The Complete Mitochondrial DNA (mtDNA) of the Donkey and
... gene may exhibit quite different relative rates of evolution in different species-pairs. Thus, in the donkey/horse comparison the NADH3 gene shows the lowest total nt difference, 6.4%. The same gene has the second-lowest difference in the comparison between the seals, 2.3%. Between the two whales th ...
... gene may exhibit quite different relative rates of evolution in different species-pairs. Thus, in the donkey/horse comparison the NADH3 gene shows the lowest total nt difference, 6.4%. The same gene has the second-lowest difference in the comparison between the seals, 2.3%. Between the two whales th ...
Cytonuclear genomic dissociation in African elephant species
... high as 90% among savanna elephants at some locales (e.g., Serengeti; Fig. 1). The occasional dispersal of females from forest to savanna probably cannot completely account for the presence of forest-typical clade II mtDNA in such high proportions at great distances from the forest. Savanna elephant ...
... high as 90% among savanna elephants at some locales (e.g., Serengeti; Fig. 1). The occasional dispersal of females from forest to savanna probably cannot completely account for the presence of forest-typical clade II mtDNA in such high proportions at great distances from the forest. Savanna elephant ...
Recurrence time statistics: Versatile tools for genomic DNA
... the accuracy and simplify the training of existing coding-region or gene identification algorithms (see the recent review articles [16,17] and the references therein), and to facilitate the development of new gene recognition algorithms, it would be highly desirable to find new codon indices. Over t ...
... the accuracy and simplify the training of existing coding-region or gene identification algorithms (see the recent review articles [16,17] and the references therein), and to facilitate the development of new gene recognition algorithms, it would be highly desirable to find new codon indices. Over t ...
Genetic transfer and genome evolution in MRSA
... nucleotides are identical between strains.The early ISR sequence nomenclature (6) has been used and is recommended in further work on rrns. Strains H11 and ATCC 33952 isolated from the Austin and Repatriation Medical Centre show further differences (strains ATCC 33592 and H11, rrnF at nt 443 and 453 ...
... nucleotides are identical between strains.The early ISR sequence nomenclature (6) has been used and is recommended in further work on rrns. Strains H11 and ATCC 33952 isolated from the Austin and Repatriation Medical Centre show further differences (strains ATCC 33592 and H11, rrnF at nt 443 and 453 ...
Computational Biology
... A = 1 2 3 4 5 6 by one reversal each such that G1 = 1 2 -4 -3 5 6 G2 = 1 -4 -3 -2 5 6 G3 = 1 2 3 4 -5 6 Searching for the breakpoint median will produce 4 optimal solutions. A, but also G1, G2, and G3. If the median is A, then we have two breakpoints on each edge of the tree for a total of six. But ...
... A = 1 2 3 4 5 6 by one reversal each such that G1 = 1 2 -4 -3 5 6 G2 = 1 -4 -3 -2 5 6 G3 = 1 2 3 4 -5 6 Searching for the breakpoint median will produce 4 optimal solutions. A, but also G1, G2, and G3. If the median is A, then we have two breakpoints on each edge of the tree for a total of six. But ...
One vitellogenin gene in an ocean of many: The molecular ecology
... paralogs: aqp8aa, -8ab and -8b [4-7]. In the present context, we assembled the genomic repertoire of aquaporins in the protacanthopterygian Atlantic salmon (Salmo salar), and found that this tetraploid organism encodes the highest copy number of aquaporins of any vertebrate studied to date with com ...
... paralogs: aqp8aa, -8ab and -8b [4-7]. In the present context, we assembled the genomic repertoire of aquaporins in the protacanthopterygian Atlantic salmon (Salmo salar), and found that this tetraploid organism encodes the highest copy number of aquaporins of any vertebrate studied to date with com ...
Sequencing Crop Genomes - Tropical Life Sciences Research
... SSR) are selectively neutral, as they are located in non-coding and nonregulatory regions. When such markers are used for marker assisted selection, there will be chances of false positives, due to genetic recombination (Salgotra et al. 2014). Gene based functional nucleotide polymorphism, if identi ...
... SSR) are selectively neutral, as they are located in non-coding and nonregulatory regions. When such markers are used for marker assisted selection, there will be chances of false positives, due to genetic recombination (Salgotra et al. 2014). Gene based functional nucleotide polymorphism, if identi ...
deschamp_2009_sequencing
... Polymorphism rate in one line vs. another = need to set conditions for alignment ...
... Polymorphism rate in one line vs. another = need to set conditions for alignment ...
Supplementary Methods.
... assessment of both the human-rodent-ultra- as well as human-fugu- tested fragments, with 7 of the assayed elements eliminated due to limited synteny or missing sequence in the rat genome. We found that positive enhancers overlapped human-rodent conserved elements with a mean length 1,630 bp, many of ...
... assessment of both the human-rodent-ultra- as well as human-fugu- tested fragments, with 7 of the assayed elements eliminated due to limited synteny or missing sequence in the rat genome. We found that positive enhancers overlapped human-rodent conserved elements with a mean length 1,630 bp, many of ...
The International Tomato Sequencing Project and Related
... Our group is sequencing 3 of the chromosomes, the remaining 9 are each being sequenced by a group in a different country. ...
... Our group is sequencing 3 of the chromosomes, the remaining 9 are each being sequenced by a group in a different country. ...
