Variation in biological properties of cauliflower mosaic virus clones
... produced a frame-shift that separated genes II and III by 60 bp. Most CaMV clones studied remained biologically stable producing similar symptoms during subsequent passages. However, one clone (11/3-7) produced two new biotypes during its first passage suggesting that it was relatively unstable. Our ...
... produced a frame-shift that separated genes II and III by 60 bp. Most CaMV clones studied remained biologically stable producing similar symptoms during subsequent passages. However, one clone (11/3-7) produced two new biotypes during its first passage suggesting that it was relatively unstable. Our ...
Structure, function and regulation of pyruvate carboxylase
... biotinylation of apoenzyme to holoenzyme, rather than by gene induction. In contrast, changes in PC specific activity of Rhodobacter capsulatus under different growth conditions are mediated at the level of enzyme synthesis [50]. -Aspartate is known to inhibit PC activity and biotinylation in yeast ...
... biotinylation of apoenzyme to holoenzyme, rather than by gene induction. In contrast, changes in PC specific activity of Rhodobacter capsulatus under different growth conditions are mediated at the level of enzyme synthesis [50]. -Aspartate is known to inhibit PC activity and biotinylation in yeast ...
Automatic identification of topic boundaries in
... repeats and BLAST. The Statistics option displays different measures like; the nucleotide base count, codon count and molecular weight of the sequence. Restriction site analysis: Restriction enzymes (RE) recognize rather short sequences of double stranded DNA as targets for cleavage. Each Restrictio ...
... repeats and BLAST. The Statistics option displays different measures like; the nucleotide base count, codon count and molecular weight of the sequence. Restriction site analysis: Restriction enzymes (RE) recognize rather short sequences of double stranded DNA as targets for cleavage. Each Restrictio ...
Genetics Test 3 Review Presentation
... hydroxyl group (OH). • Nucleotides are linked between the phosphate group at the C-5’ position and the OH group on the C-3’ position. ...
... hydroxyl group (OH). • Nucleotides are linked between the phosphate group at the C-5’ position and the OH group on the C-3’ position. ...
FASTA is a program for database searching by homology. FASTA
... This program uses the BLASTP or BLASTN algorithms for aligning two sequences. In terms of Statistics: BLAST calculates probabilities and this can fail if some assumptions are invalid for that search. There are versions of BLAST for searching nucleic acid and protein databases, which can be used to t ...
... This program uses the BLASTP or BLASTN algorithms for aligning two sequences. In terms of Statistics: BLAST calculates probabilities and this can fail if some assumptions are invalid for that search. There are versions of BLAST for searching nucleic acid and protein databases, which can be used to t ...
Answers to Scoring in Scrabble (English Word Play)
... Lysine rich region could also be a Lysine every other amino acid (KNKNKN) (AA[AG].{3}){4,} the .{3} specifies the intervening codon. To allow some but not all amino acids to occupy this “lysine rich region” we would have to write the regex for each one allowed and separate them with the OR symbol | ...
... Lysine rich region could also be a Lysine every other amino acid (KNKNKN) (AA[AG].{3}){4,} the .{3} specifies the intervening codon. To allow some but not all amino acids to occupy this “lysine rich region” we would have to write the regex for each one allowed and separate them with the OR symbol | ...
Threading-based Protein Structure Prediction
... from non-coding DNA • Search-by-homology: find genes by homology (after translation) to proteins • State-of-the-art systems for gene finding usually combine these strategies Copyright © 2004, 2005 by Limsoon Wong ...
... from non-coding DNA • Search-by-homology: find genes by homology (after translation) to proteins • State-of-the-art systems for gene finding usually combine these strategies Copyright © 2004, 2005 by Limsoon Wong ...
Supplementary material: Additional file 1 Chavali
... are multifunctional, 52 are bifunctional and 20 are trifunctional. Of the remaining eight, seven act on four targets while one (lovastatin) is predicted to interact with six prioritized L. major genes. Importantly, L. major genes not included in the prioritized set of 15 were not co ...
... are multifunctional, 52 are bifunctional and 20 are trifunctional. Of the remaining eight, seven act on four targets while one (lovastatin) is predicted to interact with six prioritized L. major genes. Importantly, L. major genes not included in the prioritized set of 15 were not co ...
Exploring Tomato Gene Functions Based on Coexpression Modules
... investigated various associations in the gene expression of Solanum lycopersicum (tomato) to predict unknown gene functions in an unbiased manner. We obtained more than 300 microarrays from publicly available databases and own hybridizations, and here, we present tomato coexpression networks and coe ...
