2015.04.09.UMinn Resurgence of Ref Quality Genomes
... • Extremely high sequence identity (>99.9%) • Thousands of gaps filled, hundreds of mis-assemblies corrected • Complete gene models, promoter regions for nearly every gene • True representation of transposons and other complex features • Opportunities for studying large scale chromosome evoluti ...
... • Extremely high sequence identity (>99.9%) • Thousands of gaps filled, hundreds of mis-assemblies corrected • Complete gene models, promoter regions for nearly every gene • True representation of transposons and other complex features • Opportunities for studying large scale chromosome evoluti ...
Genetic characterization of the mitochondrial DNA - (BORA)
... on opposite DNA strands, as well as genes on the same strand (Wolstenholme, 1992b). Within the metazoans the mitochondrial genomes range in size from 14 – 42 kb (Crease, 1999). This variation in size can to some extent be due to differences in gene length, but in most cases it is a result of size di ...
... on opposite DNA strands, as well as genes on the same strand (Wolstenholme, 1992b). Within the metazoans the mitochondrial genomes range in size from 14 – 42 kb (Crease, 1999). This variation in size can to some extent be due to differences in gene length, but in most cases it is a result of size di ...
Gibson Second Edition
... Cytological map – a representation of a chromosome based on the pattern of staining of bands Physical map – the location of transcripts and sites of insertions and deletions Genetic map – recombination rates vary along a chromosome, typically reduced near the telomere and centromere Distances betwee ...
... Cytological map – a representation of a chromosome based on the pattern of staining of bands Physical map – the location of transcripts and sites of insertions and deletions Genetic map – recombination rates vary along a chromosome, typically reduced near the telomere and centromere Distances betwee ...
View PDF - CiteSeerX
... The complete nucleotide sequence of the chloroplast genome of the hardwood species Eucalyptus globulus is presented and compared with chloroplast genomes of tree and non-tree angiosperms and two softwood tree species. The 160 286 bp genome is similar in gene order to that of Nicotiana, with an inver ...
... The complete nucleotide sequence of the chloroplast genome of the hardwood species Eucalyptus globulus is presented and compared with chloroplast genomes of tree and non-tree angiosperms and two softwood tree species. The 160 286 bp genome is similar in gene order to that of Nicotiana, with an inver ...
DNA Analysis Chapter 11
... – Ordering of base pairs in genes provides chemical instructions to manufacture particular proteins in the body – Genetic instructions are copied onto RNA (ribonucleic acid), which transmits this information to protein manufacturing sites within the cells ...
... – Ordering of base pairs in genes provides chemical instructions to manufacture particular proteins in the body – Genetic instructions are copied onto RNA (ribonucleic acid), which transmits this information to protein manufacturing sites within the cells ...
Comparative genomics of the Brassicaceae
... transcription factors, signal transducers, and developmental genes The divergence of these genes could have contributed to the increase in plant complexity seen in the origin of Angiosperm evolution and in the specialization of floral morphology to pollinating insects ...
... transcription factors, signal transducers, and developmental genes The divergence of these genes could have contributed to the increase in plant complexity seen in the origin of Angiosperm evolution and in the specialization of floral morphology to pollinating insects ...
Comparative genomics and the evolution of prokaryotes
... owing to a recent bottleneck in their population size. These results have shown that pseudogenes are more abundant than previously thought in bacterial genomes but are subject to quick elimination once disrupted because only a small proportion of them are conserved long enough to be found in several ...
... owing to a recent bottleneck in their population size. These results have shown that pseudogenes are more abundant than previously thought in bacterial genomes but are subject to quick elimination once disrupted because only a small proportion of them are conserved long enough to be found in several ...
2001_butterfield_THE SUGARCANE GENOME
... Single genes, and interaction between genes are involved in the control of phenotype The ultimate aim of many genome studies in plants is to enable manipulation of important phenotypic traits such as pest and disease resistance, and yield and quality characteristics. Dominant and recessive resistanc ...
... Single genes, and interaction between genes are involved in the control of phenotype The ultimate aim of many genome studies in plants is to enable manipulation of important phenotypic traits such as pest and disease resistance, and yield and quality characteristics. Dominant and recessive resistanc ...
