Tutorial: chloroplast genomes - DOGMA: Annotation of Chloroplast
... 3. Create a userid. DOGMA is case-sensitive, and userids should not have any spaces or punctuation in them. 4. Create a password. DOGMA is case-sensitive, and password should not have any spaces or punctuation in them. This site does not use encryption so do not use an important password. 5. Enter y ...
... 3. Create a userid. DOGMA is case-sensitive, and userids should not have any spaces or punctuation in them. 4. Create a password. DOGMA is case-sensitive, and password should not have any spaces or punctuation in them. This site does not use encryption so do not use an important password. 5. Enter y ...
Study of seven single-nucleotide polymorphisms identified in East
... risk of chronic diseases, including type 2 diabetes mellitus, cardiovascular diseases, metabolic syndrome and cancer.1 The proposed cut-off points of body mass index (BMI) for obesity are defined differently by Taiwan and the WHO. The Ministry of Health and Welfare in Taiwan has defined obesity as a B ...
... risk of chronic diseases, including type 2 diabetes mellitus, cardiovascular diseases, metabolic syndrome and cancer.1 The proposed cut-off points of body mass index (BMI) for obesity are defined differently by Taiwan and the WHO. The Ministry of Health and Welfare in Taiwan has defined obesity as a B ...
The Effect of a Coat Colour-Associated Genes Polymorphism on
... are deaf (Hauswirth et al., 2012, 2013). Two mutations were identified that condition the splashed-white phenotype: MITFprom1 (g.20,117,302Tdelins11) and MITFC280Sfs*20 (g.20,105,348_52del5; c.837_842delGTGTC). The third mutation MITFN310S (g.20,103,081T>C; c.209G>A) determines macchiato phenotype i ...
... are deaf (Hauswirth et al., 2012, 2013). Two mutations were identified that condition the splashed-white phenotype: MITFprom1 (g.20,117,302Tdelins11) and MITFC280Sfs*20 (g.20,105,348_52del5; c.837_842delGTGTC). The third mutation MITFN310S (g.20,103,081T>C; c.209G>A) determines macchiato phenotype i ...
2005-05_Purdue_edimmer
... Evaluation of precision of annotation electronic techniques (InterPro2GO, SPKW2GO, EC2GO) • Compared manually-curated test set of GO annotated proteins with the electronic annotations • InterPro2GO = most coverage • EC2GO = 67 % of predictions exactly match the manual GO annotation. • 91-100 % of t ...
... Evaluation of precision of annotation electronic techniques (InterPro2GO, SPKW2GO, EC2GO) • Compared manually-curated test set of GO annotated proteins with the electronic annotations • InterPro2GO = most coverage • EC2GO = 67 % of predictions exactly match the manual GO annotation. • 91-100 % of t ...
Tweak to molecular scissors cuts path to turn on genes —
... whether the small segments had any widespread purpose. The new study confirms microexons’ importance, suggesting that these tiny sequences can have big effects on brain development. “It’s really a new landscape of regulation that’s associated with a disorder,” says Blencowe. “We have a big challenge ...
... whether the small segments had any widespread purpose. The new study confirms microexons’ importance, suggesting that these tiny sequences can have big effects on brain development. “It’s really a new landscape of regulation that’s associated with a disorder,” says Blencowe. “We have a big challenge ...
grappa - Department of Computer Science
... random events (based upon 120 genes and inversion only, but robust to errors in the model) . – Polynomial time, fastest of the three. ...
... random events (based upon 120 genes and inversion only, but robust to errors in the model) . – Polynomial time, fastest of the three. ...
From Gene to Carcinogen: A Rapidly Evolving Field in
... mately termed "spontaneous." The frequency of transitions at CpG locations thus appears to give a measure of the rate of endogenous mutations in a particular gene. A lessening of the proportion of mutations occurring at CpGs (specifically, CpG to TpG or CpA transitions) would be indicative that a ch ...
... mately termed "spontaneous." The frequency of transitions at CpG locations thus appears to give a measure of the rate of endogenous mutations in a particular gene. A lessening of the proportion of mutations occurring at CpGs (specifically, CpG to TpG or CpA transitions) would be indicative that a ch ...
Leukaemia Section t(1;3)(p36;q21) Atlas of Genetics and Cytogenetics in Oncology and Haematology
... Cornillet-Lefebvre P, Daliphard S, Struski S. t(1;3)(p36;q21). Atlas Genet Cytogenet Oncol Haematol.2001;5(1):29-30. Huret JL. t(1;3)(p36;q21). Atlas Genet Cytogenet Oncol Haematol.1997;1(1):16. This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 2.0 France L ...
