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Discussion DISCUSSION Antimicrobial resistance among bacterial pathogens is a global problem, but in Egypt data are sparse. This study reviewed the antimicrobial susceptibility patterns of nosocomial isolates of gram positive cocci and gram-negative bacilli in Benha University Hospitals, Egypt, from 2009 to 2010. Although data stratified by hospitals are not presented in details, resistance among gram-positive cocci and gram negative bacilli was widespread. The isolated bacteria in Benha hospitals, in this study were Klebsiellae spp. (28.9%), E.Coli (18.7%) , Staphylococcus aureus (15.4%), CONS (11.3%) , Enterococcus spp. (4.8%) , proteus spp. (4.5%), Enterobacter spp. (4.2%), Pseudomonas spp. (3.7%) Acinetobacter spp. (1.2%) , on the other hand and Yen Tan et al .,(2008) found in the fourth quarter of 2007 that the isolated bacteria in Singapore hospitals were E.Coli (22%), Staphylococcus aureus (16%), Klebsiellae spp. (12%) , Pseudomonas aeruginosa (9%), Enterococcus spp .(5%) and Acinetobacter spp. (3%). We observed a high rate of Klebsiellae infection (45.2%) in neonatal ICU, followed by E.Coli (14.6%), Staphylococcus aureus (13.4%) and CONS (9.7%). This was against the results of Monsef and Eghbalian, (2010) were they found that the most common microorganisms were E.Coli (66.7%), Klebsiellae spp. (10.5%), followed by CONS and Staphylococcus aureus, also the results of Yalaz et al., (2006) in which the isolated bacteria were CONS (31.3%), Staphylococcus aureus (13%) ,and Klebsiella Pneumoniae (10.5%) in descending order. 147 Discussion Klebsiellae and CONS were the most frequently isolated pathogens from blood each representing (69.4%) and (38.7%) respectively, El Kholy et al., (2003) found that Enterobacter spp. and CONS were the frequently isolated pathogens from blood cultures. The development of a nosocomial infection is a chain of events, which is influenced by the microbe, transmission route, and the patient himself (Gaynes and Horan, 2005). The organisms causing most nosocomial infections usually come from the patient's own body (endogenous flora). They also can come from contact with staff (cross-contamination), contaminated instruments and needles, and the environment (exogenous flora) (Garner et al., 1996). In our study we collected (205) nosocomial samples, (74) were tested by sensititer, of which (54) were gram negative and (20) were gram positive. They were collected from ICU, surgery, dialysis and internal medicine units. Different samples were collected from blood, respiratory tract, urinary tract, surgical wounds and deep pus in descending order of frequency. Hospital-acquired infections are most commonly associated with invasive medical devices or surgical procedures. In the present study bloodstream infections and lower respiratory tract were the most lethal, and this was consistent with the results of Peleg and Hooper, (2010). However in their study they reported that urinary tract infections were the most common, but blood stream infections were the most common in our study. A range of gram-negative organisms are responsible for hospitalacquired infections, the Enterobacteriaceae family being the most 148 Discussion commonly identified group overall. Unfortunately, multidrug-resistant organisms, including baumannii, and Pseudomonas aeruginosa, Acinetobacter ESBL–producing or carbapenemase-producing Enterobacteriaceae, are increasingly being reported worldwide (Peleg and Hooper, 2010). In the present study gram negative bacteria were responsible for about (26.4%) of hospital acquired infections, and these bacteria predominate in septicemia (51.8%) and ventilator-associated pneumonia (25.9%). Recent data from the U.S. National Healthcare Safety Network indicate that gram-negative bacteria were responsible for more than 30% of hospital-acquired infections and these bacteria predominate in cases of ventilator-associated pneumonia (47%) and urinary tract infections (45%) (Hidron et al., 2008). In ICUs in the United States, gram-negative bacteria account for about 70% of these types of infections and similar data were reported from other parts of the world (Gaynes and Edwards , 2005).The present study augmented these data, as we found that the rate of gram-negative bacterial infections in ICUs were (76.3%). In the present study (62.3%) of hospital-acquired bloodstream infections in ICUs were due to gram-negative organisms, while it was approximately (30%) in the United States (Gaynes and Edwards, 2005).Although this proportion was lower when hospital-wide data were examined in the study of Hidron et al.,(2008). This may be explained by the fact that we collected a small number of nosocomial isolates relative to the number collected in the previous studies. 