7.03 Fall 2003 Problem Set #3 Solutions
... (b) Since none of the 100 Kanr tranductants were Lac+, we can conclude that Tn5 was never co-transduced with lac2+. This indicates that the distance between lac2- and Tn5 is at least one phage head (105 bp). We know from part (a) that Tn5 and lac1- are within one phage head since their cotransductio ...
... (b) Since none of the 100 Kanr tranductants were Lac+, we can conclude that Tn5 was never co-transduced with lac2+. This indicates that the distance between lac2- and Tn5 is at least one phage head (105 bp). We know from part (a) that Tn5 and lac1- are within one phage head since their cotransductio ...
Genome Projector: zoomable genome map with multiple views
... from illustrated pathway maps. However, due to the availability of these public databases on the World Wide Web, a technical difficulty in representing the comprehensive set of the highly complex data in each of these -omic layers, within a single seamless graphic, has resulted in limitations in the ...
... from illustrated pathway maps. However, due to the availability of these public databases on the World Wide Web, a technical difficulty in representing the comprehensive set of the highly complex data in each of these -omic layers, within a single seamless graphic, has resulted in limitations in the ...
The molecular basis of cytoplasmic male sterility and
... By virtue of its maternal inheritance, it was initially assumed that CMS is the result of lesions in either the mitochondrial or the chloroplast genomes. Indeed, in all cases where a specific CMSassociated gene has been identified and shown via correlative or direct means to be responsible for CMS, ...
... By virtue of its maternal inheritance, it was initially assumed that CMS is the result of lesions in either the mitochondrial or the chloroplast genomes. Indeed, in all cases where a specific CMSassociated gene has been identified and shown via correlative or direct means to be responsible for CMS, ...
Lecture 3 Origin of Variation
... rearrangements (translocations and inversions) and duplications to insertion and excisions of transposable elements to single base substitutions, insertions, and deletions. The mutation rate is subject to evolutionary modification. The vast majority of mutations appear to be deleterious. Mildl ...
... rearrangements (translocations and inversions) and duplications to insertion and excisions of transposable elements to single base substitutions, insertions, and deletions. The mutation rate is subject to evolutionary modification. The vast majority of mutations appear to be deleterious. Mildl ...
Genome Analysis Excerpt from Chapter 11
... There are several classes of sequences (transposable elements) that can move from one genome location to another, thus affecting gene content. Highly repetitive sequences in the genome are derived from such classes of sequences that move (transpose) from one genome location to another. These sequenc ...
... There are several classes of sequences (transposable elements) that can move from one genome location to another, thus affecting gene content. Highly repetitive sequences in the genome are derived from such classes of sequences that move (transpose) from one genome location to another. These sequenc ...
Comparative mycobacterial genomics Stewart T Cole
... abolish gene expression. These data suggest that functional genes were once present in M. leprae but that they have been silenced because their activities were no longer required by an obligate intracellular parasite. Three of these genes (fadE8, echA4, echA5) encode putative β-oxidation enzymes tha ...
... abolish gene expression. These data suggest that functional genes were once present in M. leprae but that they have been silenced because their activities were no longer required by an obligate intracellular parasite. Three of these genes (fadE8, echA4, echA5) encode putative β-oxidation enzymes tha ...
WHERE DOES THE VARIATION COME FROM IN THE FIRST PLACE?
... Recent studies by Rosenberg and Foster suggest that alteration of the recombination-repair pathway is essential for this result. Starvation is mutagenic – either as an unavoidable consequence of physiological deterioration OR increasing the mutation rate may be adaptive in the sense that not mut ...
... Recent studies by Rosenberg and Foster suggest that alteration of the recombination-repair pathway is essential for this result. Starvation is mutagenic – either as an unavoidable consequence of physiological deterioration OR increasing the mutation rate may be adaptive in the sense that not mut ...
Neanderthal-human Hybrids
... to be absent, rare or sterile (27). In mammals, the heterogametic sex is the male sex with two different sex chromosomes, X and Y. In 1922, J.B.S. Haldane wrote a key paper on “Sex ratio and unisexual sterility in hybrid animals”, where he showed that fertile XY progeny are unlikely (28). The high m ...
... to be absent, rare or sterile (27). In mammals, the heterogametic sex is the male sex with two different sex chromosomes, X and Y. In 1922, J.B.S. Haldane wrote a key paper on “Sex ratio and unisexual sterility in hybrid animals”, where he showed that fertile XY progeny are unlikely (28). The high m ...
