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EOC Review 08-09 Goal 3: The learner will develop an understanding of the continuity of life and the changes of organisms over time. -DNA-Deoxyribonucleic acid. The blueprint of life. Found in the nucleus. Takes the shape of a double helix. Composed of repeating units called nucleotides. Each nucleotide has 3 parts 1. sugar (deoxyribose) 2. phosphate 3. a nitrogen base (adenine, cytosine, guanine, thymine) -Complementary base pairing: A-T, C-G - The two strands of the DNA molecule are held together by hydrogen bonds formed between complementary nitrogen bases. -DNA, like a blueprint, contains information for cells to function, and for the organism made up of those cells to function as a whole. It does these things by determining the proteins that will be produced by certain cells. - The double helix model of DNA structure was developed by Watson and Crick. -Replication- process by which DNA is duplicated before a cell divides. The end result of replication is two molecules of DNA, each of which contains one old strand and one new strand. Replication of DNA must take place before cells can divide. It allows daughter cells to have an exact copy parental DNA. Mutation – a change in the DNA sequence. Mutation is the original source of variation and may be helpful, harmful, or have no effect. Mutation can lead to the production of a nonfunctional protein. Several common types of mutations are shown in the diagram at the right. 9 EOC Review 08-09 PROTEIN SYNTHESIS - linking amino acids in the proper order to make a functional protein -transcription- the process of copying DNA code onto mRNA. Transcription takes place in the nucleus. Following transcription, mRNA travels to the ribosome where translation takes place. -translation-synthesis of a polypeptide from the information carried by mRNA. Translation takes place in the cytoplasm on the ribosomes. -RNA-Ribonucleic acid. Thymine is replaced by Uracil. Complementary base pairing: A-U, C-G 3 types of RNA mRNA- messenger RNA. Copies the DNA code. tRNA- transfer RNA. Picks up amino acids and transports them to the ribosome. rRNA- ribosomal RNA. Structural component of the ribosome. Sequence of events in protein synthesis - mRNA copies DNA (transcription) - mRNA carries DNA code to ribosome - tRNA brings correct amino acids to mRNA at ribosome (translation) - amino acids join to form a protein (polypeptide) 10 EOC Review 08-09 -Know how to read the following chart. U C A G - U Phe Phe Leu Leu Leu Leu Leu Leu lle lle lle Met Val Val Val Val C Ser Ser Ser Ser Pro Pro Pro Pro Thr Thr Thr Thr Ala Ala Ala Ala A Tyr Tyr stop stop His His Gin Gin Asn Asn Lys Lys Asp Asp Glu Glu G Cys Cys stop Trp Arg Arg Arg Arg Ser Ser Arg Arg Gly Gly Gly Gly U C A G U C A G U C A G U C A G codon- series of three nitrogen bases or nucleotides that codes for a specific amino acid. EX: AAG = lysine UGA = stop GUU = valine - If DNA is copied incorrectly, the wrong amino acid may be placed in a protein, or in the case of a frameshift mutation, everything from the mistake forward may be incorrect. CELL DIVISION -Cell cycle = interphase + mitosis + cytokinesis - interphase – preparation for cell division- cell grows and DNA is copied. - mitosis – division of the nucleus - cytokinesis- division of the cytoplasm. 11 EOC Review 08-09 MITOSIS -surface to volume ratio- the outer surface of a cell grows more slowly than the volume of material inside the cell. When the surface of a cell is no longer large enough to let in the proper amounts of food and let out wastes, the cell divides. The two smaller cells have a larger ratio of surface area to cell volume and are able to function better. -mitosis- Makes an exact copy of parent cell. Is used for growth or replacement of cells in multicellular organisms, and reproduction in unicellular organisms. - Be able to put diagrams of phases in correct order and describe what is happening in each phase. - Be able to tell what is happening with chromosome number at each step. -know how animal mitosis differs from plant mitosis Plant Do not have centrioles Divide by laying down a cell plate Animal Do have centrioles Divide by pinching in half (cleavage furrow) 12 EOC Review 08-09 MEIOSIS Meiosis - Used to produce cells with half the number of chromosomes found in the parent cell (gametes such as sperm and egg cells). - Review diagram- know how to put diagrams in order, what is happening in each phase, and how the chromosome number changes from phase to phase. 