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General enquiries on this form should be made to: Defra, Procurements and Contracts Division (Science R&D Team) Telephone No. 0207 238 5734 E-mail: [email protected] SID 5 Research Project Final Report Note In line with the Freedom of Information Act 2000, Defra aims to place the results of its completed research projects in the public domain wherever possible. The SID 5 (Research Project Final Report) is designed to capture the information on the results and outputs of Defra-funded research in a format that is easily publishable through the Defra website. A SID 5 must be completed for all projects. 1. Defra Project code 2. Project title This form is in Word format and the boxes may be expanded or reduced, as appropriate. 3. ACCESS TO INFORMATION The information collected on this form will be stored electronically and may be sent to any part of Defra, or to individual researchers or organisations outside Defra for the purposes of reviewing the project. Defra may also disclose the information to any outside organisation acting as an agent authorised by Defra to process final research reports on its behalf. Defra intends to publish this form on its website, unless there are strong reasons not to, which fully comply with exemptions under the Environmental Information Regulations or the Freedom of Information Act 2000. Defra may be required to release information, including personal data and commercial information, on request under the Environmental Information Regulations or the Freedom of Information Act 2000. However, Defra will not permit any unwarranted breach of confidentiality or act in contravention of its obligations under the Data Protection Act 1998. Defra or its appointed agents may use the name, address or other details on your form to contact you in connection with occasional customer research aimed at improving the processes through which Defra works with its contractors. SID 5 (Rev. 05/09) Project identification SE4006 Classical Swine Fever Virus survival in meat products and diagnostic samples Contractor organisation(s) Veterinary Laboratories Agency Woodham Lane New Haw Surrey KT15 3NB 54. Total Defra project costs (agreed fixed price) 5. Project: Page 1 of 14 £ 234,062 start date ................ 01 June 2005 end date ................. 31/03/2010 6. It is Defra’s intention to publish this form. Please confirm your agreement to do so. ................................................................................... YES NO (a) When preparing SID 5s contractors should bear in mind that Defra intends that they be made public. They should be written in a clear and concise manner and represent a full account of the research project which someone not closely associated with the project can follow. Defra recognises that in a small minority of cases there may be information, such as intellectual property or commercially confidential data, used in or generated by the research project, which should not be disclosed. In these cases, such information should be detailed in a separate annex (not to be published) so that the SID 5 can be placed in the public domain. Where it is impossible to complete the Final Report without including references to any sensitive or confidential data, the information should be included and section (b) completed. NB: only in exceptional circumstances will Defra expect contractors to give a "No" answer. In all cases, reasons for withholding information must be fully in line with exemptions under the Environmental Information Regulations or the Freedom of Information Act 2000. (b) If you have answered NO, please explain why the Final report should not be released into public domain Executive Summary 7. The executive summary must not exceed 2 sides in total of A4 and should be understandable to the intelligent non-scientist. It should cover the main objectives, methods and findings of the research, together with any other significant events and options for new work. Classical swine fever virus (CSFV) is a highly infectious disease of pigs that has important economic and social implications for the pig production industry. Minimising losses caused by such diseases will become increasingly important to ensure future food security. Identifying the importance that different factors have on the likelihood of the introduction or spread of this exotic disease is important to allow proportionate strategies, which mitigate the risk of disease introduction without imposing undue restrictions, to be defined. The objective of this project was to provide data that will help to reduce the level of uncertainty associated with future assessments of the risks that products of porcine origin pose for introduction of disease. Specifically we made use of CSFV infected material, generated as part of