149 Discussion Regarding the organisms recovered in our study, all the (18) klebsiellae spp. isolates from blood (14 Klebsiella pneumonia, 1 Klebsiella oxytoca and 3 klebsiella group 47) were (100%) resistant to third generations cephalosporins. Among Klebsiella pneumonia 57.2% were imipenem resistant, while Two 3 klebsiella group 47 strains were resistant to both out of 71.4% were meropenam resistant. carbapenems. On the other hand of bloodstream isolates of Klebsiella pneumoniae from hospitals throughout the United States, 27.1% from 483 isolates tested were resistant to third-generation cephalosporins and 10.8% from 452 isolates tested were resistant to carbapenems (Hidron et al., 2008). Higher rates of resistance were reported from parts of Europe (Souli et al., 2008). In our study 7 out of 14 Klebsiella pneumoniae strains and 2 klebsiella group 47 strains that were resistant to all currently available antibiotics included in our sensititer panel ,but not including polymyxins, were recovered from neonatal ICU. The most recent challenge has been the spread of carbapenemase-producing Enterobacteriaceae. The βlactamase responsible for this phenotype, known as Klebsiella pneumoniae carbapenemase, or KPC, confers reduced susceptibility to all cephalosporins (including cefepime), monobactams (aztreonam), and the carbapenems (Nordmann Enterobacteriaceae et al., 2009). Carbapenemase-producing have now been identified in hospitals in at least 20 states in the United States, as well as in other parts of the world, including South America, Israel, China, and, less commonly, Europe (Nordmann et al., 2009). The genetic relatedness of the strains responsible for outbreaks 150 Discussion within and between countries highlights the importance of strict infection control to prevent ongoing dissemination (Navon-Venezia et al., 2009). These β-lactamases are encoded on mobile genetic elements, mostly plasmids and transposons, which probably explain their spread among gram-negative genera. Thus leaving the physician with few therapeutic options. Klebsiella pneumoniae strains that were resistant to all currently available antibiotics, including the polymyxins, had been reported (Souli et al.,2008). Also of greatest concern were reports of infections caused by organisms that were resistant to all currently available antibiotics, including the polymyxins (Valencia et al., 2009). Hospital-acquired pneumonia is the most common life-threatening hospital-acquired infection, and the majority of cases are associated with mechanical ventilation. Ventilator-associated pneumonia occurs in approximately 10 to 20% of patients who are on ventilators for longer than 48 hours and is associated with significant increases in length of hospital stay, mortality, and costs (Jarvis, 2007). Regarding our study, gram-negative organisms predominate in hospital-acquired pneumonia, particularly Klebsiellae spp., Enterobacter spp., Pseudomonase aeruginosa, and Acinetobacter baumannii in descending order of frequency. On the contrary in the study of Gaynes and Edwards, (2005), gram-negative organisms that predominate in hospital-acquired pneumonia were Pseudomonase aeruginosa, Acinetobacter baumannii, and then Enterobacteriaceae. In a recent survey in Europe, 26.4% aeruginosa isolates and 36.8% of of 679 Pseudomonase 427 Acinetobacter baumannii isolates that caused ventilator-associated pneumonia were resistant to 151 Discussion carbapenems (imipenem or meropenem) (Hidron et al., 2008). Similar data had been reported from other parts of the world, with countries such as Greece reporting rates of carbapenem resistance of up to 85% among ICU isolates (Souli et al.,2008). In our study one Acinetobacter baumannii strain was recovered from a case of ventilator-associated pneumonia in surgery unit and was resistant to meropenem but sensitive to imipenem. Another one strain of Pseudomonase aeruginosa was recovered from sputum of ventilated patient in adult ICU and was resistant to the whole panel of sensititer antibiotics , one Klebsiella Oxytoca , one Raoultella terrigena and two Klebsiella Pneumoniae were recovered from sputum samples in ICU and were resistant to meropenem but sensitive to imipenem. Compounding the problem of antimicrobial-drug resistance is the immediate threat of a reduction in the discovery and development of new antibiotics (Boucher et al., 2009). Several factors have contributed to this decline, including the increasing challenges of screening for new compounds, the high capital costs and long time required for drug development, the growing complexity of designing and performing definitive clinical trials, and the concern about reduced drug longevity due to the emergence of resistance. As a consequence, a perfect storm has been created with regard to these infections; increasing drug resistance in the absence of new drug development (Peleg and Hooper, 2010). The highest rates of nosocomial gram positive bacterial infections were observed in ICUs in our hospital, which were also the units in which the most severely ill patients were treated and the highest 152 Discussion mortality rates were observed. Similar findings were found in other studies (Laupland et al., 2002). We observed that the incidence of nosocomial MRSA among collected Staphylococcus aureus was 24.4% in contrast to the results of Albertini et al .,(2002) which showed higher rate .The results of Randrianirina et al.,(2010) were much lower than in most countries. The prevalence of MRSA varies greatly throughout the world, as a function of site of infection and whether the infection is nosocomial or community-based. All our MRSA isolates were vancomycin , linezolid and quinuprisitin / dalfopristin susceptible , but only 80% were daptomycin susceptible .On the other hand surveillance of nosocomial infections at a Saudi Arabian military hospital for a one-year period found that MRSA were 98.5% vancomycin susceptible and all CONS were vancomycin susceptible (Abdel-Fattah , 2005 ). In the present study we recorded 3 cases of MRCONs strains which were also vancomycin and linezolid resistance .These VRCONS strains were recovered from blood cultures in neonatal ICU in low birth weight immunosuppresed neonates receiving vancomycin for approximately one month. Vancomycin-resistant enterococcus can cause serious infections in vulnerable, immunocompromised patients. Multiple studies have shown that VRE spreads mainly via contaminated hands, cloths and portable equipment carried by healthcare workers (Chlebicki and Kurup, 2008). We isolated 3 VRE strains (two enterococcus faecium and one enterococcum fecalis) from blood cultures in adult ICU patients, on the 153 Discussion contrary Abdel-Fattah, (2005) did not observe resistance to vancomycin among isolated enterococci. As pointed out in an extensive review by Safdar and Maki, (2002) there is a remarkable commonality of risk factors for infection and colonisation with several nosocomial pathogens such as VRE, MRSA, and ESBL producing gram-negative bacteria. Antibiotic exposure has been consistently identified as a risk factor for VRE positivity. It facilitates VRE transmission by 2 mechanisms: It suppresses normal competing bowel flora providing selective advantage for VRE and it increases concentration of VRE in stool of previously colonized patients rendering them more contagious (Donskey et al .,2000). VRE colonization has been associated with multiple classes of antibiotics including glycopeptides, second and third generation of cephalosporins and other antibiotics with prominent anti-anaerobic activity (Donskey et al., 2000). The results from our study provide a snapshot of the antibiotic resistance profile of prevalent nosocomial gram-negative bacilli and gram positive cocci in Benha University Hospitals as it comprehensively examined the antibiotic susceptibilities of these isolates. In our work a standardized dilution method was used for testing isolates and antibiotic susceptibilities (MIC) were interpreted using a common standard. This method allows standardization of results across institutions that use different susceptibility testing methods (e.g. disc 154 Discussion diffusion, semiautomated testing systems*sensititer*) and CLSI breakpoints for determining susceptibility. All our Enterobacteriaceae isolates were resistant to extendedspectrum cephalosporins as a consequence of production and/or carbapenemase ESBL and/or AmpC production. The phenotypic methods used in our study are unable to differentiate between chromosomally and plasmid-borne AmpC genes. The presence of these resistance mechanisms was also associated with coresistance to other classes of antibiotics, including the very commonly prescribed ciprofloxacin, for which only 3 of every 10 nosocomial gram negative isolates remain susceptible. This high level of ciprofloxacin resistance rules out the use of ciprofloxacin as empirical treatment when invasive