DNA Mismatch Repair and Synonymous Codon Evolution in
... Department of Biological Sciences, Rutgers University, Piscataway, New Jersey 08855 1059. Mol. Biol. Evol. 11(1):88-98. 1994. ...
... Department of Biological Sciences, Rutgers University, Piscataway, New Jersey 08855 1059. Mol. Biol. Evol. 11(1):88-98. 1994. ...
here - FasterDB
... Figure 12. Comparison of PTB Binding Sites between Human exon 13 and its orthologous exon in the mouse genome (exon 15) among the WNK gene (A). CLIP-seq data for PTB at the exon level (B). Exon Arrays visualization when PTB is depleted in the Human (C) and Mouse (D). A. For each exon and 200 nucleot ...
... Figure 12. Comparison of PTB Binding Sites between Human exon 13 and its orthologous exon in the mouse genome (exon 15) among the WNK gene (A). CLIP-seq data for PTB at the exon level (B). Exon Arrays visualization when PTB is depleted in the Human (C) and Mouse (D). A. For each exon and 200 nucleot ...
From DNA sequence to application: possibilities and
... elegans. As more genomes are being sequenced, we expect to understand in a much more detailed way than before, how evolution worked in shaping the genomes in present day organisms. Por the first time the genome of a LAB has been sequenced to completion. The sequence of Lactococcus lactis strain lLl4 ...
... elegans. As more genomes are being sequenced, we expect to understand in a much more detailed way than before, how evolution worked in shaping the genomes in present day organisms. Por the first time the genome of a LAB has been sequenced to completion. The sequence of Lactococcus lactis strain lLl4 ...
Isolation and characterization of Viviparous
... Arabidopsis ABI3 gene encodes a transcriptional factor homologous to maize Vp-1 (McCarty et al., 1991; Giraudat et al., 1992) and acts with ABI5 to control embryonic gene expression and seed sensitivity to ABA (Lopez-Molina et al., 2002; Nakashima et al., 2006). Mutants in the Arabidopsis ABI3 gene ...
... Arabidopsis ABI3 gene encodes a transcriptional factor homologous to maize Vp-1 (McCarty et al., 1991; Giraudat et al., 1992) and acts with ABI5 to control embryonic gene expression and seed sensitivity to ABA (Lopez-Molina et al., 2002; Nakashima et al., 2006). Mutants in the Arabidopsis ABI3 gene ...
and Light-Chain Variable-Region Gene Families
... VH genes. The Vl sequences from humans belong to several groups, whereas the sequences from chickens, rabbits, cattle, and sheep are restricted to one Vl group. The two remaining species, mice and horses, show a somewhat unusual pattern. In mice, in contrast to numerous VH genes (see fig. 1), there ...
... VH genes. The Vl sequences from humans belong to several groups, whereas the sequences from chickens, rabbits, cattle, and sheep are restricted to one Vl group. The two remaining species, mice and horses, show a somewhat unusual pattern. In mice, in contrast to numerous VH genes (see fig. 1), there ...
Chromosome Aberrations
... • SINEs are nonautonomous – rely on other TEs (LINEs) for the enzymes required to mobilize ...
... • SINEs are nonautonomous – rely on other TEs (LINEs) for the enzymes required to mobilize ...
draft - IC
... as compositions of the same basic operation, the double-cut-and-join (DCJ). Dierent relative weights for the operations have been considered. Proposals have also diered in the number and type of allowed chromosomes (unichromosomal vs. multichromosomal genomes; linear or circular chromosomes). When ...
... as compositions of the same basic operation, the double-cut-and-join (DCJ). Dierent relative weights for the operations have been considered. Proposals have also diered in the number and type of allowed chromosomes (unichromosomal vs. multichromosomal genomes; linear or circular chromosomes). When ...
Automatically Generating Gene Summaries from Biomedical
... of Illinois (www.beespace.uiuc.edu), we are developing fully automatic annotation methods for model organisms beyond the genetic models, using computational methods. In particular, we are annotating genome data about the honey bee Apis mellifera using new text processing technologies on biomedical l ...
... of Illinois (www.beespace.uiuc.edu), we are developing fully automatic annotation methods for model organisms beyond the genetic models, using computational methods. In particular, we are annotating genome data about the honey bee Apis mellifera using new text processing technologies on biomedical l ...
publication
... a-globin and two b-globin polypeptides with their associated heme groups. This multisubunit protein can bind oxygen cooperatively in the lungs (up to one oxygen per heme molecule) and then deliver the oxygen to other tissues. The ability to bind oxygen reversibly is critical to the physiological fun ...
... a-globin and two b-globin polypeptides with their associated heme groups. This multisubunit protein can bind oxygen cooperatively in the lungs (up to one oxygen per heme molecule) and then deliver the oxygen to other tissues. The ability to bind oxygen reversibly is critical to the physiological fun ...