a parallel project investigating CSFV vaccination, to provide additional information on the levels of virus that are likely to be present in meat and other tissues from CSFV infected animals. We have also investigated the effect of temperate on how long CSFV survives. Generation of data on the rate that the virus becomes inactivated in culture medium at various key temperatures has allowed calculation of the temperature increase that is needed to reduce the viral concentration by one log within the same time (this value is termed the Z value). For the virus strain studied this value is 10C in tissue culture medium. This data can be use to estimate how long virus may survive at temperatures other than those tested. This tissue culture medium data can be used as a baseline to inform on the likely stability of the virus in other matrices, but further investigation of the stability of the virus in meat tissues and products of porcine origin is still required. We have also investigated the survival of the virus in serum samples incubated at 56C. Treatment of samples at this temperature for 30 minutes is often used to “inactivate” viruses prior to processing of serum samples outside of biosecure containment laboratories, for example for ELISA testing. Our data indicate that treatment of CSFV positive sera for this length of time will only reduce the viral concentration by around one log. Treatment of sera for longer periods at 56C impacted on the efficacy of a CSFV antibody ELISA, indicating that procedures for handling CSFV infected, or potentially CSFV infected, material should take into consideration both disease security and test efficacy issues. In the event of a future outbreak of CSFV, emergency vaccination with live attenuated CSFV vaccines could be considered to assist in reducing spread of the disease. One strategy could be a “vaccinate to kill” or suppressive strategy where animals surrounding an infected premise are vaccinated with a live attenuated vaccine to reduce the potential for the virus to spread. Current live attenuated vaccines do not allow the identification of animals that are also infected by serological tests and so, in such a strategy, the SID 5 (Rev. 05/09) Page 2 of 14 vaccinated animals would be slaughtered to prevent them harbouring field virus undetected. It is uncertain what risk the meat from such vaccinated animals would pose if it were to enter domestic food processes. To address this issue we investigated how much challenge virus, as opposed to vaccine virus, is present in certain tissues of animals that have been vaccinated but subsequently exposed to challenge virus prior to the onset of full protective immunity. Challenge virus could be detected in the tonsils and lymph nodes of some animals that were partially protected by the vaccination and thus would be difficult to identify, as they would have fewer clinical signs. Further investigation of the level of challenge virus in muscle and other tissues that are more likely to be present in meat and pork from these animals will be beneficial to help estimate how much of a risk the meat from such animal pose. A major factor that determines how much of a risk a potentially infected product represents is how much virus a susceptible animal would need to ingest to cause infection. Previous data on the infectious dose of classical swine fever, which is from intranasal infection experiments, indicate that as few as 10 TCID 50 units of the virus are required to cause infection. However, it is likely that a much higher level of virus will be required to cause infection when material is eaten. We have therefore determined the amount of the moderately virulent UK2000 virus that was required to cause infection when fed orally to pigs. Our results indicate that a much higher level of this virus, namely 10 4.35 TCID50 (CI 10 3.64 - 10 5.27 TCID50), is required to cause infection when fed to pigs. This indicates that the risk of a contaminated product to cause infection may be much less than previously thought. However, this level of virus can be present in only a few grams of tissue from an acutely infected animal. It is known that the virulence of a strain can affect the dose required to cause infection and so further investigation of the oral dose of a more virulent strain will be of benefit, to provide information on possible worst case scenarios. Project Report to Defra 8. As a guide this report should be no longer than 20 sides of A4. This report is to provide Defra with details of the outputs of the research project for internal purposes; to meet the terms of the contract; and to allow Defra to publish details of the outputs to meet Environmental Information Regulation or Freedom of Information obligations. This short report to Defra does not preclude contractors from also seeking to