interface; such dramatic increase in catalytic efficiency upon contact with natural substrates can putatively be viewed as an extension of Ko ...
Biosynthesis of Pyrimidines
Biosynthesis of Pyrimidines

Isolation, Cloning, and Sequencing of the Salmonella typhimurium dd1A Gene with Purification and Characterization of its Product, D-Alanine:D-Alanine Ligase (ADP Forming).
Isolation, Cloning, and Sequencing of the Salmonella typhimurium dd1A Gene with Purification and Characterization of its Product, D-Alanine:D-Alanine Ligase (ADP Forming).

... Figure 1). The temperature-sensitive mutation in ST640, however, was never backcrossed into a nonmutagenized background. Thus, it has not been shown whether or not ddl is an essential structural gene for cell wall synthesis and cell viability in E. coli. The goal of this work, therefore, was 2-fold: ...
Glycolytic Enzymes Associate Dynamically with
Glycolytic Enzymes Associate Dynamically with

... phase. Products of catalysis are released into the bulk aqueous phase and arrive at the next enzyme in the metabolic sequence by passive diffusion. However, it is increasingly apparent that many enzymes are not free in solution but rather interact with membrane structures (Martin et al., 2005) or wi ...
Regulation of pyruvate, orthophosphate dikinase by ADP
Regulation of pyruvate, orthophosphate dikinase by ADP

... component in addition to an electrostatic one since substitution of Thr by Tyr or Phe (but not Val), two neutral amino acids with bulky side chains, also dramatically inhibits dikinase activity (Table 2). However, high-resolution crystal structures of these wild-type and mutant C4 enzymes are needed ...
CARBOHYDRATE METABOLISM
CARBOHYDRATE METABOLISM

... Major pathways of carbohydrate metabolism 1. Glycolysis (Embden-Meyerhof pathway): The oxidation of glucose to pyruvate and lactate.(Located in cytosol) 2. Citric acid cycle (Krebs cycle or tricarboxylic acid cycle): The oxidation of acetyl CoA to CO2. Krebs cycle is the final common oxidative pathw ...
(EC 2.2.1.1) active in the Calvin cycle of spinach chloroplasts
(EC 2.2.1.1) active in the Calvin cycle of spinach chloroplasts

... the Calvin cycle and the oxidative pentose phosphate pathway (OPPP) of higher-plant chloroplasts. In the Calvin cycle, it catalyses the transfer of a two-carbon ketol group from either D-fructose6-phosphate or D-sedoheptulose-7-phosphate to Dglyceraldehyde-3-phosphate to yield D-xylulose-5phosphate ...
Fermentation - cloudfront.net
Fermentation - cloudfront.net

... Name the two types of fermentation. How much ATP does glycolysis create? How much ATP does fermentation create? Which molecule is broken down during glycolysis? A buildup of which molecule causes sore muscles? Which waste molecules are created by alcoholic fermentation? 7) Is fermentation aerobic or ...
2007 Exam 3 1. The goal of the oxidative phase of the pentose
2007 Exam 3 1. The goal of the oxidative phase of the pentose

... c. is the reduced form of acetyl CoA that is produced during oxidation of fatty acids with an odd number of carbons. d. a reduced intermediate of the TCA cycle that is formed during when NADH levels are very high. 28. Cells utilize high energy biomolecules because a. they are easily made and store e ...
MS Word file
MS Word file

... A variety of different consensus sequences may be found in the regulatory promoters. Main difference between prokaryotes and eukaryotes is in assembly of ...
Block 1 Unit #3
Block 1 Unit #3

2. CYCLIC AMINOACIDS 2.1. Aromatic
2. CYCLIC AMINOACIDS 2.1. Aromatic

... weight and 45-50% of dry weight) Play important roles in all biological processes Elementary composition: C 51-55%, O 21-23%, N 15-18%, H 6-7%, S 0.3-2.5% Structure - they are – high-molecular (the mass of single-chain protein is 10-50 kilodaltons (350 dal-1000 kdal); multichain protein complexes >2 ...
BIS103-002 (Spring 2008) - UC Davis Plant Sciences
BIS103-002 (Spring 2008) - UC Davis Plant Sciences

... However, do not use the blank sheet for your final answers. If you need more space, use the back of pages 2-12. Write your name on top of each page! Petitions for re-grading will be considered only if you have used permanent ink, unless an addition error has occurred. ...
Biochemical Engineering Prof. Dr. Rintu Banerjee Department of
Biochemical Engineering Prof. Dr. Rintu Banerjee Department of

