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... The rust diseases which include leaf rust caused by Puccinia triticina Eriks., stem rust caused by Puccinia graminis Pers. f. sp. tritici and stripe rust caused by Puccinia striiformis West. f. sp. tritici. are the major biotic stresses that affect the global wheat production. Although several rust ...
... The rust diseases which include leaf rust caused by Puccinia triticina Eriks., stem rust caused by Puccinia graminis Pers. f. sp. tritici and stripe rust caused by Puccinia striiformis West. f. sp. tritici. are the major biotic stresses that affect the global wheat production. Although several rust ...
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... frequency from 17.4% to 78.2% (P = 0.00011), which is significantly higher (P = 0.00665) than that achieved with the Zfy1 transgene (47.2%). Thus the Zfy2 transgene promotes meiosis II more effectively than the Zfy1 transgene. Both transgenes are single copy and inserted on the X chromosome, but we ...
... frequency from 17.4% to 78.2% (P = 0.00011), which is significantly higher (P = 0.00665) than that achieved with the Zfy1 transgene (47.2%). Thus the Zfy2 transgene promotes meiosis II more effectively than the Zfy1 transgene. Both transgenes are single copy and inserted on the X chromosome, but we ...
MALE STERILITY - public.iastate.edu
... 3. Most revertants show that T-urf13 is deleted from mitochondrial genome by recombination, resulting in a simultaneous loss of cms and disease susceptibility; some revertants due to mutations (frameshift mutation or premature stop codon) in T-urf13 that make non-functional URF13 protein. These data ...
... 3. Most revertants show that T-urf13 is deleted from mitochondrial genome by recombination, resulting in a simultaneous loss of cms and disease susceptibility; some revertants due to mutations (frameshift mutation or premature stop codon) in T-urf13 that make non-functional URF13 protein. These data ...
- Opus: Online Publications Store
... incomplete, since these only show pC,U becomes smaller due to a greatly increased mutational and recombinational robustness, leaving it still unclear whether or not recombination is able to retain sexual lineages in C, since pC,F and pF,C are largely unknown. Here we report the discovery of a new po ...
... incomplete, since these only show pC,U becomes smaller due to a greatly increased mutational and recombinational robustness, leaving it still unclear whether or not recombination is able to retain sexual lineages in C, since pC,F and pF,C are largely unknown. Here we report the discovery of a new po ...
HiPer® Bacterial Conjugation Teaching Kit
... elements. The factors (plasmids) contain about 20-30 genes, most of which are associated with conjugation. These genes encode enzymes that replicate DNA during conjugation and structural proteins needed to synthesize special pili at the cell surface. Known as F pili or sex pili, these hairlike fibre ...
... elements. The factors (plasmids) contain about 20-30 genes, most of which are associated with conjugation. These genes encode enzymes that replicate DNA during conjugation and structural proteins needed to synthesize special pili at the cell surface. Known as F pili or sex pili, these hairlike fibre ...
RNA-Seq analysis
... The resulting sequence reads are aligned with the reference genome or transcriptome and classified as three types: exonic reads, junction reads and poly(A) end-reads. (de novo assembly also possible => attractive for non-model organisms) RNA-Seq analysis ...
... The resulting sequence reads are aligned with the reference genome or transcriptome and classified as three types: exonic reads, junction reads and poly(A) end-reads. (de novo assembly also possible => attractive for non-model organisms) RNA-Seq analysis ...
A novel DNA modification by sulphur
... DNA modification associated with the Dnd phenotype is governed by the dnd locus ZX1, a dnd– mutant of S. lividans 66, has an approximately 90 kb chromosomal deletion (Zhou et al., 2004) that includes the putative DNA modification (dnd) gene(s). The dnd locus was mapped to one (16C3) of a set of 13 o ...
... DNA modification associated with the Dnd phenotype is governed by the dnd locus ZX1, a dnd– mutant of S. lividans 66, has an approximately 90 kb chromosomal deletion (Zhou et al., 2004) that includes the putative DNA modification (dnd) gene(s). The dnd locus was mapped to one (16C3) of a set of 13 o ...
Nature Genetics: doi:10.1038/ng.3791
... overlapping 26 bp reads). These shortened reads were mapped to the dm3 reference genome and the number of reads starting at each position was counted for each line. From this alignment map, a Universal Mappability Map (UMM) was created by considering genomic positions for which each DGRP line contai ...
... overlapping 26 bp reads). These shortened reads were mapped to the dm3 reference genome and the number of reads starting at each position was counted for each line. From this alignment map, a Universal Mappability Map (UMM) was created by considering genomic positions for which each DGRP line contai ...
