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Journal of Experimental Botany, Vol. 49, No. 320, pp. 521–526, March 1998 Natural abundance of 15N in amino acids and polyamines from leguminous nodules: unique 15N enrichment in homospermidine T. Yoneyama1,3, S. Fujihara1 and K. Yagi2 1 Plant Nutrition Diagnosis Laboratory, National Agriculture Research Center (NARC), Kannondai 3–1-1,Tsukuba, Ibaraki 305, Japan 2 National Institute of Agro-Environmental Sciences, Kannondai 2–1-1, Tsukuba, Ibaraki 305, Japan Received 30 May 1997; Accepted 5 November 1997 Abstract The natural 15N abundance (d15N value) in acetylpropyl derivatives of amino acids and in ethyloxycarbonyl derivatives of polyamines was determined using a gas chromatography/combustion/mass spectrometer (GC/C/MS). d15N values determined for 12 amino acids and five polyamines by GC/C/MS were identical to those obtained by a direct combustion method using an automatic nitrogen and carbon analysis (ANCA) mass spectrometer, the difference being less than ±1.0‰ in most cases. The GC/C/MS method was used to analyse d15N values in the amino acids and polyamines from root nodules of pea and faba bean and from stem nodules of Sesbania rostrata. The analysis of d15N values revealed that homospermidine had high d15N values, as much as +40‰, while the amino acids investigated had d15N values between −3 and +6‰, putrescine between +2 and +8‰, cadaverine between +1 and +7‰, spermidine between −2 and +4‰, and spermine between 0 and +6‰. The mechanism of 15N enrichment in homospermidine is discussed. Key words: Amino acid, legumes, natural abundance of 15N (d15N), nodules, polyamines. Introduction Leguminous plants are able to fix atmospheric nitrogen by symbiosis with rhizobia (Rhizobium, Bradyrhizobium and Azorhizobium) located in root or stem nodules. Isotopic fractionation of 15N/14N during nitrogen fixation by leguminous plants was small (−0.2 to −2‰) when whole plant N was considered ( Yoneyama et al., 1986). However, the analysis of natural 15N abundance in the different tissues of leguminous plants has revealed that nodules, in some instances, had very high d15N values, while other plant tissues only showed differences of about 2‰ (Shearer et al., 1982; Yoneyama et al., 1986; Unkovich et al., 1994). This 15N enrichment in nodules was first recognized in legumes which export fixed N as ureides from the nodules to host plants (Shearer et al., 1982). However, further investigation showed that also in some amide-exporting legumes the nodules are enriched in 15N compared to other plant tissues ( Yoneyama, 1988; Unkovich et al., 1994). In the ureide-exporting nodules, the bacteroids were the most 15N-enriched N fraction, while the cytosol fraction was more 15N-enriched than the bacteroids in the amide-exporting nodules ( Yoneyama, 1988; Yoneyama et al., 1991a). Of the chemical fractions investigated, the polyamine-containing fraction, which was eluted by 2–6 N HCl solution from a cation exchange column (Dowex 50 W, H+ form), was enriched in 15N ( Yoneyama, 1988). The polyamine content in nodules from both amideand ureide-exporting species has been investigated. In both types of nodules, the major polyamines found were put, cad, spd, homospd, and spm (Fujihara et al., 1994). Homospd is the major polyamine found in cultured rhizobia (Fujihara and Yoneyama, 1993). Since the roots of legumes do not contain homospd, homospd in the 3 To whom correspondence should be addressed. Fax: +81 298 38 8837. E-mail: [email protected] Abbreviations: AP, acetylpropyl; EOC, ethyloxycarbonyl; Agm, agmatine; Put, putrescine; Cad, cadaverine; Spd, spermidine; Spm, spermine; Homospd, sym-homospermidine; GC/C/MS, gas chromatography/combustion/mass spectrometry; ANCA, automatic nitrogen and carbon analysis. © Oxford University Press 1998 522 Yoneyama et al. nodules may be produced in the bacteroids, in which homospd synthase activity was detected (Abe, 1994). In this communication, d15N values of individual amino acids and polyamines in the nodules from four legumes as determined by GC/C/MS are presented. Among them, homospd was specifically enriched in 15N. Materials and methods Nodules and rhizobia Two cultivars (Nimura and Shokusen) of pea (Pisum sativum L.) and one cultivar (Issun) of faba bean (Vicia faba L.) were grown in a field at NARC, Tsukuba, Japan and their root