infections due to these pathogens are suspected. Our results demonstrated that, in general, isolates have high rates of resistance to antibiotics commonly used in developing countries. We also found a high rate of resistance to penicillins, B lactam/B lactamase inhibitor combinations, first and second generation cephalosporins and trimethoprim/ sulphamethoxazole.Therefore , cheap antibiotics such as amoxicillin, tetracyclin and trimethoprim/ sulphamethoxazole are now of limited benefit in the treatment of infections. These results were probably due to overuse and misuse of broad-spectrum antibiotics (Randrianirina et al., 2010) Although our limited sample size, uncommon forms of resistance were detected among uncommon pathogens that is difficult, if possible, to be identified by conventional methods without the use of automation. For example, the isolation of Raoultella terrigena strain from our sputum was resistant to all currently available samples. It 155 one of Discussion antibiotics but only sensitive to imipenem. The name Raoultella is proposed as a genus name for species of klebsiellae of cluster II. The genus Klebsiellae is heterogeneous and composed of species which form three clusters that also included members of other genera, including Enterobacter aerogenes, Erwinia clusters I and II and Cluster I contained the type strains Tatumella. of Klebsiella pneumoniae subsp. Pneumonia, Klebsiella pneumoniae subsp. Rhinoscleromatis and Klebsiella pneumoniae subsp. ozaenae. Cluster II contained Klebsiella ornithinolytica , Klebsiella planticola , Klebsiella trevisanii and Klebsiella terrigena. Cluster III contained Klebsiella oxytoca (Drancourt et al., 2001) .It was identified as an ESBL producer and this was consistant with the results of Peterson et al., (2008) who documented the appearance of multiresistant strains among clinical Klebsiellae isolates , especially those producing ESBLs , which show resistance to extended-spectrum cephalosporins , and their rates were increasing over the past several years. Also we identified 3 strains of Klebsiella group 47, isolated from blood cultures of neonatal ICU cases. One was identified as an only ESBL producer, and the other 2 strains were resistant to the whole panel of sensititer antibiogram including imipenem and meropenem and both were identified as positive MBL producers using our imipenem-EDTA combined discs test. Klebsiella group 47 represents a single new species in the genus Klebsiellae for which the name Klebsiella ornithinolytica is proposed (Sakazaki et al., 1989). Now it is considered as a species of klebsiellae of cluster II (Drancourt et al.,2001). We isolated a strain of Aeromonas hydrophila subsp. hydrophila from post operative brain abscess pus after removal of a benign tumour in surgery unit. It was highly resistant to the whole panel of sensititer 156 Discussion antibiogram including imipenem and meropenem and was identified as ESBL producer in our ESBL and AmpC detection kit. In an analysis of drug resistance of pathogenetic aeromonase done by Zhao-wei and his colleagues, (2008) they demonstrated that 4.4% were multidrug resistant. Warren and his colleagues, (2000) isolated a member of the Enterobacteriaceae identified as Kluyvera cryocrescens by the MicroScan Gram-Negative Combo 13 panel caused an outbreak of nosocomial infections in four patients (2 pneumonia, 1 urinary tract infection and 1 wound infection) and urinary tract colonization in one patient . The antibiotic susceptibility testing revealed the presence of ESBL resistance. They concluded that Kluyvera cryocrescens appears to be a new opportunistic pathogen that can serve as a source of ESBL resistance in the hospital. The same finding was found in our study as we recovered a strain of ESBL producer Kluyvera cryocrescens from hysterectomy wound infection. It was resistant to the whole panel of sensititer antibiogram including meropenem but the strain was only sensitive to imipenem. Nosocomial infections are a major challenge to patient safety. It is estimated that in 2002, a total of 1.7 million hospital-acquired infections occurred (4.5 per 100 admissions), and almost 99,000 deaths resulted from or were associated with a hospital-acquired infection , making hospital-acquired infections the sixth leading cause of death in the United States ; similar data have been reported from Europe. The estimated costs to the U.S. health care budget are $5 billion to $10 billion annually. Approximately one third or more of hospital-acquired infections are preventable (Peleg and Hooper, 2010). 157