... Cornillet-Lefebvre P, Daliphard S, Struski S. t(1;3)(p36;q21). Atlas Genet Cytogenet Oncol Haematol.2001;5(1):29-30. Huret JL. t(1;3)(p36;q21). Atlas Genet Cytogenet Oncol Haematol.1997;1(1):16. This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 2.0 France L ...
Structure and evolution of plant disease resistance genes
... Detection of positive selection often depends on considering only those sites predicted to be important in recognition. Evidence of adaptive selection is rare, but appears to be most common in gene regions encoding surface antigens of parasites or viruses (ENDO et al. 1996). It is expected that frag ...
... Detection of positive selection often depends on considering only those sites predicted to be important in recognition. Evidence of adaptive selection is rare, but appears to be most common in gene regions encoding surface antigens of parasites or viruses (ENDO et al. 1996). It is expected that frag ...
BIOL100 Laboratory Assignment 5: Genetics Name: Part A: Genes
... instance, the different alleles of the gene for finger hair might be written as an “H” for the allele that leads to finger hair and as an “h” for the no finger hair allele. Capital letters are usually assigned to an allele that is dominant. Being a dominant allele means that if a person carries ...
... instance, the different alleles of the gene for finger hair might be written as an “H” for the allele that leads to finger hair and as an “h” for the no finger hair allele. Capital letters are usually assigned to an allele that is dominant. Being a dominant allele means that if a person carries ...
Driscoll Katee Driscoll Dr. Ely Genetics October 20, 2013 Effects of
... samples that comprised the other set) (Lee et al. 2013). When the model was run, it was found to predict CAG repeat lengths with a variance of 21%, which shows that the gene expression variance can be correlated to the size of the polymorphism (Lee et al. 2103). Following these results, the model wa ...
... samples that comprised the other set) (Lee et al. 2013). When the model was run, it was found to predict CAG repeat lengths with a variance of 21%, which shows that the gene expression variance can be correlated to the size of the polymorphism (Lee et al. 2103). Following these results, the model wa ...
Analysis of mutant strains
... media, can be tailored to support or select against the growth of particular genotypes. In this course, we will use Yeast Complete (YC) medium that supports the growth of most S. cerevisiae strains. The growth rate of wild type strains in YC is somewhat slower than that in rich media like YPD, but t ...
... media, can be tailored to support or select against the growth of particular genotypes. In this course, we will use Yeast Complete (YC) medium that supports the growth of most S. cerevisiae strains. The growth rate of wild type strains in YC is somewhat slower than that in rich media like YPD, but t ...
Varieties of Mugineic Acid Family Phytosiderophores Secreted from
... Graminaceous plants utilize mugineic acid family phytosiderophores (MAs) in Fe acquisition from the soils and Fe translocation inside the body. Furthermore, MAs are significant for seed maturation as well as Fe homeostasis in graminaceous plants. Foxtail millet (Setaria italica) is the second-most w ...
... Graminaceous plants utilize mugineic acid family phytosiderophores (MAs) in Fe acquisition from the soils and Fe translocation inside the body. Furthermore, MAs are significant for seed maturation as well as Fe homeostasis in graminaceous plants. Foxtail millet (Setaria italica) is the second-most w ...
Distinct Contributions of Replication and Transcription to Mutation
... mutation rate variation in human genomes. Based on analysis of the public human tissue transcriptomics data, high-resolution replicating map of Hela cells and dbSNP data, we present significant correlations between expression breadth, replication time in local regions and SNP density. SNP density of ...
... mutation rate variation in human genomes. Based on analysis of the public human tissue transcriptomics data, high-resolution replicating map of Hela cells and dbSNP data, we present significant correlations between expression breadth, replication time in local regions and SNP density. SNP density of ...
Module 8: Horizontal Gene Transfer
... show an ancestral lineage. An unrooted person's family tree would show clusters of blood relatives, but would not show who was ancestor or progeny in those clusters. The T-Coffee website that you have already used in the Sequence Based Similarity Module allows for the construction of basic cladogram ...
... show an ancestral lineage. An unrooted person's family tree would show clusters of blood relatives, but would not show who was ancestor or progeny in those clusters. The T-Coffee website that you have already used in the Sequence Based Similarity Module allows for the construction of basic cladogram ...