Pre-invasion history and demography shape the genetic variation in
... Genetic variability in a given gene is the result of a complex interplay of evolutionary forces such as selection, mutation rate and recombination, and demographic history of the populations including changes in population size, migration and divergence [1]. The evolution of insecticide resistance i ...
... Genetic variability in a given gene is the result of a complex interplay of evolutionary forces such as selection, mutation rate and recombination, and demographic history of the populations including changes in population size, migration and divergence [1]. The evolution of insecticide resistance i ...
manual - Cedar Crest College
... 4. The treatment of nonrandom mating has been extended. In previous versions, nonrandom mating was simulated by first randomly choosing a pair of individuals to mate, then determining if the mating was ...
... 4. The treatment of nonrandom mating has been extended. In previous versions, nonrandom mating was simulated by first randomly choosing a pair of individuals to mate, then determining if the mating was ...
Clustering of mandibular organ-inhibiting hormone and moult
... MIH genes clustered within 6.5 kb. The other type contains only the MO-IH-2 gene, which is not closely linked to an MIH gene. There are three exons and two introns in all MIH and MO-IH genes analysed. The exon–intron boundary of the crab MIH and MO-IH genes follows Chambon’s rule (GT–AG) for the spl ...
... MIH genes clustered within 6.5 kb. The other type contains only the MO-IH-2 gene, which is not closely linked to an MIH gene. There are three exons and two introns in all MIH and MO-IH genes analysed. The exon–intron boundary of the crab MIH and MO-IH genes follows Chambon’s rule (GT–AG) for the spl ...
Transcriptome analysis of the two unrelated fungal
... Penicillium chrysogenum, two taxonomically unrelated fungi. Both were subjects of long-term strain development programs to reach economically relevant antibiotic titers. It is so far unknown, whether equivalent changes in gene expression lead to elevated antibiotic titers in production strains. Resu ...
... Penicillium chrysogenum, two taxonomically unrelated fungi. Both were subjects of long-term strain development programs to reach economically relevant antibiotic titers. It is so far unknown, whether equivalent changes in gene expression lead to elevated antibiotic titers in production strains. Resu ...
Uria_et_al_2006 _ADH paper
... reduced application of organic solvents (Julich Chiral Solutions-Germany, http://www.julich.com/). In addition, enzymes (including ADH) can be immobilized and reused for many enzymatic cycles, and they can be over-produced to make catalytic processes more economically efficient (Patel, 2004). This t ...
... reduced application of organic solvents (Julich Chiral Solutions-Germany, http://www.julich.com/). In addition, enzymes (including ADH) can be immobilized and reused for many enzymatic cycles, and they can be over-produced to make catalytic processes more economically efficient (Patel, 2004). This t ...
Splice Site Prediction Using Artificial Neural Networks
... The task is to predict splice sites, thus the desired output is 1.0 when a splice site is in the middle of the sliding window. There are two outputs from the neural network: One for indicating acceptor splice site and one for indicating donor splice site. However, if it is only a 1.0 output when a s ...
... The task is to predict splice sites, thus the desired output is 1.0 when a splice site is in the middle of the sliding window. There are two outputs from the neural network: One for indicating acceptor splice site and one for indicating donor splice site. However, if it is only a 1.0 output when a s ...
Exome sequencing as a tool for Mendelian disease gene discovery
... nonsense single-base substitutions or small insertion– deletions (that is, indels), are predicted to have functional consequences and/or to be deleterious14. As such, the exome represents a highly enriched subset of the genome in which to search for variants with large effect sizes. Defining the exo ...
... nonsense single-base substitutions or small insertion– deletions (that is, indels), are predicted to have functional consequences and/or to be deleterious14. As such, the exome represents a highly enriched subset of the genome in which to search for variants with large effect sizes. Defining the exo ...
Three-letter Symbols - Online Open Genetics
... Sometimes a letter is used as the name of a gene, and superscripts can modify it to indicate the different alleles. One common single letter code for an allelic series is “I". Red blood cells can have their cell membranes modified by sugar tags that give rise to our blood type. One allele of I gives ...
... Sometimes a letter is used as the name of a gene, and superscripts can modify it to indicate the different alleles. One common single letter code for an allelic series is “I". Red blood cells can have their cell membranes modified by sugar tags that give rise to our blood type. One allele of I gives ...
Human Genetic Revolution
... • Linear regression assures an ML estimate only if the noise process is normally distributed and uncorrelated with the dependent variable • Squared difference D2 does not necessarily follow • Standard error and distribution of test statistic are based on normal, uncorrelated error; thus, t-test deri ...
