Ding, Yi : Singular Value Decomposition applied to the building of class predictor
... expression data on a genomic scale (Spellman et. al 1998, Eisen et. al 1998, Golub et. al 1999). The outputs of the experiments are expression profiles either sampled at different times or from different sources (patients belonging to different phenotype). This has a profound impact on the study of ...
... expression data on a genomic scale (Spellman et. al 1998, Eisen et. al 1998, Golub et. al 1999). The outputs of the experiments are expression profiles either sampled at different times or from different sources (patients belonging to different phenotype). This has a profound impact on the study of ...
Patterns of gene duplication and sex chromosomes evolution
... original pattern of expression) • Genes should keep original function (i.e. be under quite strong purifying selection) • Genes will transcribe during X inactivation and mutations will cause sterility ...
... original pattern of expression) • Genes should keep original function (i.e. be under quite strong purifying selection) • Genes will transcribe during X inactivation and mutations will cause sterility ...
Imprinted gene detection in Arabidopsis thaliana
... incrementally moves the nodes in feature space so that their post-training positions tend to approximate a manifold that is representative of the training data, and so that iff two nodes are adjacent on the map, their Voronoi cells tend to be adjacent. Intuitively, this means that after training, th ...
... incrementally moves the nodes in feature space so that their post-training positions tend to approximate a manifold that is representative of the training data, and so that iff two nodes are adjacent on the map, their Voronoi cells tend to be adjacent. Intuitively, this means that after training, th ...
Regulatory Network Control of Blood Stem Cells
... proteins and the gene regulatory DNA sequences that they bind to 1. By binding to specific DNA sequence motifs within gene regulatory regions, TF proteins are central players for this primary step of decoding gene regulatory instructions. TF proteins typically contain a number of distinct modules, s ...
... proteins and the gene regulatory DNA sequences that they bind to 1. By binding to specific DNA sequence motifs within gene regulatory regions, TF proteins are central players for this primary step of decoding gene regulatory instructions. TF proteins typically contain a number of distinct modules, s ...
Relationship of Gene Expression and Chromosomal Abnormalities in Colorectal Cancer
... functional consequence of recurrent abnormalities is not always apparent, because a change in DNA copy number does not necessarily induce actual alterations in expression (4). The issue is further complicated by the observation that many aberrations span large chromosomal regions that contain multip ...
... functional consequence of recurrent abnormalities is not always apparent, because a change in DNA copy number does not necessarily induce actual alterations in expression (4). The issue is further complicated by the observation that many aberrations span large chromosomal regions that contain multip ...
The Diabetes-Prone BB Rat Carries a Frameshift Mutation in Ian4, a
... Because only one of the genes has been characterized (LR8; a gene expressed by lung fibroblasts) (23), we searched the GenBank for similarity to known genes. Five genes (LOC136361, LOC136362, LOC136364, Hs7_7861_27_13_2, and Hs7_7861_27_18_1) exhibit no similarity to any known gene. The protein enco ...
... Because only one of the genes has been characterized (LR8; a gene expressed by lung fibroblasts) (23), we searched the GenBank for similarity to known genes. Five genes (LOC136361, LOC136362, LOC136364, Hs7_7861_27_13_2, and Hs7_7861_27_18_1) exhibit no similarity to any known gene. The protein enco ...
lecture notes
... occur during the movement of the nuclei to the periphery. An hour after fertilization the embryo is composed of about 800 nuclei forming a monolayer around the periphery of the egg. During the next 30 min the nuclei undergo another 3 rounds of division to form nuclear cleavage cycle 14 embryos conta ...
... occur during the movement of the nuclei to the periphery. An hour after fertilization the embryo is composed of about 800 nuclei forming a monolayer around the periphery of the egg. During the next 30 min the nuclei undergo another 3 rounds of division to form nuclear cleavage cycle 14 embryos conta ...
to get the file - Chair of Computational Biology
... would take just a few hours rather than one day. To maintain the daily oscillations of clock proteins, a significant delay between the activation and repression of transcription is required. This is ensured by regulation through post-translational modifications. ...
... would take just a few hours rather than one day. To maintain the daily oscillations of clock proteins, a significant delay between the activation and repression of transcription is required. This is ensured by regulation through post-translational modifications. ...
Leveraging additional knowledge to support coherent bicluster
... conditions. Biclustering has been proved to be useful for revealing potential transcriptional modules, i.e., subsets of co-expressed — and thus co-regulated — genes and of experimental conditions presenting this co-regulation [19]. Even though applying traditional cluster analysis on genes first and ...
... conditions. Biclustering has been proved to be useful for revealing potential transcriptional modules, i.e., subsets of co-expressed — and thus co-regulated — genes and of experimental conditions presenting this co-regulation [19]. Even though applying traditional cluster analysis on genes first and ...
Plant Physiology and Biochemistry
... cor78, and lti78 genes are differentially induced under conditions of dehydration, cold, salt, and exogenous ABA. Dehydration responsive element (DRE: TACCGACAT) functions in the initial rapid response of rd29A to dehydration, salt, and low temperature [32,33]. The DRE is an essential cis-acting ele ...
... cor78, and lti78 genes are differentially induced under conditions of dehydration, cold, salt, and exogenous ABA. Dehydration responsive element (DRE: TACCGACAT) functions in the initial rapid response of rd29A to dehydration, salt, and low temperature [32,33]. The DRE is an essential cis-acting ele ...
Calmodulin-binding protein phosphatase PP7 is involved in
... sequence is available to date only for A. thaliana, but partial sequences from some other plant species, including maize, rice, etc., indicate that PP7 may be present throughout the plant kingdom (Andreeva et al. 1997, 1998; Andreeva & Kutuzov 1999). Arabidopsis thaliana PP7 (AtPP7) possesses a CaM- ...