nodules were harvested, washed with distilled water and stored in a freezer until used as described by Yoneyama et al. (1991a). Sesbania rostrata was grown in a paddy field of NARC as described by Yoneyama et al. (1991b), and the stem nodules were harvested for analysis. Bradyrhizobium japonicum A1017 and Rhizobium fredii P220 were cultured as described by Fujihara and Yoneyama (1993), and collected by centrifugation for use in the experiments. Isolation of polyamines from nodules and their derivatization Homogenization of 2 g frozen nodules in 10 ml of 0.5 M HClO 4 for 10 min was followed by centrifugation at 10 000 rpm for 15 min at temperatures below 4 °C. To the supernatant 10 M KOH was added until it reached pH 7. KClO was removed by 4 centrifugation. The supernatant thus obtained was put on a cation exchange resin column (Dowex 50 W, 200–400 mesh, H+ form). The eluate with 0.5 N HCl was discarded, and the subsequent eluate with 6 N HCl was identified as the polyamine fraction. Analysis with GC showed that put, cad, spd, homospd, and spm were included in this fraction. The polyamine fraction was evaporated to dryness in a rotary evaporator at 50 °C in vacuo, and the residue was dissolved in distilled water to a volume of 1 ml. The polyamines were made volatile by conversion to EOC derivatives by reaction with ethyl chloroformate as described by Yamamoto et al. (1982). To the supernatant solution, containing 100–200 nmol of each polyamine, 0.5 ml of 100 g l−1 NaOH and 0.2 ml ethyl chloroformate were added, and it was shaken for 30 min at room temperature. Addition of 3 ml diethyl ether caused the polyamine-derivatives to move to the ethereal layer, and this was repeated three times. The combined extracts were evaporated to dryness at 50 °C under a N flow. After it had completely dried the residue was 2 dissolved in 60 ml ethyl acetate with addition of anhydrous Na SO to remove contaminating water. 2 4 Isolation of free amino acids from nodules and their derivatization Homogenization of 2 g frozen nodules in 10 ml of 80% (w/v) ethanol for 10 min was followed by centrifugation at 10 000 rpm for 15 min at temperatures below 4 °C. Ethanol in the supernatant was evaporated in a rotary evaporator at 40 °C, and the residue was put on a cation exchange resin (Dowex 50 W, 200–400 mesh, H+ form) column. The column was washed with distilled water, and then eluted with 0.5 N HCl. That this eluate contained the amino acids was confirmed by GC analysis. The amino acids were made volatile by conversion to AP derivatives by reaction with n-propanol and acetyl chloride as described by Merritt and Hayes (1994). 0.3 ml acidified n-propanol (produced by dropping acetyl chloride (5 vols) into n-propanol (20 vols) on ice) was added to the 0.5 N HCl eluate containing approximately 200 nmol of each amino acid. After cooling on ice, the acidified n-propanol was evaporated at 110 °C under a N stream, and the residue was 2 again cooled on ice. One ml of acetyl chloride/dichloromethane (151, v/v) was added, heated at 90 °C for 30 min, and thereafter cooled on ice. By heating at 90 °C under N , the remaining 2 acetyl chloride and dichloromethane were removed. The residue (derivatives) was dissolved in 60 ml ethyl acetate. Isolation of amino acids and polyamines from rhizobia and their derivatization After centrifugation of each of the two rhizobial cultures, 4% (w/v) HClO was added to the pellet and left overnight at 4 °C. 4 The supernatant obtained by centrifugation was neutralized by addition of 10 M KOH, and centrifuged again. The neutralized supernatant was put on a Dowex 50 W column, and washed by distilled water. By elution with 0.5 N HCl, the amino acid fraction was obtained, and by further elution with 6 N HCl, the polyamine fraction was obtained. The derivatization of polyamines and amino acids were conducted as described above for nodules samples. Analysis of d15N in derivatives by GC/C/MS For measurement of d15N values of polyamines and amino acids, a GC/C/MS method was employed, essentially as described by Merritt and Hayes (1994) for determination of d15N values in amino acids. The separation of individual derivatives of polyamines and amino acids was performed using a Hewlett Packard 5890 gas chromatograph with capillary columns of Hewlett Packard Ultra 1 (cross-linked methyl silicone gum, 25 m×0.32 mm×0.17 mm film