13 EOC Review 08-09 MITOSIS MEIOSIS All body cells Certain cells of reproductive organs NUMBER OF CELLS PRODUCED PER PARENT CELL CHROMOSOME NUMBER OF PARENT CELL Two Diploid or haploid Four (in egg cells three will die, leaving only one) Diploid (2n) CHROMOSOME NUMBER OF DAUGHTER CELL Same as parent Haploid (n) Various somatic cells such as skin and bone Genetic continuity from cell to cell Animal gametes (sperm & egg) or certain spores Promotes variation and genetic recombination OCCURS IN KIND OF CELL PRODUCED FUNCTION SEXUAL VS. ASEXUAL REPRODUCTION -Asexual reproduction occurs among members of all kingdoms and in general is the only means of reproduction used by monerans (bacteria). All methods of asexual reproduction result in the production of offspring that are identical to the parent and to one another. Asexual reproduction is an advantage for organisms that live in a constant unchanging environment because it produces organisms just like those that are already well adapted to the environment. Methods of asexual reproduction include: -binary fission- type of asexual reproduction in which an organism divides to produce two identical daughter cells. (bacteria or paramecium) -budding or vegetative reproduction- asexual reproduction in which a new organism is produced by means of an outgrowth that breaks off from the parent. Occurs in hydra and yeast. -fragmentation- asexual reproduction in which whole new adults are formed from fragments of the original organism by regeneration. (sponge or starfish) -spore formation- a spore is a reproductive cell capable of developing into a new haploid organism without first fusing with another cell. (fungi) -parthenogenesis a process in which the egg develops into an offspring without being fertilized. Organisms produced by parthenogenesis are often haploid, but may be diploid as the result of the formation of special diploid zygotes. Ex: Male honeybees (drones) are produced parthenogenically. Females (both sterile workers and queens) are produced by from fertilized eggs. - Vertebrate Ex: There are 15 species of whiptail lizards that reproduce parthenogenically. They are all females. 14 EOC Review 08-09 -Sexual reproduction-involves gametes that combine DNA and produce offspring different from one another and from the parents. Sexual reproduction is an advantage in a changing environment because it allows for variation and genetic recombination, which are necessary for evolution. During gamete production genetic variation is increased through crossing over and independent assortment of chromosomes. -conjugation- a form of sexual reproduction carried out by bacteria, some algae, and fungi. It involves the transfer of genetic material from one cell to another by cell-to-cell contact. (paramecium) -Plants have a life cycle in which the sporophyte and gametophyte generations alternate with one another. The diploid sporophyte generation is the major stage in Angiosperms. -Animals do not undergo alternation of generations, and only their gametes are haploid -Eggs of animals may be fertilized either internally or externally. GENETICS - Gregor Mendel- the father of genetics. Developed the laws and principle listed below. -Conducted research with pea plants. The Principle of Dominance- when you cross a homozygous dominant with a homozygous recessive, all the offspring will exhibit the dominant trait. The Law of Segregation- While each individual carries a pair of factors for a given trait, during gamete formation the two alleles are segregated and only one goes into each gamete. The Law of Independent Assortment- factors for different characteristics are distributed to gametes independently. The exception to this is when the genes for different traits are carried on the same chromosome. Gene linkage- when genes are carried on the same chromosome they are said to be linked or belong to the same linkage group. -phenotype- a term used to designate the physical appearance of an organism and distinguish it from its genetic make up. - genotype - a term used to designate the genetic composition and distinguish it from the appearance (phenotype) -homozygous- the condition of having two identical alleles. Ex: HH, or hh -heterozygous- the condition of having two different alleles. Ex: Hh -know dihybrid cross TTYY X ttyy TTYY TY ty TY TY TtYy TtYy TtYy TtYy All gametes ty ttyy ty All gametes All offspring 100% Dihybrid TtYy 15 EOC Review 08-09 TtYy X TtYy TtYy TY Ty tY ty Possible Gametes TY TY TTYY Ty tY ty TTYy TtYy TtYy Ty TTYy TTyy