... sequence is available to date only for A. thaliana, but partial sequences from some other plant species, including maize, rice, etc., indicate that PP7 may be present throughout the plant kingdom (Andreeva et al. 1997, 1998; Andreeva & Kutuzov 1999). Arabidopsis thaliana PP7 (AtPP7) possesses a CaM- ...
TRANSPOSABLE GENETIC ELEMENTS
... B. Transposable elements in eukaryotes are of two types: those that have DNA as their genetic material, and those that have RNA as their genetic material. 1. DNA transposable elements are exemplified by the P elements in Drosophila. a) P elements were discovered when it was found that certain strain ...
... B. Transposable elements in eukaryotes are of two types: those that have DNA as their genetic material, and those that have RNA as their genetic material. 1. DNA transposable elements are exemplified by the P elements in Drosophila. a) P elements were discovered when it was found that certain strain ...
Gene Section IGL (Immunoglobulin Lambda) Atlas of Genetics and Cytogenetics
... been shown to characterize IGLC haplotypes with 8, 9, 10 or 11 genes, but these genes have not yet been sequenced. Two IGLV orphons have been identified on chromosome 8 at 8q11.2 and one of them belonging to subgroup 8 has been sequenced. The recent sequencing of the chromosome 22q showed that the I ...
... been shown to characterize IGLC haplotypes with 8, 9, 10 or 11 genes, but these genes have not yet been sequenced. Two IGLV orphons have been identified on chromosome 8 at 8q11.2 and one of them belonging to subgroup 8 has been sequenced. The recent sequencing of the chromosome 22q showed that the I ...
On intrapersonal reciprocity
... would favor withholding the benefit from Maddy if B < 2C and both sets of genes would favor conferring the benefit if this directly benefited Bob (C < 0). Specific prediction of outcomes within the zone of conflict defined by B > 2C > 0 require assumptions about the mode of gene action and the relat ...
... would favor withholding the benefit from Maddy if B < 2C and both sets of genes would favor conferring the benefit if this directly benefited Bob (C < 0). Specific prediction of outcomes within the zone of conflict defined by B > 2C > 0 require assumptions about the mode of gene action and the relat ...
Biology 1060 Chapter 17 - College of Southern Maryland
... Describe the three stages of transcription Discuss the factors important in RNA polymerase binding and initiation of transcription Discuss how the cell increases the efficiency of transcription to mRNA Describe termination in prokaryotes and eukaryotes ...
... Describe the three stages of transcription Discuss the factors important in RNA polymerase binding and initiation of transcription Discuss how the cell increases the efficiency of transcription to mRNA Describe termination in prokaryotes and eukaryotes ...
Missing Value Estimation for Gene Expression Profile Data
... Scholz et al. pointed out that the key of MV estimation is to find a relationship between genes[7] , based on which, a lot of methods have been developed which can be classified into two categories, i.e., global strategy and local strategy[8] . An assumption for the global strategy is that, all genes ...
... Scholz et al. pointed out that the key of MV estimation is to find a relationship between genes[7] , based on which, a lot of methods have been developed which can be classified into two categories, i.e., global strategy and local strategy[8] . An assumption for the global strategy is that, all genes ...
Marker Gene Technologies, Inc
... The neomycin resistance gene can be cloned into the pNosdcGUS vector to allow selection of stable cell lines. If you wish to create stable cell lines, transfect your construct into the plant cell line of choice and select for foci using Geneticin®. General guidelines are provided below. To obtain st ...
... The neomycin resistance gene can be cloned into the pNosdcGUS vector to allow selection of stable cell lines. If you wish to create stable cell lines, transfect your construct into the plant cell line of choice and select for foci using Geneticin®. General guidelines are provided below. To obtain st ...
A1993LB48800002
... naming of new genes and nomenclature of chromosomal loci. DNA 8:1-13, 1989. (Cited 550 times.) 3. Nebert D W, Nelson D R, Coon M J, Estabrook R W, Feyereisen R, Fujii-Kuriyama Y, Gonzalez F J, Guengerich F P, Gunsalus I C, Johnson E F, Loper J C, Sato R, Waterman M R & Waxman D J. The P450 superfami ...
... naming of new genes and nomenclature of chromosomal loci. DNA 8:1-13, 1989. (Cited 550 times.) 3. Nebert D W, Nelson D R, Coon M J, Estabrook R W, Feyereisen R, Fujii-Kuriyama Y, Gonzalez F J, Guengerich F P, Gunsalus I C, Johnson E F, Loper J C, Sato R, Waterman M R & Waxman D J. The P450 superfami ...
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... lane 7). These results suggest that VIPR-RP inhibits TFIIB assembly into the PIC and that the VIPR-RP–TFIIB interactive domain is required for this function. ...
... lane 7). These results suggest that VIPR-RP inhibits TFIIB assembly into the PIC and that the VIPR-RP–TFIIB interactive domain is required for this function. ...
DmTTF, a novel mitochondrial transcription termination factor that
... termination factor. FlyBase GadFly Genome Annotation Database reports that the DmTTF gene is 1587 bp long; it is composed of three exons and two introns and generates a transcript of 1468 nt. The cDNA of DmTTF was cloned by means of PCR on a cDNA library of D.melanogaster. The sequence of the ORF (a ...
... termination factor. FlyBase GadFly Genome Annotation Database reports that the DmTTF gene is 1587 bp long; it is composed of three exons and two introns and generates a transcript of 1468 nt. The cDNA of DmTTF was cloned by means of PCR on a cDNA library of D.melanogaster. The sequence of the ORF (a ...