`Candidatus Midichloria mitochondrii`, an endosymbiont of the tick
... order Rickettsiales, the Holosporaceae (Garrity et al., 2004; but see Lee et al., 2005). All of these bacteria share a common Abbreviation: EM, electron microscopy. The GenBank/EMBL/DDBJ accession number for the gyrB gene sequence of ‘Candidatus Midichloria mitochondrii’ is AM159536. ...
... order Rickettsiales, the Holosporaceae (Garrity et al., 2004; but see Lee et al., 2005). All of these bacteria share a common Abbreviation: EM, electron microscopy. The GenBank/EMBL/DDBJ accession number for the gyrB gene sequence of ‘Candidatus Midichloria mitochondrii’ is AM159536. ...
Human Apolipoprotein A-l-C-lll Gene Complex is Located on
... that they bind and transport lipid in the blood stream. Structurally the apolipoproteins that have been sequenced have all possessed amhipathic alpha-helical regions capable of interacting with aqueous and nonpolar environments.1 In 1977 Barker and Dayhoff30, using amino-acid sequence data available ...
... that they bind and transport lipid in the blood stream. Structurally the apolipoproteins that have been sequenced have all possessed amhipathic alpha-helical regions capable of interacting with aqueous and nonpolar environments.1 In 1977 Barker and Dayhoff30, using amino-acid sequence data available ...
Altering gene expression by aminocoumarins: the role of DNA
... twofold repressed in novobiocin treated bacteria) via light grey (unchanged) to dark orange (at least twofold induced in novobiocin treated cells). Strain HG001 was grown to exponential phase (OD600 = 0.6) and treated with and without novobiocin (0.5 mg/L) for one hour. ...
... twofold repressed in novobiocin treated bacteria) via light grey (unchanged) to dark orange (at least twofold induced in novobiocin treated cells). Strain HG001 was grown to exponential phase (OD600 = 0.6) and treated with and without novobiocin (0.5 mg/L) for one hour. ...
REVIEW ARTICLE Gene cassettes
... An essential feature of gene cassettes is the presence of a recombination site known as a 59-base element that is located downstream of the gene coding region (Hall e t al., 1991). Generally, each gene cassette possesses a unique 59base element, and both the length and sequence of 59-base elements c ...
... An essential feature of gene cassettes is the presence of a recombination site known as a 59-base element that is located downstream of the gene coding region (Hall e t al., 1991). Generally, each gene cassette possesses a unique 59base element, and both the length and sequence of 59-base elements c ...
Retrovirus Integration Database (RID): a public database for
... The NCI Retrovirus Integration Database is a MySql-based relational database created for storing and retrieving comprehensive information about retroviral integration sites, primarily, but not exclusively, HIV-1. The database is accessible to the public for submission or extraction of data originati ...
... The NCI Retrovirus Integration Database is a MySql-based relational database created for storing and retrieving comprehensive information about retroviral integration sites, primarily, but not exclusively, HIV-1. The database is accessible to the public for submission or extraction of data originati ...
Slides on chromosomal changes
... isolation between species. 2) A number of crop plants have undergone such changes and chromosome manipulation may be important in agriculture (breeding). 3) A number of such changes are responsible for human genetic diseases. 4) They may disrupt gene function directly if a break occurs in a gene. 5) ...
... isolation between species. 2) A number of crop plants have undergone such changes and chromosome manipulation may be important in agriculture (breeding). 3) A number of such changes are responsible for human genetic diseases. 4) They may disrupt gene function directly if a break occurs in a gene. 5) ...
Tracking the evolution of 3D gene organization demonstrates its
... (6,7,11) and TF binding sites (8,12). In addition, genes encoding interacting proteins, that form protein complexes and genes along the same pathway have been shown to be co-localized in 3D in human (10). Chromosomes’ 3D conformation has been shown to be related to tissue-specific regulation (13,14) ...
... (6,7,11) and TF binding sites (8,12). In addition, genes encoding interacting proteins, that form protein complexes and genes along the same pathway have been shown to be co-localized in 3D in human (10). Chromosomes’ 3D conformation has been shown to be related to tissue-specific regulation (13,14) ...
Diagnostic Clinical Genome and Exome Sequencing
... hereafter referred to as clinical genome and exome sequencing (CGES), has now entered medical practice.1 Several thousand CGES tests have already been ordered for patients, with the goal of establishing diagnoses for rare, clinically unrecognizable, or puzzling disorders that are suspected to be gen ...
