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Tutorial 3 (Ans Scheme) ERT 317, Sem 1 2015/2016
Tutorial 3 (Ans Scheme) ERT 317, Sem 1 2015/2016

... The enzyme phosphoglycerokinase transfers a P from 1,3-bisphosphoglycerate to a molecule of ADP to form ATP. This happens for each molecule of 1,3bisphosphoglycerate. The process yields two 3-phosphoglycerate molecules and two ATP molecules. 2 molecules of 1,3-bisphoshoglycerate (C3H4O4P2) + phospho ...
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Protein Modeling Challenge Science Olympiad Trial Event
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... Many of you may be familiar with RasMol. RasMol is a great program and may be continued to be used by Science Olympiad Teams. However, since there have not been updates to RasMol to allow for it to operate easily on Macs, Jmol will be the computer visualization program to be used in the future. The ...
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PowerPoint Lectures - Northwest ISD Moodle

... they are oxidized (how easily they lose electrons) • Activity series – list of metals arranged in order of decreasing ease of oxidation - Allows us to predict whether a metal will be oxidized or not • Any neutral metal (or hydrogen) on the list can be oxidized by the ions of elements below it • That ...
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Computer simulation study of the diffusion of water molecules

... like slit [1,2], cylindrical [2,3] and spherical [4,5]. However, more sophisticated models with an atomistically described interaction between water molecules and substrate have been studied as well [6–8]. The model of Vycor glass confining water molecules proposed by Rovere et al. [7] and utilized ...
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What is an Enzyme? How Do Enzymes Work? Chemistry of Life

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2015 Academic Challenge CHEMISTRY TEST – STATE

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Mean-field minimization methods for biological macromolecules

... adopted by a macromolecule (nucleic acid or protein) in vivo. The search for this global minimum is hindered by the existence of multiple minima on the conformational energy surface [1]. It is easy to find the local minimum associated with a given conformation, but very hard to escape from this mini ...
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Introduction_to_Chemical_Reactions_2011

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Chapter 3 - Whitwell High School
Chapter 3 - Whitwell High School

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Principles of immunological Techniques

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Chem 206 Exam 2 Answers
Chem 206 Exam 2 Answers

... d) After equilibrium is obtained, you add a catalyst and 3.00 additional moles of HCl. What will happen? <8 pts.> The addition of a catalyst will not change the equilibrium but will only increase the rate at which equilibrium will be obtained. The addition of HCl will cause the reaction to go to the ...
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... Catalyst are the substance that accelerate chemical reaction Organic catalyst (enzyme) 2 Mg,2 Cl-) Inorganic catalyst(Zn, Enzymes are proteins that catalyze (i.e., increase the rates of) chemical reactions  Nearly all known enzymes are proteins in nature with the exception of certain RNA molecu ...
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Multi-state modeling of biomolecules

Multi-state modeling of biomolecules refers to a series of techniques used to represent and compute the behaviour of biological molecules or complexes that can adopt a large number of possible functional states.Biological signaling systems often rely on complexes of biological macromolecules that can undergo several functionally significant modifications that are mutually compatible. Thus, they can exist in a very large number of functionally different states. Modeling such multi-state systems poses two problems: The problem of how to describe and specify a multi-state system (the ""specification problem"") and the problem of how to use a computer to simulate the progress of the system over time (the ""computation problem""). To address the specification problem, modelers have in recent years moved away from explicit specification of all possible states, and towards rule-based formalisms that allow for implicit model specification, including the κ-calculus, BioNetGen, the Allosteric Network Compiler and others. To tackle the computation problem, they have turned to particle-based methods that have in many cases proved more computationally efficient than population-based methods based on ordinary differential equations, partial differential equations, or the Gillespie stochastic simulation algorithm. Given current computing technology, particle-based methods are sometimes the only possible option. Particle-based simulators further fall into two categories: Non-spatial simulators such as StochSim, DYNSTOC, RuleMonkey, and NFSim and spatial simulators, including Meredys, SRSim and MCell. Modelers can thus choose from a variety of tools; the best choice depending on the particular problem. Development of faster and more powerful methods is ongoing, promising the ability to simulate ever more complex signaling processes in the future.
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