publish a full, formal scientific report/paper in an appropriate scientific or other journal/publication. Indeed, Defra actively encourages such publications as part of the contract terms. The report to Defra should include: the scientific objectives as set out in the contract; the extent to which the objectives set out in the contract have been met; details of methods used and the results obtained, including statistical analysis (if appropriate); a discussion of the results and their reliability; the main implications of the findings; possible future work; and any action resulting from the research (e.g. IP, Knowledge Transfer). Objective 1 To determine the thermal inactivation curves of classical swine fever virus (CSFV) in meat products Objective 2 To investigate the viral loads of classical swine fever in tissues which are included in meat products. Objective 3 To investigate the viral load in tissues used in meat products in vaccinated and challenged animals. SID 5 (Rev. 05/09) Page 3 of 14 Objective 4 To determine the oral ID50 of classical swine fever virus Objective 5 To investigate the effect of temperature of diagnostic samples on virus and viral RNA survival. (Objective removed) Classical swine fever virus is a highly infectious disease of pigs that has substantial economic and social implications for the pig production industry. Minimising losses caused by such diseases will become increasingly important to ensure future food security. Identifying the importance that different factors have on the likelihood of the introduction or spread of this exotic disease is required to allow proportionate strategies, which mitigate the risk of disease introduction without imposing undue restrictions, to be defined. To estimate the risk that products of porcine origin pose for the introduction of a disease such as classical swine fever it is necessary to know how much of the agent is likely to be present in a product, how long it will survive in that product, what is the likelihood that the product will contact a susceptible individual and how much of the product needs to be ingested by a susceptible individual for it to cause infection. This project aimed to provide data to increase our knowledge of some of these factors and thus reduce the uncertainties associated with future CSF risk assessments. To investigate the viral loads of classical swine fever in tissues which are included in meat products. This objective (2) aimed to add to the knowledge that already exists concerning the levels of virus found in tissues after infection with classical swine fever virus. The levels found vary with the virulence of the infecting strain, age of animals and stage of the disease (Farez & Morely). To provide definitive data on the viral load present under all these varying parameters would require substantial investigations, using large numbers of animals infected with different strains, at different ages and with samples harvested at different stages post infection. Such investigations were outside the scope of this project, rather our aim was to exploit material generated as part of a separate project that involved experimental infections with recently isolated strains of CSFV to add to the information that is already available. This will be useful to help refine estimates of the amount of virus likely to be present in a product derived from an infected pig, and will indicate if these estimates are relevant to recently isolated strains. As part of project SE0778, we inoculated a number of 10-week-old domestic pigs with two moderately virulent strains of CSFV; the UK2000 strain, that caused the last outbreak of CSF in the UK, and strain CBR/93, which was isolated in Thailand in 1993 and is genetically diverse from many strains previously studied in this context. We therefore measured the quantity of viable virus present in tissues from pigs infected with two strains of CSFV by determining the TCID50 (Dose that causes infection of 50% of tissue cultures) per gram of tissue. These animals were either infected by intranasal inoculation with 10 5 TCID50 of virus, or were infected by contact with inoculated pen mates. Samples were harvested at post mortem, which was generally between 12 and 18 pays post inoculation, although in-contact infected animals were usually euthanized at an earlier stage of infection. The highest viral loads were present in blood and blood rich tissues, such as spleen and liver. Lower levels were present in tissues that comprise the principle components of pork and pork products, namely skeletal muscle and fat. Levels in longissimus dorsi muscle (pork loin) samples ranged from detectable, but below the level quantifiable by the assay ie <103 TCID50/gm, up to a maximum of 10 median value of muscle samples with quantifiable levels was 10 median level in fat samples was 10 3.6 TCID50 gram (IQR 10 0.8) . 