... hereafter referred to as clinical genome and exome sequencing (CGES), has now entered medical practice.1 Several thousand CGES tests have already been ordered for patients, with the goal of establishing diagnoses for rare, clinically unrecognizable, or puzzling disorders that are suspected to be gen ...
S Diagnostic Clinical Genome and Exome Sequencing review article
... hereafter referred to as clinical genome and exome sequencing (CGES), has now entered medical practice.1 Several thousand CGES tests have already been ordered for patients, with the goal of establishing diagnoses for rare, clinically unrecognizable, or puzzling disorders that are suspected to be gen ...
... hereafter referred to as clinical genome and exome sequencing (CGES), has now entered medical practice.1 Several thousand CGES tests have already been ordered for patients, with the goal of establishing diagnoses for rare, clinically unrecognizable, or puzzling disorders that are suspected to be gen ...
Comparative analysis of peanut NBS‐LRR gene clusters suggests
... searched for the presence of other closely related TIR-NBSLRR genes in Medicago. Another region on chromosome 7 (BAC mth2-66o11, GenBank accession no. AC169666) was also found to have three RGAs (Mt7g088460.1, Mt7g088470.1, Mt7g099490.1) that shared high homology to the peanut RGAs. These two region ...
... searched for the presence of other closely related TIR-NBSLRR genes in Medicago. Another region on chromosome 7 (BAC mth2-66o11, GenBank accession no. AC169666) was also found to have three RGAs (Mt7g088460.1, Mt7g088470.1, Mt7g099490.1) that shared high homology to the peanut RGAs. These two region ...
Sequenced Mitochondrial Genomes of Bryophytes
... determined using electron microscopy and restriction endonuclease mapping. The mitochondrial genome of M. polymorpha was found to be a single circular molecule which consists of about 186609 base pairs (bp). Several genes including genes for three species of ribosomal RNA, transfer RNA and 30 open r ...
... determined using electron microscopy and restriction endonuclease mapping. The mitochondrial genome of M. polymorpha was found to be a single circular molecule which consists of about 186609 base pairs (bp). Several genes including genes for three species of ribosomal RNA, transfer RNA and 30 open r ...
Significant enhancement of fatty acid composition in seeds of the
... subgenomes were efficiently targeted by the Cas9/sgRNA complex. To assess whether off-target mutations occurred, three sites in the genome most similar to the target FAD2 site were PCRamplified and sequenced by Sanger chemistry using C. sativa DNA from C. sativa plants with a high mutation rate at t ...
... subgenomes were efficiently targeted by the Cas9/sgRNA complex. To assess whether off-target mutations occurred, three sites in the genome most similar to the target FAD2 site were PCRamplified and sequenced by Sanger chemistry using C. sativa DNA from C. sativa plants with a high mutation rate at t ...
as a PDF
... later stages of spermatogenesis, then one would expect to see fewer X-linked genes with enriched expression in adult males. In particular, this should be true for genes expressed in the male germline and those encoding sperm proteins, which has been observed [12,19]. Male germline X inactivation, ho ...
... later stages of spermatogenesis, then one would expect to see fewer X-linked genes with enriched expression in adult males. In particular, this should be true for genes expressed in the male germline and those encoding sperm proteins, which has been observed [12,19]. Male germline X inactivation, ho ...
LATENT PERIODICITY OF DNA SEQUENCES OF MANY GENES
... The search for regions with latent periodicity was performed in DNA and mRNA clones from the EMBL data bailie The clones with the length less than 1000 bases were not analyzed. An artificial sequence containing 1000 bases was compared with the first 1000 bases of DNA or mRNA clone. Independent varia ...
... The search for regions with latent periodicity was performed in DNA and mRNA clones from the EMBL data bailie The clones with the length less than 1000 bases were not analyzed. An artificial sequence containing 1000 bases was compared with the first 1000 bases of DNA or mRNA clone. Independent varia ...
Chapter 25 RNA Metabolism
... Each gene was found to be a continuous fragment of DNA in the bacterial genome. But Berget and Sharp (1977) observed singlestranded DNA loops when examining adenovirus mRNA-DNA hybrids by electron microscopy. Such single-stranded DNA loops was widely observed when examining such RNA-DNA hybrids. ...