... • Linear regression assures an ML estimate only if the noise process is normally distributed and uncorrelated with the dependent variable • Squared difference D2 does not necessarily follow • Standard error and distribution of test statistic are based on normal, uncorrelated error; thus, t-test deri ...
rpoB gene sequence-based characterization of emerging non
... hypervariable region of the rpoB gene are available as supplementary material in IJSEM Online. ...
... hypervariable region of the rpoB gene are available as supplementary material in IJSEM Online. ...
Analysis of genetic structure in Slovak Pinzgau cattle using five
... ARORA et al., 2010). Analysis of milk proteins polymorphism provides useful information to both the breeders and processors of milk. Many research reports have indicated that certain milk protein variants may be associated with milk production, milk composition (ROBITAILLE et al., 2002) and cheese p ...
... ARORA et al., 2010). Analysis of milk proteins polymorphism provides useful information to both the breeders and processors of milk. Many research reports have indicated that certain milk protein variants may be associated with milk production, milk composition (ROBITAILLE et al., 2002) and cheese p ...
Genetic Diversity of Rhizobium leguminosarum as Revealed
... Al-Dakahlia) formed one group in addition to isolate from Beni Suef which is about 224 kilometer (Km) from Al-Dakahlia. On the other hand, the grouping pattern of the remaining isolates was rather puzzling. Isolates from Zefta and South Sinai formed one group with 100% bootstrap support although the ...
... Al-Dakahlia) formed one group in addition to isolate from Beni Suef which is about 224 kilometer (Km) from Al-Dakahlia. On the other hand, the grouping pattern of the remaining isolates was rather puzzling. Isolates from Zefta and South Sinai formed one group with 100% bootstrap support although the ...
Ectopic segmentation gene expression and
... anterior or posterior edges (Fig. 4,A.). The staining is neither segmental nor parasegmental, and both parasegments contribute to the fused metamere. Thus, the parasegmental deletions in heat-shocked HSF embryos are misleading. They do not reflect the loss of a parasegmental metamere, but rather its ...
... anterior or posterior edges (Fig. 4,A.). The staining is neither segmental nor parasegmental, and both parasegments contribute to the fused metamere. Thus, the parasegmental deletions in heat-shocked HSF embryos are misleading. They do not reflect the loss of a parasegmental metamere, but rather its ...
Figure 1000G Allele Frequencies
... S1. [11] had another rule for transcripts containing more than two 3’UTRs in the transcript. However, we observed that the stop codons in Ensembl gene annotation did not follow this particular rule, so we eliminated this rule and simply followed rule 2 if there was more than one 3’ UTR. c. Eukaryoti ...
... S1. [11] had another rule for transcripts containing more than two 3’UTRs in the transcript. However, we observed that the stop codons in Ensembl gene annotation did not follow this particular rule, so we eliminated this rule and simply followed rule 2 if there was more than one 3’ UTR. c. Eukaryoti ...
Introduction to Bioinformatics.
... on DNA sequences * Mutations arise in the germ-line of one single individual and eventually become fixed in the population * We observe fixed mutations as differences between individuals * Most fixed mutations are neutral: genetic drift * Some 80-90% of the non-neutral mutations are detrimental to t ...
... on DNA sequences * Mutations arise in the germ-line of one single individual and eventually become fixed in the population * We observe fixed mutations as differences between individuals * Most fixed mutations are neutral: genetic drift * Some 80-90% of the non-neutral mutations are detrimental to t ...
(ARG) as Compatible Networks of SNP Patterns
... The second is the phylogenetic model which is the inclusion of the recombination events in a mutation based phylogeny; the resulting topology is a directed acyclic graph (DAG), also called a phylogenetic network (Gusfield et al., 2007; Wu and Gusfield, 2007; Moret et al., 2004). We discuss one such ...
... The second is the phylogenetic model which is the inclusion of the recombination events in a mutation based phylogeny; the resulting topology is a directed acyclic graph (DAG), also called a phylogenetic network (Gusfield et al., 2007; Wu and Gusfield, 2007; Moret et al., 2004). We discuss one such ...
Genome evolution
Genome evolution is the process by which a genome changes in structure (sequence) or size over time. The study of genome evolution involves multiple fields such as structural analysis of the genome, the study of genomic parasites, gene and ancient genome duplications, polyploidy, and comparative genomics. Genome evolution is a constantly changing and evolving field due to the steadily growing number of sequenced genomes, both prokaryotic and eukaryotic, available to the scientific community and the public at large.