thickness) or Shimadzu CB1-S25 (Methylsilicone 25 m×0.32 mm×0.50 mm). Both were non-polar and gave similar separation of derivatives. Injection temperature was 285 °C. The temperature of the capillary column was raised from 140 to 280 °C at the rate of 8 °C min−1 for EOC-derivatives (polyamines) and from 100 to 260 °C at the rate of 6 °C min−1 for AP-derivatives (amino acids). Helium gas was used as carrier gas (1 ml min−1) at 10 psi as the head pressure. The combustion was done by an oxidation column of NiO/Pt/CuO at 960 °C and the reduction column of Cu was kept at 600 °C Standard N gas (−4.3‰) 2 was injected at the start, the end and also occasionally between peaks. A Finnigan Mat 252 mass spectrometer was used to monitor the intensity of mass 28, 29, and 30, and the outputs of the mass 28 peak and the ratio of 29/28 were obtained. Analysis of d15N by ANCA mass spectrometer The d15N values of 12 authentic amino acids and five authentic polyamines, and amino acids and polyamine fractions from nodules were analysed with an on-line ANCA-SL mass spectrometer (Europa Scientific, Crewe, UK ). All the d15N values of the samples were expressed as permil (‰) deviation from that of the atmospheric dinitrogen (standard ): d15N=[(15N/14N ) /(15N/14N ) −1]×103 . sample standard Results and discussion d15N determination of authentic amino acids and polyamines The d15N values of 12 amino acids and five polyamines determined by GC/C/MS were compared to those measured by on-line ANCA-SL mass spectrometer ( Table 1). d15N of polyamines from nodules 523 Table 1. The d15N values of amino acids and polyamines determined by ANCA-SL and GC/C/MS Amino acid/polyamine Glycine Serine -Valine Leucine Isoleucine Threonine Proline Aspartic acid Glutamic acid -Arginine Histidine -Lysine Putrescine Cadaverine Spermidine Homospermidine Spermine d15N (‰) ANCA-SL GC/C/MS +1.9±0.1 +8.2±0.2 +9.5±0.2 +0.7±0.3 −1.6±0.5 −3.5±0.1 −5.1±0.1 −1.9±0.1 −3.8±0.1 −2.3±0.2 −3.0±0.1 −0.5±0.1 −8.7±0.3 −3.4±0.2 −0.7±0.3 −5.0±0.2 +0.5±0.2 +1.3±0.8 +9.2±0.7 +10.2±1.5 +0.8±0.7 −0.6±0.5 −3.5±0.3 −4.8±0.8 −1.8±0.7 −3.5 −4.6 −2.6 −1.5 −8.9±0.8 −3.3±0.9 −1.3±0.5 −4.7±0.8 −1.6±0.6 Data are means ±SD of 2–3 analyses, except for the GC/C/MS data of glutamic acid, -arginine, histidine and -lysine which were single analyses. The differences in d15N values between the two methods were within 1‰, except for -arginine and spermine, whose d15N values measured by GC/C/MS were 2‰ lower than those by ANCA-SL. Previous analysis of d15N values in nine amino acids (alanine, glycine, leucine, norleucine, serine, proline, aspartic acid, hydroxyproline, and phenylalanine) by GC/C/MS also gave identical results as those by conventional ratio mass spectrometer (Merritt and Hayes, 1994). The variations of d15N values in amino acids and polyamines from biological samples reported by Gaebler et al. (1963) and Minagawa et al. (1992) and in this report were larger than the variation caused by GC/C/MS analysis. Therefore, it is considered that GC/C/MS is very valuable for the analysis of d15N values in individual N-containing compounds, using volatile derivatives. d15N values of amino acid and polyamine fractions The d15N values in amino acid and polyamine fractions from nodules are shown in Table 2. The d15N values in the amino acid fraction were close to the reference (atmo- spheric N ), while those in the polyamine fraction were 2 higher than the reference value. In particular, the amounts of polyamine N in the nodules from pea cv. Nimura and in faba bean cv. Issun were small, but their d15N values were extremely high. Previous analysis ( Yoneyama et al., 1991a, b) showed that the total N contents of nodules were 5–7 mg g−1 FW, and their d15N values were −0.5‰ in pea cv. Nimura, +1.0‰ in pea cv. Shokusen, +6.1‰ in faba bean cv. Issun, and +8.1‰ in Sesbania rostrata used in the present investigation. When the nodules were fractionated into the plant cytosol, bacteroids, and nodule residue, the plant cytosol (in particular its soluble N ) showed slight enrichment in 15N in cv. Nimura and cv. Shokusen nodules, and the bacteroids and plant cytosol (in particular its soluble N ) had high d15N values in faba bean and Sesbania rostrata nodules. The proportion of the N from whole nodules found in the polyamine fraction was: 1.7% in pea cv. Nimura, 2.9% in pea cv. Shokusen, 1.2% in