... Each gene was found to be a continuous fragment of DNA in the bacterial genome. But Berget and Sharp (1977) observed singlestranded DNA loops when examining adenovirus mRNA-DNA hybrids by electron microscopy. Such single-stranded DNA loops was widely observed when examining such RNA-DNA hybrids. ...
Using Genetic Algorithms with Asexual Transposition
... recombination and mutation processes. She found that certain genetic elements in corn occasionally move producing kernels with unusual colors that could not have resulted from crossover or mutation. Transposons were for a long time considered as some sort of abnormality, but in 1983, when she was aw ...
... recombination and mutation processes. She found that certain genetic elements in corn occasionally move producing kernels with unusual colors that could not have resulted from crossover or mutation. Transposons were for a long time considered as some sort of abnormality, but in 1983, when she was aw ...
How Does DNA Determine the Traits of an Organism
... How Does DNA Determine the Traits of an Organism? Introduction: In this simulation, you will examine the DNA sequence of a fictitious organism the Snork. Snorks were discovered on the planet Dee Enae in a distant solar system. Snorks only have one chromosome with eight genes on it. Your job is to an ...
... How Does DNA Determine the Traits of an Organism? Introduction: In this simulation, you will examine the DNA sequence of a fictitious organism the Snork. Snorks were discovered on the planet Dee Enae in a distant solar system. Snorks only have one chromosome with eight genes on it. Your job is to an ...
Agrobacterium-mediated DNA transfer, and then some
... with other T-DNAs, vector backbone sequences and Agrobacterium chromosomal DNA. These junction sequences are generally considered Figure 1 Models for various mechanisms to link T-DNA to Agrobacterium chromosomal DNA. In each of these models, the VirD2 endonuclease nicks the T-DNA region or bacterial ...
... with other T-DNAs, vector backbone sequences and Agrobacterium chromosomal DNA. These junction sequences are generally considered Figure 1 Models for various mechanisms to link T-DNA to Agrobacterium chromosomal DNA. In each of these models, the VirD2 endonuclease nicks the T-DNA region or bacterial ...
Evolutionary interactions between sex chromosomes and autosomes
... genes was developed (Betran et al. 2002). Because there was only one fruit fly assembly available, the team decided to focus on the paralogous comparisons for identifying new genes created from RNA-based duplication, e.g. retroposition (Brosius 1993), in which a parental gene transcribes, processes ...
... genes was developed (Betran et al. 2002). Because there was only one fruit fly assembly available, the team decided to focus on the paralogous comparisons for identifying new genes created from RNA-based duplication, e.g. retroposition (Brosius 1993), in which a parental gene transcribes, processes ...
Antisense derivatives of U7 small nuclear RNA as
... To be effective, splicing-modulating antisense RNAs must accumulate in the nucleoplasm where splicing occurs (see chapter 42 Aartsma Rus). This is why derivatives of U small nuclear RNAs (snRNAs), and in particular of U7 snRNA, have been widely used for this purpose [1]. Apart from the advantage tha ...
... To be effective, splicing-modulating antisense RNAs must accumulate in the nucleoplasm where splicing occurs (see chapter 42 Aartsma Rus). This is why derivatives of U small nuclear RNAs (snRNAs), and in particular of U7 snRNA, have been widely used for this purpose [1]. Apart from the advantage tha ...
PDF
... ZicL as gene clusters and their precise copy numbers have not yet been determined, these genes are collectively referred to FoxD, Tbx6b and ZicL in this paper. Likewise, there are two copies of Twist-like1, which are highly similar to each other, and we collectively refer to these as Twist-like1. We ...
... ZicL as gene clusters and their precise copy numbers have not yet been determined, these genes are collectively referred to FoxD, Tbx6b and ZicL in this paper. Likewise, there are two copies of Twist-like1, which are highly similar to each other, and we collectively refer to these as Twist-like1. We ...
Transposable element
A transposable element (TE or transposon) is a DNA sequence that can change its position within the genome, sometimes creating or reversing mutations and altering the cell's genome size. Transposition often results in duplication of the TE. Barbara McClintock's discovery of these jumping genes earned her a Nobel prize in 1983.TEs make up a large fraction of the C-value of eukaryotic cells. There are at least two classes of TEs: class I TEs generally function via reverse transcription, while class II TEs encode the protein transposase, which they require for insertion and excision, and some of these TEs also encode other proteins. It has been shown that TEs are important in genome function and evolution. In Oxytricha, which has a unique genetic system, they play a critical role in development. They are also very useful to researchers as a means to alter DNA inside a living organism.