TtYy Ttyy tY TtYY TtYy ttYY ttYy ty TtYy Ttyy ttYy ttyy ****Remember the phenotypic ratio for this one is 9:3:3:1 - Dominant allele – form of a trait that masks the expression of the recessive allele Recessive allele– form of a trait that is masked by the dominant allele - Test Cross – Cross an organism of dominant phenotype and unknown genotype with an organism that is homozygous recessive. If any of the offspring exhibit the recessive phenotype, the unknown genotype parent must be heterozygous. -Incomplete dominance- inheritance pattern where the phenotype of a heterozygous individual is intermediate between those of the two homozygotes. The genotype of the individual is obvious from the phenotype. Ex: red, white, and pink snapdragons. -Codominance- pattern of inheritance where the phenotype of a heterozygous individual shows the expression of both alleles. EX: checkered chicken, or roan horse. Also human blood types. The genotype can be determined by observing the phenotype. 16 EOC Review 08-09 Multiple alleles- even though each individual carries only two alleles for a given trait, there are more than two alleles for the trait in the population. Ex: A,B,O, blood groups. Blood Type Possible Genotype(s) A A A A I I ,I i B IBIB, IBi AB IAIB O ii Show the likely results of a cross between a man with type AB blood and a woman with type O blood. IAIB x ii IA IAi IAi IB IBi IBi Charles Drew -developed a system to produce plasma, separating it from the blood matter. In 1941, he became the first medical director of the first American Red Cross Blood Bank in the United States, which produced dried plasma that could be preserved longer than the liquid plasma. The pioneering medical work of Dr. Drew, a distinguished African American, saved the lives of thousands of wounded Allied serviceman during the Second World War. Polygenic Inheritance - a pattern of inheritance in which many genes affect a single trait. - Ex: Genes A, B, and C control skin color. If the dominant alleles code for darker skin and the recessive alleles code for lighter skin, the following pattern would result. - Genotype Phenotype - AABBCC darkest skin - AaBBCC very dark skin - AaBbCC dark skin - AaBbCc medium skin - aaBbCc light tan skin - aabcc very pale skin Traits controlled by polygenic inheritance usually show continuous variation Continuous variation- gradations in traits ranging from one extreme to the other with the largest number of individuals exhibiting the phenotype that is mid way between the extremes. (Ex: colors of hair, skin color, eye color, height). A graph of phenotype vs. number of individuals will take the shape of a bell curve. 17 EOC Review 08-09 GENETIC DISORDERS TO KNOW DISORDER SYMPTOMS Cystic Fibrosis Sickle cell anemia Tay-Sachs disease Phenylketonuria Hemophilia Huntington’s Disease Muscular dystrophy Mucus clogs lungs, liver, and pancreas; usually don’t survive to adulthood Poor blood circulation Deterioration of central nervous system in infancy; usually don’t survive to adulthood. Failure of brain to develop in infancy; usually don’t survive to adulthood if untreated. If treated with special diet from birth, individual will develop normally Failure of blood to clot Gradual deterioration of brain tissue in middle age; shortened life expectancy Wasting away of muscles; shortened life expectancy DEFECT Failure of chloride ion transport mechanism DOMINANT OR RECESSIVE Recessive FREQUENCY 1/1,800 (whites) Abnormal hemoglobin molecules Defective form of enzyme hexosaminidase A Recessive Defective form of enzyme phenylalanine hydroxylase Recessive 1/18,000 Defective form of blood clotting factor IX Production of an inhibitor of brain cell metabolism Sex-linked recessive 1/7,000 Muscle fibers degenerate and atrophy Sex-linked recessive Recessive 1/1,600 (African Americans) 1/1,600 (Jewish) 1/10,000 Dominant 1/10,000 18 EOC Review 08-09 -Sex-linked traits- traits controlled by genes located on one of the chromosomes that determine the sex of the individual. Most sex-linked traits are carried on the X chromosome, rather than the Y because the X chromosome is much larger than the Y. Examples : Color blindness, hemophilia, Duchene Muscular Dystrophy, Eye color in flies Example of Sex-linked Cross: Red-green colorblindness Husband, color blind X Wife, normal color vision XcY Xc XC XC XCXc Normal color vision XC Female carrier XCXc Normal color vision XC Female carrier X XCXC Y XCY Normal color vision Male XCY Normal color vision Male Genotypic ratio 2/4 or 50% XCXc 2/4 or 50% XCY Phenotypic Ratio 2/4 or 50% Female carriers w/ normal color vision 2/4 or 50% Males with normal color vision -pedigree- a chart showing how a trait is inherited in a family - most genetic disorders are caused by recessive genes. 