4 6.5 TCID50/gm in one animal. The TCID50 per gram (Inter Quartile Range IQR 10 1.1). The We could not detected virus in skin samples, although this result may have been affected by the difficulty in processing this sample type, as CSFV has been detected in skin biopsies (Kaden et al 2007). Although direct comparisons with other data are complicated by differences in methodology of analysis, and also in the way viral loads are reported (ie pfu/ml rather than TCID50 per gram), the values we have obtained are in a similar range to those reported previously by a number of authors (summarised in Farez & Morely), indicating that the levels of virus of these recent moderately virulent strains is similar to historic isolates, which are often more virulent. The one animal SID 5 (Rev. 05/09) Page 4 of 14 that we identified with 10 6.5 TCID50 per gram of muscle appears to have an unusually high level of virus in the muscle tissue and could be considered to represent the worst-case senario. Our results, and those of others are much higher than were reported by Mebus and colleagues (1993 and 1997). These authors reported a value of 10 1 pfu/gm in the muscle of production age pigs. This discrepancy could be affected by the fact that a measure of pfu/ml (plaque forming unit per ml) does not correspond directly to TCID50 measures and it should also be noted that the 10 1pfu/ml value is based on some assumptions as many of the samples tested were below the level of detection. However, this lower value could be a more accurate reflection of the viral load present in meat tissues as Mebus et al used production age pigs whereas our results, and those of other authors that were in the similar range, were from animals that were much younger, and as such are more susceptible to acute CSF infection, than when animals are slaughtered for pork production. Further investigations of the level of virus found in the tissues of older animals of normal slaughter age would therefore be of benefit. To determine the thermal inactivation curves of classical swine fever virus (CSFV) in meat products (amended to focus on serum) (Objective 1) It is also necessary to consider how long the virus will remain viable during any process or environmental condition to which the product may be subjected. Porcine products are subjected to a wide range of treatments and processing, the aim of this objective is to examine one parameter that affects virus stability, namely temperature. We therefore aimed to produce data on the rate that CSFV becomes non-viable in tissues, particularly muscle, at different temperatures. To provide a baseline to guide further experiments with valuable material from experimentally infected animals we generated data on the rate of inactivation of CSFV in tissue culture media. Aliquots of the reference virus strain Alfort 187 were incubated at the key temperatures of 65C, 60C, 56C, 35C and 25C. These temperatures were selected to cover a range of conditions that products containing virus may encounter. For example, EU rules (2002/99/EC) accepted that virus is inactivated at 70C provided this temperature is reached throughout meat. 65C was selected as a temperature lower than this to examine how long virus might survive if the target temperature for inactivation were not reached. 60C is of relevance for composting of material that may contain waste meat products; 56C is often used to inactivate biological sample such a serum and thus has relevance for biosecurity issues, 35C and 25 C were selected to give an indication of survival times at ambient temperatures. TCID50 values were calculated for triplicate aliquots at 8 time points for each temperature. The inactivation experiments were repeated 2 or 3 times for each temperatures and D values, or the time required for a 10 1 drop in the TCID50 value, were calculated from linear regression analysis of values above the quantifiable limit of the assay (Table 1). For example, the mean D-value at 65C was 1.64 minutes (SD 0.4), which indicates that a sample with a high viral load of say 106 TCID50/ml would have to be heated to 65C for 9.8 minutes to result in complete virus inactivation, whereas the D value at 25 C was 7.8 days, indicating that a sample with 106TCID50/ml would still contain viable virus up until around 46 days later. Table 1 Mean D values for CSFV strain Alfort in tissue culture media Temperature C D value (SD) 65 1.64 min (0.43) 60 6.6 min (0.67) 56 171 min (77) 50 3.12 hour (0.79) 35 1.47 day (0.24) 25 7.8 day (3.9) SID 5 (Rev. 05/09) Page 5 of 14 Fig 1. Effect of temperature on the survival of classical swine fever virus. Data points in blue are D-values obtained in tissue culture medium for the strain Alfort187. Values in pink are for the strain UK2000 in infected