faba bean cv. Issun, and 4.2% in Sesbania rostrata. The contribution of d15N by the polyamine fractions was around 0.2‰ in the whole nodules, indicating that other nitrogenous compounds contribute significantly to the increase in d15N of nodules like in those from faba bean and Sesbania rostrata in this investigation. d15N values of amino acids In Table 3, the d15N values of major N peaks of amino 2 acids from nodules and cultured rhizobia on GC/C/MS are shown. In nodules, aspartic acid (including aspartic acid from asparagine) was the most abundant amino acid followed by glutamic acid (including glutamic acid from glutamine) ( Kouchi and Yoneyama, 1986). In contrast, glutamic acid was present in the largest amount in the rhizobial cells (Fujihara and Yoneyama, 1993). The variation in d15N values among amino acids in nodules was between −3 and +6‰ and that in rhizobia was between −2 and +8‰. The relatively high d15N values in arginine from pea and faba bean nodules may suggest 15N enrichment of the guanidino in this molecule as reported by Medina and Schmidt (1982). Separation of some amino acids was not so clearcut as that of polyamines, due to the fact that many amino acids were present in small Table 2. The N contents and d15N values of amino acid and polyamine fractions from nodules Nodules Pea (Pisum sativum) cv. Nimura Pea (Pisum sativum) cv. Shokusen Faba bean (Vicia faba) cv. Issun Sesbania rostrataa aStem nodules. Amino acids Polyamines N ( mg g−1 FW ) d15N (‰) N ( mg g−1 FW ) d15N (‰) 983 620 520 233 −1.1 −1.5 +0.7 +0.2 125 209 69 270 +14.1 +3.7 +10.2 +5.7 524 Yoneyama et al. Table 3. The d15N values of amino acids from nodules of four legume species and two strains of rhizobia d15N (‰) Amino acid Pea cv. Nimura Pea cv. Shokusen −2.7±0.1 +4.4 Glycine, alanine, serine Valine c-Amino butyric acid Threonine Proline Aspartic acida Glutamic acidb Arginine −3.2±0.6 +4.0±2.0 −3.1±2.0 +5.0 +0.9±0.1 −1.6±0.8 +2.6±0.9 −1.2±0.3 Faba bean cv. Issun +2.5 +3.2 +1.6 −1.8 +2.1±0.6 +0.6±0.2 +6.1 S. rostrata +1.9±0.1 +1.6±1.3 −2.1±0.9 −2.0 +0.8 B. japonicum A1017 R. fredii P220 +5.3±0.9 +2.0 +2.0 +5.8±0.8 +5.8±2.3 +8.1±0.6 +4.9±1.3 −0.9±0.2 +5.7±0.5 −1.7±0.2 +2.3 +5.5±1.2 +5.0±1.6 +6.9±1.2 +4.0±0.6 Data are means ±SD of 3–4 analyses. aAspartic acid from aspartic acid and asparagine. bGlutamic acid from glutamic acid and glutamine. quantities in the nodules and their peak heights were lower, and more variable than those of neighboring amino acids present in larger amounts. The largest peaks (aspartic acid in nodules and glutamic acid in rhizobia) gave consistent d15N values in repeated analysis. However, further separation of the less abundant amino acids is required. 15N enrichment in polyamines This study indicates that the alkaline fraction, eluted by 6 N HCl, had much higher d15N values than the amino acid fraction ( Table 2). Separation into individual polyamines ( Table 4) revealed that homospd was especially 15N-enriched, with d15N values as high as 40‰. The d15N values of put were between +2 and 8‰, those in cad were between +1 and +7‰, those in spd were between −2 and +4‰ and those in spm were between 0 to +6‰. However, homospd from rhizobia was not much enriched in15N, compared to put ( Table 4) and amino acids ( Table 3) from rhizobia. Homospd is produced in the bacteroids by homospermidine synthase encoded by the rhizobia (Abe, 1994; Fujihara et al., 1995). It is very likely that homospd produced in the bacteroids is highly enriched in d15N and that this homospd is largely retained in the bacteroids in soybean (Glycine max), adzuki bean (Vigna angularis), Sesbania rostrata and faba bean, while the homospd produced in the bacteroids of pea may easily leak out of the bacteroids. This may result in 15N enrichment of the bacteroids in the former nodules and of the soluble N in the latter nodules ( Yoneyama et al. 1991a, b). In fact, the polyamine fractions in the cytosol were slightly enriched, while those fractions from the bacteroids in adzuki bean and soybean nodules were highly enriched in 15N ( Yoneyama, 1988). The 15N enrichment in the soluble N of the cytosol in pea and faba bean nodules was more obvious in mature and senescent nodules than in young nodules ( Yoneyama et al., 1991b). 