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DNA www.nerdscience.com What is DNA? Polymer made of nucleotides Nucleotides are made of: a simple sugar (deoxyribose sugar) a phosphate group a nitrogen base It contains the code to make proteins! Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. 12-1 DNA (deoxyribonucleic acid) Found in nucleus Coils to form chromosomes Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Covalent bonds hold sugar and phosphate groups together Hydrogen bonds hold nitrogen bases together Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. The Four Nitrogen Bases are Adenine (A) Thymine (T) Guanine (G) Cytosine (C) Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. 12-1 Nitrogen Base Pairs Adenine pairs with thymine. A bonds to T T bonds to A Guanine pairs with cytosine. C bonds to G G bonds to C Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Hydrogen bonds weak bonds hold nitrogen bases together bonds A -T and G - C Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Watson and Crick 1950’s Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. 12-1 Watson and Crick Discovered the structure of DNA DNA is double stranded Forms double helix spiral ladder Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. The Genetic Code Watson and Crick (not in template) They discovered that : A bonds to T C bonds to G Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. 12-1 Order of the nitrogen base pairs (A,T,G,C) determines the traits of the individual. Order of the nitrogen base pairs is the genetic code. Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Replication of DNA Process of copying DNA Takes place in nucleus Happens before cells divide by mitosis or meiosis Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. DNA Replication Allows daughter cells formed from mitosis to be identical to parent cell. Allows four sex cells with ½ the genetic material (1/2 the number of chromosomes) to be formed in meiosis Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. How DNA Replicates Hydrogen bonds break DNA molecule unzips between nitrogen base pairs (A-T or T-A and C-G or G-C) Nucleotides (Nitrogen base, sugar, and phosphate groups) move from cytoplasm into nucleus Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Replication of DNA Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. How DNA Replicates (cont’d) Nucleotides moving into nucleus bond with original strands of separated DNA Two strands of DNA are formed Each double stranded DNA molecule has one strand of old and one strand of new DNA (semi-conservative process). Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Protein Synthesis Transcription Translation Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Introduction to Genes, Protein, and DNA Protein Synthesis Proteins are made in cytoplasm of cell on ribosome (enzymes are proteins) RNA has important role in protein synthesis RNA (ribonucleic acid) ribose sugar phosphate nitrogen bases (A, U, G, C) Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Three types of RNA 1. mRNA (messenger RNA) Single stranded Contains uracil instead of thymine Acts as a messenger for DNA Carries genetic code from nucleus into cytoplasm to the ribosome Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. 2. mRNA binds with ribosomes (rRNA) to produce proteins 3. tRNA (transfer RNA) carry amino acids in cytoplasm to the ribosome to make proteins Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Transcription Produces one single-stranded mRNA Adenine bonds with Uracil (not Thymine) Happens in nucleus Hydrogen bonds break between nitrogen bases of DNA DNA molecule unzips RNA nucleotides pair with nitrogen bases on one side of the DNA Single strand of mRNA is formed Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Transcription Single stranded mRNA is made from DNA Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. DNA strand RNA strand RNA strand DNA strand Transcription Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. After transcription, the mRNA travels out of nucleus into cytoplasm to a ribosome. At the ribosome translation begins and proteins are made. Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Transcription Translation Genetic code carried on mRNA is translated at the ribosome into amino acids that make up proteins mRNA binds to ribosome Ribosome reads three letter codon (set of three nitrogen bases) on mRNA Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. tRNA (transfer RNA) carry amino acids to ribosome based on the mRNA codons Amino acids are joined by peptide bonds to form polypeptide chains (proteins) Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Translation and the Genetic Code Order of nitrogen bases carried from nucleus to cytoplasm on mRNA determines amino acid sequence and protein Codon - three nucleotides code for one amino acid mRNA strand Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Ribosome mRNA codon Translation Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Translation Translation Process of making a protein (a long chain of amino acids) based on the codons on the mRNA Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Codons on mRNA for the 20 different amino acids shared by all living things www.nerdscience.com 12-3 Genetic Engineering Selective Breeding Recombinant DNA Transgenic organisms Cloning Human Genome Project Gene therapy DNA fingerprints Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Selective Breeding Carefully selecting which plants and animals to breed to get desired traits in offspring Inbreeding Crossing similar organisms Crossing different organisms Hybridization Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Concept Map Selective Breeding consists of Inbreeding Hybridization which crosses which crosses Similar organisms Dissimilar organisms for example for example Organism breed A Organism breed B Organism breed A which which Retains desired characteristics Combines desired characteristics Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Nerdscience.com 13-1 Spots from lion, stripes from tiger Likes to swim like tiger Roars like lion and also can make tiger sounds Liger – Cross between a male lion and a female tiger Genetic Modifications in History of Agriculture Recombinant DNA Contains DNA from a different organism Made by inserting genes from one organism into the DNA of another organism (gene splicing) Transferred or new gene becomes part of the receiving organism’s DNA and is passed on Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Making Recombinant DNA The plasmid (ring shaped DNA) is taken out of E. coli bacteria The E. coli plasmid (ring shaped DNA) is cut with restriction enzymes. Human gene for making insulin is put in the E. coli DNA Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Inserting gene sequences into DNA Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Recombinant DNA (E. coli and human insulin genes) are put back in bacteria E. coli now produces human insulin for control of diabetes. As E. coli bacteria reproduce asexually by binary fission, the human DNA is copied and passed on to the new bacteria. Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Advances in Plant Genetics Genetically Engineered Soybeans Before spray with herbicide After spray with herbicide Bt genes Bt is a gene found in Bacillus thuringiensis (a bacteria found in the soil) that kills insects European corn borer Bollworm Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Bt gene is transferred into corn and cotton plants to protect them from pests Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Cotton without Bt gene Cotton with Bt gene Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Advantages of Genetically Modified Food Recombinant DNA techniques have increased enzyme activity and improved the production of: Cheese laundry detergents pulp and paper production sewage treatment Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Other products of recombinant DNA Human growth hormone Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Other products of recombinant DNA Interferon, used to fight viruses Vaccines Phenylalanine: aspartame (artificial sweetener) Bacteria that break down pollutants and oil Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Recombinant DNA technology is used a lot in the agricultural and food industries to produce transgenic organisms. Crops have been developed that are better tasting, stay fresh longer, and are protected from disease and insects. Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Cloning Clones are produced asexually Clones have identical genes (DNA) Genes can be cloned (recombinant DNA) Organisms can be cloned Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Cloned calves ANDi The first genetically modified rhesus monkey Copy cat(Cc) First cloned cat Rainbow, Cc’s “mom” and Cc with her surrogate mother Human Genome Project The Human Genome Project, an international effort, has sequenced the chromosomal DNA of the human genome. Efforts are underway to determine the location for every gene. Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Human Genome Project Applications Improved techniques for Diagnosis of genetic disorders prenatal diagnosis of human disorders use of gene therapy development of new methods of crime detection Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Gene Therapy insert normal genes into human cells to correct genetic disorders Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Gene Therapy Cell culture flask Add virus with functioning SCID gene Bone marrow cells Gene Hip Bone Bone marrow cell with integrated gene Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. DNA Fingerprinting Must have a sample of DNA from cellular material (tissue) Unique to people like fingerprints are Not made from human fingerprints Human fingerprints are left from sweat Fingerprints from fingers do not have DNA Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. DNA Fingerprinting Made from gel electrophoresis Separates DNA pieces based on size Smaller pieces (fragments) travel down the gel farther and faster than longer, larger pieces. DNA patterns from gel electrophoresis used to identify people Used to test paternity and identify crime suspects Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. The Gel With a consistency that is firmer than dessert gelatin, the gel is molded so that small wells form at one end. Gel Small amounts of the fragmented DNA are placed into these wells. Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. An electric field The gel is placed in a solution and an electric field is applied making one end of the gel positive and the other end negative. Positive Power source Negative end end Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. The fragments move The negatively charged DNA fragments travel toward the positive end. Completed gel Longer fragments Shorter fragments Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Gel Electrophoresis http://www.teachersdomain.org/68/sci/life/stru/creatednafingerprint/ Identification of Crime Scene Suspects Paternity Identification (ID Parents) Half of the soldier’s DNA matches parent C and the other half matches parent D. INTERACTIVE ROLE OF GENETICS AND THE ENVIRONMENT Sickle Cell Anemia Inherited disease that affects the hemoglobin on the RBC (red blood cell) by changing shape from round to sickle Normal cell Sickle cell Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Sickle Shaped RBCs Decrease amount of oxygen hemoglobin (a protein) can carry Less oxygen to the cells causes fatigue (feeling tired) Cause clots Higher altitudes have less oxygen so normal cells become sickle shaped Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Malaria Caused by a mosquito bite (vector) that is infected by small parasite, Plasmodium Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Malaria symptoms anemia (low red blood cell count) Fever Shivering joint pain vomiting Malaria treatment Can be treated with the correct drugs Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Malaria Cancers Mouth and lung cancer caused by tobacco use Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Skin Cancer Caused by UV radiation in sunlight Some UV radiation is important because Vitamin D is produced in skin when exposed to UV rays in sunlight Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Diet and Nutrition 1. PKU Genetic disorder involving the absence of an enzyme (protein) which breaks down the amino acid phenylalanine Build up of this amino acid causes severe damage to the central nervous system including mental retardation Can be controlled by diet. People with PKU cannot eat anything with phenylalanine (most diet foods) Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Phenylketonuria Phenylketonurics: Contains Phenylalanine 2. Diabetes Genetic disorder involving problems with the production of insulin which helps the body to use sugar (glucose) Treatment Diet – limit amount of carbohydrates (sugar) Insulin – produced by recombinant DNA Exercise – body “burns” excess glucose Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. 3. Poor nutrition Lack of nutrients which are needed by the body Obesity (eating too much food) Malnutrition (not eating the right foods or not enough food) Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Other Environmental Toxins Mercury and lead Bioaccumulate in food chain due to biomagnification Affect organisms higher in the food chain Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Mutation Result of change in genetic code or sequence of nucleotides Can lead to a change in proteins DNA does not replicate correctly or chromosomes do not pair correctly Caused by mutagens (drugs, chemicals, radiation) Causes genetic variation Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. The effects of point mutations mRNA Normal Protein Stop Replace G with A mRNA Point mutation Protein Stop Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Frameshift mutations Deletion of U Frameshift mutation mRNA Protein Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Types of Mutations Enzymes proofread DNA and replace incorrect nucleotides with correct nucleotides The greater exposure to mutagens, the greater chance mutations will occur Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall. Bibliography Miller, K. R., & Levine, J. S. (2005). Chapter 12: DNA and RNA. Prentice Hall biology (North Carolina ed., pp. 286- 317). Upper Saddle River, N.J.: Prentice Hall. Miller, K. R., & Levine, J. S. (2005). Chapter 13: Genetic Engineering. Prentice Hall biology (North Carolina ed., pp. 318- 338). Upper Saddle River, N.J.: Prentice Hall. Miller, K. R., & Levine, J. S. (2005). Chapter 14: The Human Genome. Prentice Hall biology (North Carolina ed., pp. 340- 364). Upper Saddle River, N.J.: Prentice Hall.