serum. Plotting the D values against temperature allows calculation of the Z value, or the temperature increase (C) required to reduce the D value one log, which for this CSFV strain in tissue culture medium is 10C. So, assuming the data remains linear outside of the range tested, estimations can be made about the virus survival at other temperatures. For example, it would be predicted that at 15C it would require around 105 minutes or 70 days for a one-log drop in viral titre. It was our original intension to determine the inactivation rate in tissue samples, particularly muscle tissues as it forms the major component of pork. Unfortunately attempts at this were hampered due to the relatively low starting level, and non-uniform distribution, of virus in this tissue. Although the level of virus is significant in terms of being a risk of infection to pigs (see below), it is close to the level of detection of the tissue culture TCID 50 assay and increasing the concentration of muscle tissue applied to the cell cultures has a detrimental effect on the cell monolayer. This caused technical difficulties in determining inactivation rates in meat tissue, which we are addressing in new project SE4010. We therefore focused in this project on determining the rate of inactivation of the virus in serum. Serum samples of various origin are often routinely treated at 56C for 30 minutes to “inactivate” them prior to handling outside of microbiological safety cabinets, for example for many ELISA tests. Although 56C for 30 minutes may be sufficient to inactive some viruses, this temperature is generally only suitable for inactivation of complement not viruses. The above results for inactivation of CSFV in tissue culture medium imply that it would SID 5 (Rev. 05/09) Page 6 of 14 require 177 minutes just to reduce the viral load by one log, indicating that 30 minutes may not be sufficient for inactivation of Classical swine fever virus in serum (although the data at 56C in tissue culture medium are somewhat at odds with those at other temperatures). Other reports (Aynaud et al) also indicate that 30min at 56C may inactivate some CSFV strains but not others. We therefore determined inactivation curves of CSFV in serum samples obtained from animals inoculated with the UK2000 virus strain. Triplicate inactivation experiments resulted in a mean D value for this virus of 38.3 minutes (SD 29min) (Data in pink on Fig 1). This result was consistent with the survival data in tissue culture medium and clearly indicates that 30 minutes at 56C is not sufficient to completely inactivate virus in serum with high viral titres. Increasing the time of incubation at 56C to 90 minutes, although not sufficient to completely inactivate very high titre sera would result in around a 2.3 log reduction in viable virus and could represent a compromise method to apply to minimise the risk posed by sera for which there is little reason to suspect CSFV presence. We therefore investigated the effect of incubating sera for 90 min at 56 C on detection of CSFV antibody using the PrioCheck CSFV antibody ELISA. Compared to untreated sera, treating sera at 56C for 90 minutes reduced the percentage inhibition values obtained in the ELISA for all samples. This had the result that some samples that would be detected as inconclusive if not treated gave a negative result when treated, and some samples that were positive when untreated became inconclusive when treated (Fig 2). Affect of Heat Treatment on CSFV Ab ELISA 150 PI Heat inactivated 100 50 -50 50 100 150 Samples positive without treatment but inconclusive with treatment -50 PI Not heat inactivated Samples inconslusive without treatment but negative with treatment Fig 2 Heat treatment at 56C for 90 minutes reduced the efficacy of the CSFV Ab ELISA. Dotted lines indicate the cut-off levels of the assay, Samples with a percentage inhibition (PI) >50% are considered positive, PI< 30% are negative, PI 31%-50% are inconclusive. These results indicate that procedures used for the treatment of samples that may potentially contain CSFV to inactivate them prior to removal from containment facilities must appropriately consider disease security and also the impact of such treatments on the validity of tests to be performed on such samples. SID 5 (Rev. 05/09) Page 7 of 14 Objective 3 To investigate the viral load in tissues used in meat products in vaccinated and challenged animals. The aim of this part of the project was to investigate how much challenge virus may be present in animals that have been vaccinated and subsequently exposed to challenge virus, to facilitate estimates of the risk that meat from animals, vaccinated for example as part of a vaccinate to kill strategy, might pose. A “vaccinate to kill” or suppressive strategy would use vaccination of animals around an