19 EOC Review 08-09 -Karyotype- photograph of the chromosomes of an organism. Used to detect certain chromosomal abnormalities such as Down Syndrome. Also shows gender of individual. A karyotype can be produced using material withdrawn during amniocentesis. Note – 3 copies of the 21st chromosome = Down Syndrome which is caused by non-disjunction. Note – 23rd pair of chromosomes = sex chromosomes. XX = female XY = male DNA TECHNOLOGY - used in forensics, medicine, and agriculture. The Human Genome Project- The international effort to completely map and sequence the human genome which is the approximately 35,000 to 40,000 genes on the 46 human chromosomes. The project is useful in determining whether individuals may carry genes for genetic conditions and in developing gene therapy. gel electrophoresis- separation of DNA fragments by length. Used to produce a DNA fingerprint which can be used to identify individuals, determine parentage, or as evidence in a crime. 20 EOC Review 08-09 -plasmid- small circular pieces of DNA in some bacterial cells that is often used in genetic engineering. -recombinant DNA- DNA molecule that forms from the combination of portions of two different DNA molecules. - transgenic organism- organism containing DNA from another organism. The process shown in this diagram is used to produce human insulin and human growth hormone. Clone – exact genetic copy gene therapy-the treatment of genetic diseases by introducing normal genes into body cells. Viruses are often used as a vehicle to insert the donor DNA into the defective cell. Working on a way to use this to treat cystic fibrosis. Be aware that there are ethical implications and possible dangers in biotechnology. Analyze and explain the role of genetics and environment in health and disease. Interaction between genetics and environment ultimately determine human health. -There are purely genetic conditions: sickle cell, colorblindness, cystic fibrosis, hemophilia, Down syndrome (trisomy 21), and Huntington’s disease. - There are conditions with genetic and environmental components such as; cardiovascular disease, diabetes, cancer, and asthma. - There are conditions with primarily environmental causes such as malnutrition and lead poisoning. - Some common environmental risk factors include radiation and tobacco smoke. 21 EOC Review 08-09 EVOLUTION Abiogenesis or Spontaneous generation – The belief that living things could arise from non-living things (maggots from rotting meat) Biogenesis – The belief that life comes only from other life. This was proven by Louis Pasteur using the curved neck flasks which allowed air to enter and exit the container, but prevented contamination from reaching the broth inside. Earth’s early atmosphere did not contain oxygen. -Stanley Miller and Harold Urey- conducted an experiment to show how organic matter may have formed in Earth's primitive atmosphere and how the first life forms may have come to be. -Miller recreated what he thought might have been Earth's earliest atmosphere by mixing methane ammonia, water and hydrogen in a flask. He then exposed the contents of the flask to electric sparks to simulate sunlight and lightening on primitive Earth. After several days Miller found several amino acids as well as urea, acetic acid and lactic acid. -Miller showed that organic matter such as amino acids could have formed spontaneously in the conditions present on primitive Earth. 22 EOC Review 08-09 The first organisms on Earth are believed to have been heterotrophic and prokaryotic. -Over time organisms evolved from very simple to very complex. - Humans and dinosaurs were not on Earth at the same time! EVOLUTION Charles Darwin is credited with developing the theory of Evolution by means of Natural Selection -The finches Darwin observed on the Galapagos Islands were of 14 different species. While they varied in size, feeding habits and beak structure, they had many characteristics in common. Darwin believed they were all descended from a species of finch commonly found on the mainland. He believed a flock of mainland finches had been blown to the island by a storm. Depending on which island a bird inhabited and the type of food that was available there certain beak structures would be favored over others. Through natural