... investigated various associations in the gene expression of Solanum lycopersicum (tomato) to predict unknown gene functions in an unbiased manner. We obtained more than 300 microarrays from publicly available databases and own hybridizations, and here, we present tomato coexpression networks and coe ...
Alternative isoleucine synthesis pathway in
... isotopomer analysis, enzyme chemistry or cloning methods (Table 1). Two types of genes encoding CimA have been identified and both genes are homologous to homocitrate synthase. CimA was previously reported in an archaeal species (Methanococcus jannaschii, gene MJ1392) (Howell et al., 1999) and recen ...
... isotopomer analysis, enzyme chemistry or cloning methods (Table 1). Two types of genes encoding CimA have been identified and both genes are homologous to homocitrate synthase. CimA was previously reported in an archaeal species (Methanococcus jannaschii, gene MJ1392) (Howell et al., 1999) and recen ...
Document
... DNA contains the information needed to make proteins. However, DNA is too large to leave the nucleus. RNA acts as a set of working instructions for ribosomes to make proteins. This process is also known as gene expression. Gene expression is a regulated process. ...
... DNA contains the information needed to make proteins. However, DNA is too large to leave the nucleus. RNA acts as a set of working instructions for ribosomes to make proteins. This process is also known as gene expression. Gene expression is a regulated process. ...
RevertAid First Strand cDNA Synthesis Kit, #K1621
... Inhibitor, supplied with the kit, effectively protects RNA from degradation at temperatures up to 55°C. First strand cDNA synthesized with this system can be directly used as a template in PCR or real-time PCR. It is also ideal for second strand cDNA synthesis or linear RNA amplification. Radioactiv ...
... Inhibitor, supplied with the kit, effectively protects RNA from degradation at temperatures up to 55°C. First strand cDNA synthesized with this system can be directly used as a template in PCR or real-time PCR. It is also ideal for second strand cDNA synthesis or linear RNA amplification. Radioactiv ...
PDF - Stanford University
... et al. 1996). These studies have been very informative in assigning functional properties to retroelement coding regions and in determining the higher order relationships between retroelement families. However, to more fully understand the nature of evolutionary forces that have shaped retroelement ...
... et al. 1996). These studies have been very informative in assigning functional properties to retroelement coding regions and in determining the higher order relationships between retroelement families. However, to more fully understand the nature of evolutionary forces that have shaped retroelement ...
Popped Secret: The Mysterious Origin of Corn HHMI BioInteractive
... varieties from throughout Mexico. What did their analysis reveal? Select all that apply. A. That teosinte and maize have the same number of chromosomes. B. That maize originated from a variety of teosinte that existed about 9,000 years ago. C. That maize and teosinte could interbreed to produce viab ...
... varieties from throughout Mexico. What did their analysis reveal? Select all that apply. A. That teosinte and maize have the same number of chromosomes. B. That maize originated from a variety of teosinte that existed about 9,000 years ago. C. That maize and teosinte could interbreed to produce viab ...
Sequence ID: ref|WP_006700522.1
... Clone several, using one known to work to find orthologs Use sequence to design primers to clone cDNA ...
... Clone several, using one known to work to find orthologs Use sequence to design primers to clone cDNA ...
A family of diatom-like silicon transporters in the siliceous loricate
... contigs, mostly shorter than 250 bp, encode protein fragments similar to short stretches within this region of the protein, but the fragmentary genome data precludes determination of how many genes they represent. We conclude that D. grandis also has a family of SIT-related genes. The 50 end of the ...
... contigs, mostly shorter than 250 bp, encode protein fragments similar to short stretches within this region of the protein, but the fragmentary genome data precludes determination of how many genes they represent. We conclude that D. grandis also has a family of SIT-related genes. The 50 end of the ...
Custom RT-qPCR Assays and Panels for any Human, Mouse, or Rat
... 9/8/2015)) and corresponding patent claims outside the United States. The purchase of this product includes a limited, non-transferable immunity from suit under the foregoing patent claims for using only this amount of product for the purchaser’s own internal research. The right to use this product ...
... 9/8/2015)) and corresponding patent claims outside the United States. The purchase of this product includes a limited, non-transferable immunity from suit under the foregoing patent claims for using only this amount of product for the purchaser’s own internal research. The right to use this product ...