infected premise, for example in the protection zone, to control spread of the followed by slaughter of vaccinates to prevent them harbouring field virus undetected. It is uncertain what risk meat from such animals would pose if it were to enter normal food production chains. Vaccinated herds would have to be closely monitored for the absence of field virus, for example by the use of sentinel animals, and/or laboratory detection by PCR. However it is not possible to screen every carcass and so the acceptance of the use of such meat requires more certain estimates of the risks posed. As part of project SE0778 we completed an experiment in which pigs were vaccinated with a highly effective live attenuated vaccine, and two further experiments where vaccinated animals were challenged with different CSFV strains at periods shortly after vaccination. The vaccine rapidly prevented spread of the challenge virus to animals in direct contact, indicating that it would be effective in reducing spread of CSFV if used in a vaccinate to kill strategy. We analysed blood and nasal swab samples of these animals with a quantitative PCR that detects all CSFV (ie vaccine and challenge strains). We have not detected vaccine virus in the blood of animals that were only vaccinated, indicating that any virus detected using this PCR assay on blood samples of vaccinated and challenged animals will likely be challenge virus. Some of the animals challenged very early post vaccination (1 day) were not protected from challenge, developed clinical signs and had high levels of CSFV RNA in blood. Other animals were partially protected by the vaccine and had reduced levels of viral RNA in the blood (Fig3) and nasal swabs. Fig 3: Total CSFV viral RNA loads in blood of animals vaccinated with attenuated vaccine and challenged 1 day later. To investigate in more detail how much of the virus present was challenge virus, as opposed to the vaccine, we examined tonsil and lymph node tissues of vaccinated animals subsequently exposed to challenge with quantitative PCR assays that discriminate between the vaccine virus and the challenge strains used. We initially developed assays, using locked nucleic acid probes, that specifically detect the challenge strains used in our experimental studies but not the vaccine strain. We also developed an assay that specifically detected the vaccine but not the challenge strains. This vaccine specific assay proved to be less sensitive than an alternative assay, developed by Leifer et al, that also only detects the vaccine strain and so the Leifer assay was used instead. As it was anticipated it would be difficult to detect the vaccine virus in muscle due to its absence from blood, we examined tissues in which CSFV usually accumulates at high levels (i.e. various lymph nodes and tonsils). Vaccine RNA was detected in some of these tissues, with the tonsils having the highest level of vaccine RNA. The vaccine strain could be detected in the tonsils of most of the animals vaccinated 5 days prior to challenge but SID 5 (Rev. 05/09) Page 8 of 14 was less prevalent in the tonsils of animals vaccinated at times closer to the challenge. Most animals that were protected from clinical disease by vaccination at 5 days prior to challenge had no detectable RNA from the challenge strain in the tonsil or lymph nodes, although one animal had a low level of the UK2000 virus RNA present in tonsils. Animals that were not protected clinically by the vaccination had high levels of challenge virus in these tissues. Notably, the UK2000 challenge strain could be detected in tonsils and lymph nodes of animals, in the day –3 and –1 groups, that were either completely or partially protected clinically. This was not observed with the CBR/93 strain (Table 2) SID 5 (Rev. 05/09) Page 9 of 14 Table 2 Viral RNA detected by PCR assays that differentiate vaccine from challenge strain in tonsil tissue from animals vaccinated at various time points prior to challenge with A) the UK2000 strain and B) the CBR/93 strain Total CSFV RNA +/+/++ + +/+ ++++ ++ + ++ +/++++ ++++ ++ ++ +++ ++++ ++++ ++++ ++++ ++++ ++++ A UK2000 Challenge strain RNA Nt +/+ ++++ + + ++ +/+++ ++++ ++ + ++ +++ ++++ Nt Nt ++++ ++++ Total CSFV RNA + +/+ + + + + + + +/+ ++ ++++ ++++ +++ ++ ++++ ++++ ++++ B CBR/93 Challenge strain RNA ++ ++++ nt ++++ ++++ Group Vaccinated -5 dpc Vaccinated -3 dpc Vaccinated -1dpc Unvaccinated Pig ID AD 2552 AD 2553 AD 2554 AD 2555 AD 2556 AD 2557 AD 2561 AD 2562 AD 2563 AD 2564 AD 2565 AD 2566 AD 2570 AD 2571 AD 2572 AD 2573 AD 2574 AD 2575 AD 2578 AD 2579 AD 2580 AD 2581 Group Vaccinated -5 dpc Vaccinated -3 dpc Vaccinated -1dpc Unvaccinated Pig ID AE 3003 AE 3004 AE 3005 AE 3006 AE 3007 AE 3008 AE 3012 AE 3013 AE 3014 AE 3015 AE 3016 AE 3017 AE 3021 AE 3022 AE 3023 AE 3024 AE 3025 AE 3026 AE 3027 AE 3028 AE 