Autosomal monoallelic expression in the mouse
... variation beyond the phenotypic variation dictated by genotypic variation. Thus, it is important to take into account random monoallelic expression when examining genotype-phenotype correlation. ...
... variation beyond the phenotypic variation dictated by genotypic variation. Thus, it is important to take into account random monoallelic expression when examining genotype-phenotype correlation. ...
Human Heredity - Lyndhurst School
... Duchenne muscular dystrophy is the most common form of the more than thirty kinds of muscular dystrophy. It is caused by a mutation in a gene on the X chromosome that codes for a muscle protein called dystrophin. The mutated gene causes defects in muscle proteins, leading to muscle degeneration. Bec ...
... Duchenne muscular dystrophy is the most common form of the more than thirty kinds of muscular dystrophy. It is caused by a mutation in a gene on the X chromosome that codes for a muscle protein called dystrophin. The mutated gene causes defects in muscle proteins, leading to muscle degeneration. Bec ...
Introduction to Bioinformatics.
... Today the study of such phenomena is possible through the technology of microarray that can measure the expression level of every gene in a cell. With the gene expression data, genes can be clustered on the basis of the similarity of their expression profiles. ...
... Today the study of such phenomena is possible through the technology of microarray that can measure the expression level of every gene in a cell. With the gene expression data, genes can be clustered on the basis of the similarity of their expression profiles. ...
Gene Order Form - life
... base pairs (1000bp) to two thousand base pairs (2000bp), within fifteen (15) business days of receipt of an order. For genes with a sequence length greater than two thousand base pairs (2000bp), Bio Basic Inc. will provide customer with an estimate of the completion date before manufacture of the ge ...
... base pairs (1000bp) to two thousand base pairs (2000bp), within fifteen (15) business days of receipt of an order. For genes with a sequence length greater than two thousand base pairs (2000bp), Bio Basic Inc. will provide customer with an estimate of the completion date before manufacture of the ge ...
MyTaxa: an advanced taxonomic classifier for genomic and
... assembled from metagenomes remains a major bottleneck that affects research across the fields of environmental, clinical and evolutionary microbiology. Here, we introduce MyTaxa, a homology-based bioinformatics framework to classify metagenomic and genomic sequences with unprecedented accuracy. The ...
... assembled from metagenomes remains a major bottleneck that affects research across the fields of environmental, clinical and evolutionary microbiology. Here, we introduce MyTaxa, a homology-based bioinformatics framework to classify metagenomic and genomic sequences with unprecedented accuracy. The ...
Genome sequence of Aspergillus luchuensis
... Historically, A. luchuensis was isolated primarily from awamori koji in the Okinawa islands by Inui in 1901,6 who stated that A. luchuensis is the major fermentation agent in awamori production and that it possesses uniseriate conidial heads. In the same year, Usami also isolated two major kuro koji ...
... Historically, A. luchuensis was isolated primarily from awamori koji in the Okinawa islands by Inui in 1901,6 who stated that A. luchuensis is the major fermentation agent in awamori production and that it possesses uniseriate conidial heads. In the same year, Usami also isolated two major kuro koji ...
Top Ten Ways to Ensure Valid RNAi Data
... contrast, another report indicates that siRNAs can silence non-target genes containing as few as 14–15 consecutive complementary nucleotides [3]. Therefore, until we reach a better understanding of siRNA specificity, it is best to allow for at least 2 nucleotide mismatches between an siRNA and all c ...
... contrast, another report indicates that siRNAs can silence non-target genes containing as few as 14–15 consecutive complementary nucleotides [3]. Therefore, until we reach a better understanding of siRNA specificity, it is best to allow for at least 2 nucleotide mismatches between an siRNA and all c ...
upstream sequence of a differentiation
... In the present work, we have begun to analyze the promoter region of a rabbit K3 keratin (RK3) gene, which we have cloned and sequenced in its entirety. We provide evidence that 300 bp of its 5′-flanking sequence is sufficient to direct the keratinocyte-specific expression of a chloramphenicol acety ...
... In the present work, we have begun to analyze the promoter region of a rabbit K3 keratin (RK3) gene, which we have cloned and sequenced in its entirety. We provide evidence that 300 bp of its 5′-flanking sequence is sufficient to direct the keratinocyte-specific expression of a chloramphenicol acety ...
Genome-wide RNAi Robert Barstead
... genes on C. elegans chromosome III that affect cell division. Ahringer and co-workers [38•] used RNAi to examine the function of about 90% of the genes on C. elegans chromosome I. Their results, described below, are a spectacular validation of the value of genome-wide RNAi screens. The Hyman group s ...
... genes on C. elegans chromosome III that affect cell division. Ahringer and co-workers [38•] used RNAi to examine the function of about 90% of the genes on C. elegans chromosome I. Their results, described below, are a spectacular validation of the value of genome-wide RNAi screens. The Hyman group s ...