15N-enriched homospd might be more released to the plant cytosol in aged nodules. Possible processes resulting in 15N enrichment of homospd Put is synthesized from ornithine by ornithine decarboxylase or from arginine by three enzymes, arginine decarboxylase, agm iminohydrolase and N-carbomoylputrescine amidohydrolase ( Tiburcio et al., 1990). Cad is synthesized from lysine decarboxylase. Spd is synthesized from put and decarboxylated S-adenosylmethionine by spd synthase, while homospd is synthesized from two molecules of put by homospd synthase with the reduction of NAD ( Tait, 1985). The catalytic reaction of homospd synthase consists of the following three processes: (1) oxidation of put to form 4-aminobutyraldehyde (a deamination reaction), (2) Schiff base formation between put Table 4. The d15N values in polyamines from nodules of four legume species and two strains of rhizobia Polyamine Putrescine Cadaverine Spermidine Homospermidine Spermine d15N (‰) Pea cv. Nimura Pea cv. Shokusen Faba bean cv. Issun S. rostrata B. japonicum A1017 R. fredii P220 +2.4±0.5 +1.4±0.3 −2.4±0.2 +39.8±2.7 +2.0±1.7 +4.8±2.2 +3.6±1.3 −2.4±1.3 +40.1±2.5 +0.4±0.4 +8.2+0.9 +9.3±3.1 +4.4±0.5 +39.1±2.6 +6.1±2.4 +3.8±1.1 +1.9±1.1 −2.4±1.4 +38.9±2.9 −0.1±0.7 +5.6±1.3 +7.8±2.2 +8.4±1.9 +7.0±1.6 Data are means ±SD of 3–4 analyses. d15N of polyamines from nodules 525 and 4-aminobutyraldehyde, and (3) reduction of the intermediate to form the final product homospd using the NADH produced by process (1). The exceedingly high enrichment of d15N in homospd molecules separated from nodules and the contrasting small enrichment of those from rhizobia ( Table 4) suggest the possibility that reactions to form homospd in nodule bacteroids may include the processes resulting in higher 15N enrichment in homospd than in rhizobia growing in the synthetic liquid media. Both put in rhizobia and in bacteroids may be synthesized via the ornithine pathway and/or from arginine by the pathway as has been reported in most bacteria ( Tabor and Tabor, 1985). Although the arginine pathways includes two reactions liberating ammonia, which may result in 15N enrichment in the precursor substances, the guanidino N does not remain in the put molecule. As the source of ornithine in the bacteroids, glutamic acid transferred from the cytosol ( Kouchi et al., 1991) is possible. In the bacteroids, a part of the glutamic acid may be deaminated (releasing ammonia), to form a-keto glutaric acid as the source of respiration. The remaining glutamic acid (source of ornithine) may be enriched in d15N. However, the d15N values of glutamic acid were not high, when whole nodules were analysed ( Table 3). Separate analysis of d15N of glutamic acid from the cytosol and bacteroids is necessary. Homospd synthesis from put includes ammonia liberation to form 4-aminobutyraldehyde; This process may result in 15N enrichment of the remaining put. In the nodules, the d15N values of put ( Table 4) were higher than those of glutamic acid, a possible precursor for ornithine and then put ( Table 3). Put degradation by amine oxidase, which releases ammonia ( Tiburcio et al., 1990; Ozawa et al., 1997) is another step leading to 15N enrichment in the remaining put. These branched reactions may increase the 15N content in the final substrate (put) to synthesize homospd. d15N values of put were relatively higher than those of plant-produced polyamines (cad, spd, and spm), but not as much as those of homospd in the nodules ( Table 4). Put is produced both in plant cytosol and bacteroids; Separate analysis of d15N of this molecule is also necessary. Predominant formation of homospd in bacteroids (Abe, 1994) from the put thus enriched in 15N may result in 15N enrichment. Synthesis and retention of homospd in rhizobia last a short period, whereas those in bacteroids may take a long period. Under such conditions, homospd in the nodules might be metabolized further releasing ammonia like in oxidative deamination of spd (Smith, 1985). Recently homospd metabolites were identified in various legume nodules (Fujihara et al., 1996). The homospd metabolite, which contains unsaturated bonds, was not detected in cultured rhizobia. It is not yet known whether homospd is deaminated in nodules, although activity of spd oxidase was found in soybean nodules (Ozawa et al., 1997). The deamination of homospd may result in further 15N enrichment of the remaining homospd. 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