3029 SID 5 (Rev. 05/09) Page 10 of 14 Vaccine strain RNA Nt + ++ + ++ + + + +/+ + Vaccine strain RNA + +/+ + + +/+/+ +/+ +++ nt - Clinically protected, low or no viral RNA in blood Yes Yes Yes Yes Yes Yes No Yes Yes Yes Yes Yes No Partially Partially Partially No No No No No No Clinically protected, low or no viral RNA in blood Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Partially No No Partially Partially Partially No No No +/- = inconclusive + = 103 to 104 viral genome copies/g RNA ++ = 105 to 106 viral genome copies/g RNA +++ = 107 to 108 viral genome copies/g RNA +++ = 109 or above viral genome copies/g RNA nt = not tested These data indicate that in the unlikely event that vaccinated animals are exposed to challenge virus very shortly after vaccination, they may become infected and thus could harbour challenge virus. If this exposure is such that the vaccine provides little protection, it would be possible to identify this infection reasonably easily by clinical signs and molecular detection of the high levels of viral RNA in the blood. However, animals that are partially protected would be more difficult to detect on clinical signs or by molecular detection as they have low levels of virus in blood samples for short time periods. These data indicate that such animals can harbour challenge virus in the tonsils and lymph nodes. The inclusion of sentinel animals would potentially facilitate identification of such animals. Further analysis of archived muscle tissues from these animals would be beneficial to identify the level of challenge virus present in regions of the carcass that are more likely to enter the food chain, and may help answer questions on the level of risk represented by meat from such animals. During the use of the vaccine specific PCR assay described by Leifer et al 2009, which has been applied to assist detection of CSFV infection amongst vaccinated wild boar populations in France and Germany, we identified a sequence difference in the primer binding sites in different vaccine preparations. During the use of this assay in the field, discrepancies occurred between the PCR result and sequencing data: specifically sequencing had demonstrated the presence of vaccine, whereas the vaccine-specific PCR had indicated the samples were not vaccine. However, as these samples were positive with a PCR assay that detects all CSFV strains they were initially considered to be CSFV positive animals rather than vaccinated animals. The identification of this sequence difference in the primer lead to a collaborative study that has resulted in redesign of the vaccinespecific assay that detects all variants of the vaccine (Leifer et al 2010) and will hopefully improve the usefulness of this assay to differentiate infection from vaccination. Objective 4 To determine the oral ID50 of classical swine fever virus An important input for estimating the risk of a particular activity to cause a disease incident following a pig ingesting a product contaminated with CSFV, is knowledge on how much virus a susceptible animal has to eat to become infected. Data previously used for estimating the infectious dose for CSFV indicated that a very low dose, less than 10 TCID50, can result in disease. This is much lower than other viral hazards such as FMD and SVS and previous estimates of the risk of meat products have highlighted this as a major source of uncertainty in the models (Hartnett et al 2004). However, the 10 TCID50 value is based upon intranasal inoculation of very young weaner pigs, with a highly virulent CSFV (Dahle and Liess 1995). It is likely that the dose required to cause infection following ingestion will be higher than after intranasal inoculation. We therefore investigated what dose of the moderately virulent strain UK2000 is required to cause disease when fed orally. Corn covered blister pack baits, provided by IDT Biologika GmbH, were filled with ten-fold dilutions of media containing virus and fed to 5 groups of 6, ten-week old pigs. These blister packs are designed for the vaccination of wild boar and allowed SID 5 (Rev. 05/09) Page 11 of 14 introduction of the inoculum in a way that it is chewed, rather than directly swallowed. The rationale for this was that if the entire inoculum were swallowed it would be inactivated by the low pH in the stomach, whereas the method used allowed some contact of the inoculum with tissues in the mouth and tonsils, a primary site of virus replication. It is hoped this is a closer representation of what might happen if an animal were to eat an infected pork product than intranasal inoculation. Blood and nasal swab samples were every taken 2-3 days and virus infection monitored by real time RT-PCR. The time that viral RNA was detected in the blood of individual animals, compared with the time that virus was first