Cloning and functional analysis of the chitinase gene promoter in
... Peanut plants are often attacked by pathogens that cause diseases such as mesh spot, leaf spot, black rot, rust, and bacterial wilt. These diseases reduce seed quality and yield; unfortunately, peanut germplasm resources with high resistance to disease are rare (Wang and Zhang, 2013). One solution t ...
... Peanut plants are often attacked by pathogens that cause diseases such as mesh spot, leaf spot, black rot, rust, and bacterial wilt. These diseases reduce seed quality and yield; unfortunately, peanut germplasm resources with high resistance to disease are rare (Wang and Zhang, 2013). One solution t ...
Endogenous Retroviral Elements in Human DNA1
... scription (retroposition) (1). The information generated in this manner includes both sequence elements, which seem to have used cellular mechanisms for passive retroposition, as well as retroelements containing reverse transcriptase- and/or integrase-related sequences possibly initiating their own ...
... scription (retroposition) (1). The information generated in this manner includes both sequence elements, which seem to have used cellular mechanisms for passive retroposition, as well as retroelements containing reverse transcriptase- and/or integrase-related sequences possibly initiating their own ...
Automatically Generating Gene Summaries from Biomedical Literature
... of Illinois (www.beespace.uiuc.edu), we are developing fully automatic annotation methods for model organisms beyond the genetic models, using computational methods. In particular, we are annotating genome data about the honey bee Apis mellifera using new text processing technologies on biomedical l ...
... of Illinois (www.beespace.uiuc.edu), we are developing fully automatic annotation methods for model organisms beyond the genetic models, using computational methods. In particular, we are annotating genome data about the honey bee Apis mellifera using new text processing technologies on biomedical l ...
The bonobo genome compared with the chimpanzee and human
... the human genome is more closely related to the chimpanzee than to the bonobo genome (Fig. 3a). To test this result independently, we analysed transposon integrations, which occur so rarely in ape and human genomes that the chance of two independent insertions of the same type of transposon at the s ...
... the human genome is more closely related to the chimpanzee than to the bonobo genome (Fig. 3a). To test this result independently, we analysed transposon integrations, which occur so rarely in ape and human genomes that the chance of two independent insertions of the same type of transposon at the s ...
Praktikum der Microarray-Datenanalyse
... • if H0 is true, no more than a fraction α of the replications will yield a p-value ≤ α • subject-sampling p-value: replications involve taking a new sample of subjects and measure same genes → a significant p-values gives confidence to find the same associations within a new sample of subjects • ge ...
... • if H0 is true, no more than a fraction α of the replications will yield a p-value ≤ α • subject-sampling p-value: replications involve taking a new sample of subjects and measure same genes → a significant p-values gives confidence to find the same associations within a new sample of subjects • ge ...
Partial Sequence Analysis of the 5S to 18S rRNA Gene Region of
... plant mitochondria, rRNA genes are larger and a 5S RNA is found in mitochondrial ribosomes (6, 15). The 5S and 18S rRNA genes in plant mtDNA are closely linked (3, 10, 12), but both are separate from the 26S rRNA gene (24). In maize, the 26S rRNA gene is separated from the 18S and 5S by 16,000 base ...
... plant mitochondria, rRNA genes are larger and a 5S RNA is found in mitochondrial ribosomes (6, 15). The 5S and 18S rRNA genes in plant mtDNA are closely linked (3, 10, 12), but both are separate from the 26S rRNA gene (24). In maize, the 26S rRNA gene is separated from the 18S and 5S by 16,000 base ...
Drosophila Muller F Elements Maintain a Distinct Set of Genomic
... comparative analyses of the repeat and gene characteristics of the F element in four Drosophila species. The Drosophila 12 Genomes Consortium (Drosophila 12 Genomes Consortium et al. 2007) and the modENCODE project (Kharchenko et al. 2011) have produced a large collection of genomic datasets for D. ...
... comparative analyses of the repeat and gene characteristics of the F element in four Drosophila species. The Drosophila 12 Genomes Consortium (Drosophila 12 Genomes Consortium et al. 2007) and the modENCODE project (Kharchenko et al. 2011) have produced a large collection of genomic datasets for D. ...
Transposable element
A transposable element (TE or transposon) is a DNA sequence that can change its position within the genome, sometimes creating or reversing mutations and altering the cell's genome size. Transposition often results in duplication of the TE. Barbara McClintock's discovery of these jumping genes earned her a Nobel prize in 1983.TEs make up a large fraction of the C-value of eukaryotic cells. There are at least two classes of TEs: class I TEs generally function via reverse transcription, while class II TEs encode the protein transposase, which they require for insertion and excision, and some of these TEs also encode other proteins. It has been shown that TEs are important in genome function and evolution. In Oxytricha, which has a unique genetic system, they play a critical role in development. They are also very useful to researchers as a means to alter DNA inside a living organism.