ChimPipe Documentation Release v0.8.0 Bernardo Rodríguez-Martín, Emilio Palumbo and Sarah Djebali
... • Cancer genomics. It is very well know that the generation of fusion genes through chromosomal rearrangements is a major driver in certain types of cancer. These are hydrid genes formed from two previously separate genes that encode altered proteins with abnormal activity. Thus, the identification ...
... • Cancer genomics. It is very well know that the generation of fusion genes through chromosomal rearrangements is a major driver in certain types of cancer. These are hydrid genes formed from two previously separate genes that encode altered proteins with abnormal activity. Thus, the identification ...
Body maps on the human genome | SpringerLink
... Background: Chromosomes have territories, or preferred locales, in the cell nucleus. When these sites are taken into account, some large-scale structure of the human genome emerges. Results: The synoptic picture is that genes highly expressed in particular topologically compact tissues are not rando ...
... Background: Chromosomes have territories, or preferred locales, in the cell nucleus. When these sites are taken into account, some large-scale structure of the human genome emerges. Results: The synoptic picture is that genes highly expressed in particular topologically compact tissues are not rando ...
2009 Hart and Grosbe.. - Evolution and Ecology | UC Davis
... which Rhizocephala are not barnacles but acquired a cypris by hybridization with a barnacle: ‘‘The two contrasting concepts to explain rhizocephalans can be experimentally distinguished. If rhizocephalans are parasitic barnacles, i.e., adults that lost all barnacle morphology by reduction yet their ...
... which Rhizocephala are not barnacles but acquired a cypris by hybridization with a barnacle: ‘‘The two contrasting concepts to explain rhizocephalans can be experimentally distinguished. If rhizocephalans are parasitic barnacles, i.e., adults that lost all barnacle morphology by reduction yet their ...
PAG 2012 - Illumina
... Scientists worldwide are discovering that Illumina provides the industry’s best solutions for cutting-edge genetics research. Below is a list of workshops and posters at the Plant & Animal Genomes XX Conference that present results from studies using Illumina products. Visit these presentations and ...
... Scientists worldwide are discovering that Illumina provides the industry’s best solutions for cutting-edge genetics research. Below is a list of workshops and posters at the Plant & Animal Genomes XX Conference that present results from studies using Illumina products. Visit these presentations and ...
Begins of the human genome project
... The process of the human genome project: The sequence of the human genes is determined, but it is actually the reference sequence. It does not represent an exact match for any person’s genome, since genome in human is specific to each person. In the human genome project, the researchers blood sample ...
... The process of the human genome project: The sequence of the human genes is determined, but it is actually the reference sequence. It does not represent an exact match for any person’s genome, since genome in human is specific to each person. In the human genome project, the researchers blood sample ...
Down Syndrome Research and Practice Volume 5 Issue 3 Pages
... described before, were found in the ATPase G8764A and ND-5 G13243A genes with the same substitutions of alanine by tryptophane and in gene ND-1 G3337A with the exchange of valine by methionine. In our opinion the mtDNA mutations in cases of Alzheimer’s diseases, insulin independent diabetes, some ca ...
... described before, were found in the ATPase G8764A and ND-5 G13243A genes with the same substitutions of alanine by tryptophane and in gene ND-1 G3337A with the exchange of valine by methionine. In our opinion the mtDNA mutations in cases of Alzheimer’s diseases, insulin independent diabetes, some ca ...
How is the biological information arranged in genome?
... many organisms described below were accelerated, and a bacterial genome (582,970 bp) was chemically synthesized based on Mycoplasma genitalium [25], although partial unreadable regions should be still remained in each genome. In addition, many studies of the DNA methylation, the modification of hist ...
... many organisms described below were accelerated, and a bacterial genome (582,970 bp) was chemically synthesized based on Mycoplasma genitalium [25], although partial unreadable regions should be still remained in each genome. In addition, many studies of the DNA methylation, the modification of hist ...
1. Telomeres 2. Centromeric Repeats 3. Retrotransposons (Class I
... Retroelement copy number is a major determinant of genome size variation in higher plants ...
... Retroelement copy number is a major determinant of genome size variation in higher plants ...