detected in nasal swabs, allowed differentiation of animals infected by the inoculum from those infected by contact with previously infected pen mates. Only animals fed the highest two doses became infected (Table 3) Dose fed (TCID50) Number of pigs infected by feeding A 1.5x101 0/6 B 1.5x102 0/6 C 1.5x103 0/6 D 1.5x104 3/6 E 1.5x105 5/6 F Intranasal inoculated controls 2/2 Group Table 3: Infection of animals fed different doses of CSFV From these data the oral infectious dose was calculated using a logistic regression model to be 10 4.35 TCID50 with a 95% Confidence Interval of 10 3.64 to 10 5.27 TCID50. This suggests that the risk posed by pork products may be less than was estimated by risk assessments that used lower values. However, the level of virus present in muscle tissues still indicates that only a few grams of fresh infected tissue would need to be consumed to cause an infection. The virus used in this experiment is a recent genotype 2.1 isolate of moderate virulence and so can be considered representative of strains that have caused recent outbreaks in Europe and elsewhere. It is known that the virulence of a strain affects the dose required to infect animals intranasally, so it will be of benefit to determine the oral infectious dose of a highly virulent strain so that information on a virus that could be considered likely to occur and also the “worst case“ scenario are available. Aynaud JM, et al., 1972 Peste porcine classique: les facteurs d'identification in vitro (marqueurs génétiques) du virus en relation avec le pourvoir pathogène pour le porc. Ann. Rech. veter. Dahle and Liess (1995). Comparative study with cloned classical swine fever virus strains ALFORT and GLENTORF; clinical pathological, virological and serological findings in weaner pigs. Win.terarztl. Mschr Farez, S. & Morley, R. S. (1997). Potential animal health hazards of pork and pork products. Rev Sci Tech 16, 65-78. Hartnett., E., Adkin, A., Coburn, H., Hall, S., England, T., Marooney, C., Cooper, J., Cox, T., Miles, S., and Wooldridge, M. VLA and SafetyCraft Ltd (2004). Risk assessment for the import of conatminated meat and SID 5 (Rev. 05/09) Page 12 of 14 meat products into Great Britain and the subsequent Exposure of GB livestock:. Edited by F. a. R. A. D. Department of Environment: Department of Environment, Food and Rural Affairs (Defra) Publications, London PB9527 Mebus, C. A., M. Pineda, J.M. et al (1997). Survival of several porcine viruses in different Spanish dry-cured meat products Food chemistry 59, 555. Mebus, C. A., House, C., Gonzalvo, F. R., Pineda, J. M., Tapiador, J., Pire, J. J., Bergada, J., Yedloutschnig, R. J., Sahu, S., Becerra, V. & Sanchez-Vizcaino, J. M. (1993). Survival of foot-and-mouth disease, African swine fever, and hog cholera viruses in Spanish serrano cured hams and Iberian cured hams, shoulders and loins. Food Microbiology 10, 133-143. Leifer, I., Depner, K., Blome, S., Le Potier, M. F., Le Dimna, M., Beer, M. & Hoffmann, B. (2009). Differentiation of C-strain "Riems" or CP7_E2alf vaccinated animals from animals infected by classical swine fever virus field strains using real-time RT-PCR. J Virol Methods 158, 114-122. References to published material 9. This section should be used to record links (hypertext links where possible) or references to other published material generated by, or relating to this project. SID 5 (Rev. 05/09) Page 13 of 14 Leifer, I., Everett, H., Hoffmann, B., Sosan, O., Crooke, H., Beer, M. & Blome, S. Escape of classical swine fever C-strain vaccine virus from detection by C-strain specific real-time RT-PCR caused by a point mutation in the primer-binding site. J Virol ScienceDirect - Journal of Virological Methods : Escape of classical swine fever C-strain vaccine virus from detection by C-strain specific real-time RT-PCR caused by a point mutation in the primer-binding site Evaluation of a primer-probe energy transfer real-time PCR assay for detection of classical swine fever virus Xing-Juan Zhanga,b,1, Hongyan Xiac,d,1, Helen Everette, Olubukola Sosane, Helen Crookee, Sándor Belákc,d, Frederik Widénd, Hua-Ji Qiua,*, Lihong Liud,* Manuscript in preparation Poster presentation at 3rd Epizone Annual meeting Everett, H., Sosan, O., and Crooke H. (2009b). A differential PCR approach to monitor Classical Swine Fever Virus challenge strains during experimental infection of C-strain vaccinated pigs. In 3rd Epizone Annual Meeting Antalya Turkey, 12-15th July Poster presentation at Society for General Microbiology t Everett, H., Sosan, O., and Crooke H. (2010). A differential PCR approach to monitor Classical Swine Fever Virus challenge strains during experimental infection of C-strain vaccinated pigs. In SGM Spring meeting 2010, Systems, Mechanisms and Microorganisms 29th March-1st April 2010 SID 5 (Rev. 05/09) Page 14 of 14