... Now this amino acids are playing a very important role as far as the mechanism the cell functionality is concerned and that is the reason this amino acids has been classified or symbolized with either three letter digit or with one letter digit say for example, now glycine if we considered glycine a ...
2.3 Carbon-Based Molecules
2.3 Carbon-Based Molecules

... • Proteins are polymers of amino acid monomers. – Twenty different amino acids are used to build proteins in organisms. The body can make 12; others come from foods like meat, beans & nuts. – Amino acids have similar structure: an amine group (NH2) and a carboxyl group (COOH) but differ in side grou ...
Chapter 3: Organic Molecules and life
Chapter 3: Organic Molecules and life

... 2. There are four nitrogenous bases used by DNA: Adenine (A), Thymine (T), Guanine (G), and Cytosine ( C ). RNA uses one called Uracil (U) rather than ...
Amino acids
Amino acids

... chains - Aspartate (Aspartic acid) and Glutamate (Glutamic acid). These amino acids confer a negative charge on the proteins of which they are part. ...
amino acids
amino acids

... chains - Aspartate (Aspartic acid) and Glutamate (Glutamic acid). These amino acids confer a negative charge on the proteins of which they are part. ...
Clinical Chemistry Evaluations in Toxicity Studies
Clinical Chemistry Evaluations in Toxicity Studies

... the kidney has two functionally distinct parts: the glomerulus and the tubule system. The glomerulus acts as a semipermeable diffusion membrane while the tubule system acts on the glomerular ultrafiltrate to maintain water and solute homeostasis in the animal. Quantitative and qualitative serum and/ ...
Clinical Chemistry Evaluations in Toxicity Studies
Clinical Chemistry Evaluations in Toxicity Studies

... the kidney has two functionally distinct parts: the glomerulus and the tubule system. The glomerulus acts as a semipermeable diffusion membrane while the tubule system acts on the glomerular ultrafiltrate to maintain water and solute homeostasis in the animal. Quantitative and qualitative serum and/ ...
unit 1: introduction to biology
unit 1: introduction to biology

...  after feeding in the electrons and protons at the electron carrier proteins of The ETC, they are recycled to NAD+ (and FAD) again, while the protons are actively transported across the mitochondrial membrane; as a consequence of this ‘proton-pumping’ process, a so-called proton gradient along the ...
Proteins
Proteins

... including ribosomes, mRNA, and various factors. As the newly synthesized polypeptide chain is released from the ribosome, it folds into its three-dimensional shape. Folded proteins take up a low-energy state that makes the native structure more stable. In most cases the native conformation is reache ...
Adaptation of enzymes to temperature: searching for basic ``strategies``
Adaptation of enzymes to temperature: searching for basic ``strategies``

... Adaptive changes in amino acid sequence: how many are needed, where do they occur, and what types of swaps cause adaptation? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3. Temperature, pH, and proteins: creating an integrated perspective on b ...
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Enzyme



Enzymes /ˈɛnzaɪmz/ are macromolecular biological catalysts. Enzymes accelerate, or catalyze, chemical reactions. The molecules at the beginning of the process are called substrates and the enzyme converts these into different molecules, called products. Almost all metabolic processes in the cell need enzymes in order to occur at rates fast enough to sustain life. The set of enzymes made in a cell determines which metabolic pathways occur in that cell. The study of enzymes is called enzymology.Enzymes are known to catalyze more than 5,000 biochemical reaction types. Most enzymes are proteins, although a few are catalytic RNA molecules. Enzymes' specificity comes from their unique three-dimensional structures.Like all catalysts, enzymes increase the rate of a reaction by lowering its activation energy. Some enzymes can make their conversion of substrate to product occur many millions of times faster. An extreme example is orotidine 5'-phosphate decarboxylase, which allows a reaction that would otherwise take millions of years to occur in milliseconds. Chemically, enzymes are like any catalyst and are not consumed in chemical reactions, nor do they alter the equilibrium of a reaction. Enzymes differ from most other catalysts by being much more specific. Enzyme activity can be affected by other molecules: inhibitors are molecules that decrease enzyme activity, and activators are molecules that increase activity. Many drugs and poisons are enzyme inhibitors. An enzyme's activity decreases markedly outside its optimal temperature and pH.Some enzymes are used commercially, for example, in the synthesis of antibiotics. Some household products use enzymes to speed up chemical reactions: enzymes in biological washing powders break down protein, starch or fat stains on clothes, and enzymes in meat tenderizer break down proteins into smaller molecules, making the meat easier to chew.
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