Conditions for gene disruption by homologous
... cells reached an OD600nm of about 0.4 after 7 to 14 days. Subsequently, cells were spread on lactose and tryptone plates and sprayed with 5 mg ml –1 X-gal after 7 days of growth. As shown in Table 1, in only two of the tested conditions were blue colonies obtained, indicating the presence of lacS in ...
... cells reached an OD600nm of about 0.4 after 7 to 14 days. Subsequently, cells were spread on lactose and tryptone plates and sprayed with 5 mg ml –1 X-gal after 7 days of growth. As shown in Table 1, in only two of the tested conditions were blue colonies obtained, indicating the presence of lacS in ...
Question paper - Unit F225/01 - Genetics, control and ageing
... the sunflowers came into bloom. This coincided with the use of a new neonicotinoid insecticide to treat sunflower seeds. Honey production in France fell from 110 000 tonnes in 1996 to 50 000 tonnes in 1999. The National Union of French Beekeepers reported that a third of the country’s honey bee colo ...
... the sunflowers came into bloom. This coincided with the use of a new neonicotinoid insecticide to treat sunflower seeds. Honey production in France fell from 110 000 tonnes in 1996 to 50 000 tonnes in 1999. The National Union of French Beekeepers reported that a third of the country’s honey bee colo ...
CHARACTERIZATION OF MOCR, A GNTR TRANSCRIPTIONAL
... 1. Rise soybean crop value in the U.S. from 1985 – 2010, USDA (2011). ..................................... 1 2. Satellite image depicting effects of eutrophication of the northern Gulf of Mexico/Mississippi Delta, showing hypoxic coastal water, January 2003. (B) Monthly U.S. prices of natural gas a ...
... 1. Rise soybean crop value in the U.S. from 1985 – 2010, USDA (2011). ..................................... 1 2. Satellite image depicting effects of eutrophication of the northern Gulf of Mexico/Mississippi Delta, showing hypoxic coastal water, January 2003. (B) Monthly U.S. prices of natural gas a ...
Genome-Wide Scan of Obesity in the Old Order Amish*
... Segregation analyses suggest that single genes with relatively large effects as well as polygenes with smaller effects contribute to the development of obesity. Studies in several populations suggest that major genes inherited in a recessive manner may account for 35– 45% of the variation in obesity ...
... Segregation analyses suggest that single genes with relatively large effects as well as polygenes with smaller effects contribute to the development of obesity. Studies in several populations suggest that major genes inherited in a recessive manner may account for 35– 45% of the variation in obesity ...
Gold nanoparticle-mediated gene delivery induces immunity genes
... These inducible gene products regulate the sensitivity and intensity of the innate immune response to infection and injury. Though oligonucleotide-modified gold nanoparticle conjugates are purportedly nontoxic for lineage-specific cell types, their effects on signaling pathways that respond to activ ...
... These inducible gene products regulate the sensitivity and intensity of the innate immune response to infection and injury. Though oligonucleotide-modified gold nanoparticle conjugates are purportedly nontoxic for lineage-specific cell types, their effects on signaling pathways that respond to activ ...
Letter to the Editor
... of recombination, and hence the probability that the toxin and anti-toxin genes would come into linkage disequilibrium is higher than in chromosomal domains with free recombination. It is thus significant that scat is very close to the centromere on chromosome 8. The above models describe two loci, ...
... of recombination, and hence the probability that the toxin and anti-toxin genes would come into linkage disequilibrium is higher than in chromosomal domains with free recombination. It is thus significant that scat is very close to the centromere on chromosome 8. The above models describe two loci, ...
Time-shift and inverse clustering of expression data finds new
... At the end of this procedure, one obtains a match score and a relationship, i.e., "simultaneous," "time-delayed," "inverted," or "inverted time-delayed". Obviously, for the gene pairs with a very low match score, even though they are also assigned a relationship, we can classify them as “unmatched”. ...
... At the end of this procedure, one obtains a match score and a relationship, i.e., "simultaneous," "time-delayed," "inverted," or "inverted time-delayed". Obviously, for the gene pairs with a very low match score, even though they are also assigned a relationship, we can classify them as “unmatched”. ...
Interview Notes on Donor 2422 - The Sperm Bank of California
... I was impressed by how much Donor 2602 genuinely loves and appreciates his family. His father took the entire family to France for his sabbatical year when the donor was ten, and the donor commented that he and his siblings had had a great experience attending French school together. He spoke enthus ...
... I was impressed by how much Donor 2602 genuinely loves and appreciates his family. His father took the entire family to France for his sabbatical year when the donor was ten, and the donor commented that he and his siblings had had a great experience attending French school together. He spoke enthus ...