DNA Structure Changes Coupled to Protein Binding
... complexes underscore the more active role of DNA, which is subject to various conformational changes more often than the associated proteins. It is now generally accepted that the linear sequence of nucleotides represents only one level at which the information encoded in DNA determines the outcome ...
... complexes underscore the more active role of DNA, which is subject to various conformational changes more often than the associated proteins. It is now generally accepted that the linear sequence of nucleotides represents only one level at which the information encoded in DNA determines the outcome ...
Identification of a Cis-Acting Element of ART1, a
... transcription factor AL RESISTANCE TRANSCRIPTION FACTOR1 (ART1) revealed that this high Al tolerance in rice is achieved by multiple genes involved in detoxification of Al at different cellular levels. ART1 is a C2H2-type zinc-finger transcription factor and regulates the expression of 31 genes in t ...
... transcription factor AL RESISTANCE TRANSCRIPTION FACTOR1 (ART1) revealed that this high Al tolerance in rice is achieved by multiple genes involved in detoxification of Al at different cellular levels. ART1 is a C2H2-type zinc-finger transcription factor and regulates the expression of 31 genes in t ...
e Study of RNA Polymerase Pausing by Optical Traps
... RNA polymerase (RNAP) is the crucial enzyme responsible for the DNA-directed synthesis of RNA, known as transcription. RNAP’s movement is discontinuous, which can directly affect the expression of any gene in an organism’s genome. This research studies RNAP transcription along two biochemically engi ...
... RNA polymerase (RNAP) is the crucial enzyme responsible for the DNA-directed synthesis of RNA, known as transcription. RNAP’s movement is discontinuous, which can directly affect the expression of any gene in an organism’s genome. This research studies RNAP transcription along two biochemically engi ...
Isolation, cloning and sequence analysis of the lactate
... case was reported from Fars Province, southern Iran (Sharifiyazdi et al. 2012). In this study seven out of eight animals were reported to have died despite single (five cases) and double (two cases) injection of buparvaquone (2.5 mg/kg) as a result of the occurrence of resistance to buparvaquone tre ...
... case was reported from Fars Province, southern Iran (Sharifiyazdi et al. 2012). In this study seven out of eight animals were reported to have died despite single (five cases) and double (two cases) injection of buparvaquone (2.5 mg/kg) as a result of the occurrence of resistance to buparvaquone tre ...
The f ructokinase f rom Rhizobium leguminosarum
... isolated on a 2 4 kb BamHl fragment from the cosmid pLA72 by complementation analysis of the Tn5-induced frk mutant BAL79, and confirmed by hybridization analysis. The nucleotide sequence of the frk gene was found to contain an open reading frame consisting of 978 bp encoding 326 amino acids, which ...
... isolated on a 2 4 kb BamHl fragment from the cosmid pLA72 by complementation analysis of the Tn5-induced frk mutant BAL79, and confirmed by hybridization analysis. The nucleotide sequence of the frk gene was found to contain an open reading frame consisting of 978 bp encoding 326 amino acids, which ...
Current Opinion in Plant Biology
... and membrane proteins involved in attachment to corn seeds. Among these proteins are homologs of a calciumbinding protein, of hemolysin and of a potential multi-drug efflux pump [42]. P. fluorescens genes that are specifically expressed in the rhizosphere (i.e. rhi genes) have been identified using ...
... and membrane proteins involved in attachment to corn seeds. Among these proteins are homologs of a calciumbinding protein, of hemolysin and of a potential multi-drug efflux pump [42]. P. fluorescens genes that are specifically expressed in the rhizosphere (i.e. rhi genes) have been identified using ...
What is similarity and homology? What is a good match? How does
... Differences between nucleotide and protein searches • The databases are often larger (e.g. several complete eukaryote genomes) • The required sensitivity is usually lower (except when looking for ncRNA) • Often we would like to find almost identical matches, allowing only a few mismatches or sma ...
... Differences between nucleotide and protein searches • The databases are often larger (e.g. several complete eukaryote genomes) • The required sensitivity is usually lower (except when looking for ncRNA) • Often we would like to find almost identical matches, allowing only a few mismatches or sma ...
Promoter (genetics)
In genetics, a promoter is a region of DNA that initiates transcription of a particular gene. Promoters are located near the transcription start sites of genes, on the same strand and upstream on the DNA (towards the 5' region of the sense strand).Promoters can be about 100–1000 base pairs long.