selection the favored beak type would become the predominant beak for finches on that island. Since the birds did not fly from one island to another, over a period of many years the ancestor finch evolved in different directions to produce the different species seen on the different islands. - Evidence for evolution 1. Fossil record - Relative dating vs. absolute dating 2. comparative anatomy -homologuos structures- parts of different organisms, often quite dissimilar, that developed from the same ancestral body part. Not all homologous structures serve important functions, in fact they may be just vestiges or traces of what they were in an ancestral organism. This type of organ is called a vestigial organ. Examples of vestigial organs include the human tailbone and appendix, and the vestiges of leg bones in some snakes. 23 EOC Review 08-09 3. comparative embryology- the study of developing organisms. Relationships not always visible in the fully developed organism may be more clearly seen by looking at the developing organisms. The more alike the development of two organisms is the more closely related they are thought to be. 4. comparative biochemistry- the more closely related two species are, the more closely their important chemical compounds resemble each other. (EX: comparing the amino acid sequence in the hemoglobin of two different organisms) 5. comparison of DNA The more similar the DNA sequences of two organisms the more closely related they are believed to be. - Remember variation provides the raw material necessary for natural selection and evolution. -divergent evolution- when one species evolves into two or more species with different characteristics. -adaptive radiation-divergent evolution and adaptation of a species over time in response to a new environment. (EX; Darwin's finches) -geographic isolation- geological change (Ex; formation of a river, canyon, or mountain) that isolates segments of a population. If conditions are different in the two newly separated regions then the two newly separated groups may evolve in different directions and eventually become different species. Reproductive isolation- occurs when formerly interbreeding organisms can no longer produce fertile offspring due to an incompatibility of their genetic material or by differences in mating behavior. -speciation- evolution of a new species. -population- collection of individuals of the same species in a given area whose members can breed with one another. In order to be considered the same species, organisms must be able to interbreed and produce fertile offspring. -selective breeding- method of improving a species by choosing animals or plants that have desirable characteristics to produce offspring with those desirable traits. -England's Peppered Moths- An Example of Natural Selection -Excellent example of natural selection in action. -The peppered moth spends much of the daytime resting on the bark of oak trees. In the early th 19 Century most of the oak trees in England were light brown speckled with green, and most of the peppered moths were of the same coloration. There were also a few dark colored moths, but not very many. -When the industrial revolution began in England, pollution (mostly soot from burning coal) turned the tree trunks dark brown. At about the same time biologists noticed that more and more moths of dark coloration were appearing. 24 EOC Review 08-09 -Reason for the change: natural selection. The moths served as food for the birds. When a moth had the same coloration as the tree trunk it was much harder for the bird to see, and thus much less likely to be eaten and much more likely to survive. Antibiotic resistant bacteria Some bacteria possess a mutation that makes them resistant to certain antibiotics. When the population of bacteria is exposed to antibiotics most of them will die, but those with the mutation will survive. When they reproduce they are likely to pass the mutation on to their offspring. Eventually there is a population of antibiotic resistant bacteria. Pesticide resistant insects Same situation as antibiotic resistant bacteria. -adaptation - process that allows organisms to become better adapted to their environments, or a trait of an organism that helps it survive in its environment. -convergent evolution is a process in which species that are not closely related, but live in similar environments evolve similar traits. (Ex; Dolphins are mammals, not related to fish, but they have a streamlined body shape like that of a fish.) 25