- CSHL Institutional Repository
... Paramecium is a privileged model for investigation of nonMendelian heredity and the underlying epigenetic mechanisms. Sonneborn (10) was the first to document cytoplasmic heredity of mating type and other traits in Paramecium. It is just now becoming clear that these examples of cytoplasmic heredity ...
... Paramecium is a privileged model for investigation of nonMendelian heredity and the underlying epigenetic mechanisms. Sonneborn (10) was the first to document cytoplasmic heredity of mating type and other traits in Paramecium. It is just now becoming clear that these examples of cytoplasmic heredity ...
A general method for gene isolation in tagging approaches
... assay it was sufficient to lower the band complexity by extending the adapter primer by one nucleotide to get a clear picture (Figure 2). Due to this extension, four sets of PCR reactions were required for the complete analysis. One single band was displayed in all bx1::Mu mutants and in none of the ...
... assay it was sufficient to lower the band complexity by extending the adapter primer by one nucleotide to get a clear picture (Figure 2). Due to this extension, four sets of PCR reactions were required for the complete analysis. One single band was displayed in all bx1::Mu mutants and in none of the ...
... with a final verdict on the fruits of their science, the directors of these nine multimillion-dollar institutes are out to prove they’re just right. posals in hopes of leading to highly innovative technology and science. “They wanted 100 flowers to bloom to see what was successful,” as Roger Brent, ...
No Slide Title
... of their fragments, performed by the program FPC. FPC uses an algorithm to cluster clones into contigs based on their probability of coincidence score. For each contig, it builds a consensus band (CB) map which is similar to a restriction map; but it does not try to resolve all the errors. The CB ma ...
... of their fragments, performed by the program FPC. FPC uses an algorithm to cluster clones into contigs based on their probability of coincidence score. For each contig, it builds a consensus band (CB) map which is similar to a restriction map; but it does not try to resolve all the errors. The CB ma ...
Slide 1
... describe complex variation, we need to subdivide genotypes and phenotypes into traits. This procedure requires care and common sense and strongly depends on the nature of variation (see Basic Concepts). Traits can be of three kinds: 1) Unordered traits, such that there is no structure in their state ...
... describe complex variation, we need to subdivide genotypes and phenotypes into traits. This procedure requires care and common sense and strongly depends on the nature of variation (see Basic Concepts). Traits can be of three kinds: 1) Unordered traits, such that there is no structure in their state ...
draft - IC
... Dierent relative weights for the operations have been considered. Proposals have also diered in the number and type of allowed chromosomes (unichromosomal vs. multichromosomal genomes; linear or circular chromosomes). When more than two genomes are considered, we have the more challenging problem ...
... Dierent relative weights for the operations have been considered. Proposals have also diered in the number and type of allowed chromosomes (unichromosomal vs. multichromosomal genomes; linear or circular chromosomes). When more than two genomes are considered, we have the more challenging problem ...
ParameciumDB - Nucleic Acids Research
... Every page of ParameciumDB contains a top row of navigation tabs (Home, Search, Gbrowse, Blast, Tools, Help) and a sidebar. The sidebar on the home page (and some information pages) contains internal and external links for community news, downloads and information about specific topics such as the g ...
... Every page of ParameciumDB contains a top row of navigation tabs (Home, Search, Gbrowse, Blast, Tools, Help) and a sidebar. The sidebar on the home page (and some information pages) contains internal and external links for community news, downloads and information about specific topics such as the g ...
Here - EdSpace
... Through plasmid based delivery, 20bp sgRNAs can be integrated into a template plasmid through site-directed mutagenesis. Genomic software can be used to determine the idea location to insert sgRNAs into a plasmid. Construction of an expression plasmid for sgRNA is quite simple and rapid as it only r ...
... Through plasmid based delivery, 20bp sgRNAs can be integrated into a template plasmid through site-directed mutagenesis. Genomic software can be used to determine the idea location to insert sgRNAs into a plasmid. Construction of an expression plasmid for sgRNA is quite simple and rapid as it only r ...
The Macaque Genome: Lessons from Comparative
... about the relatedness among organisms and the traits that make them similar or different, can often be inferred by examining them at the DNA level, i.e., by looking at their DNA sequences. Comparing the DNA sequence of our own genome to other animal genomes (a field of study known as comparative gen ...
... about the relatedness among organisms and the traits that make them similar or different, can often be inferred by examining them at the DNA level, i.e., by looking at their DNA sequences. Comparing the DNA sequence of our own genome to other animal genomes (a field of study known as comparative gen ...
PDF
... recently launched interlaboratory project that aims to sequence over the next 5 years the genomes of 5,000 insects and related arthropod species important for agriculture, medicine and biotechnology [37] should be highly useful for such genomic screens. On the other hand, transposase-mediated remobi ...
... recently launched interlaboratory project that aims to sequence over the next 5 years the genomes of 5,000 insects and related arthropod species important for agriculture, medicine and biotechnology [37] should be highly useful for such genomic screens. On the other hand, transposase-mediated remobi ...
Toward a therapy for mitochondrial disease
... Beside mtDNA-encoded proteins, the vast majority of the ∼1500 polypeptides forming the mitochondrial proteome is encoded by nuclear genes, which are translated in the cytosol into proteins and finally imported into the organelles. These proteins are required for a massive number of biological process ...
... Beside mtDNA-encoded proteins, the vast majority of the ∼1500 polypeptides forming the mitochondrial proteome is encoded by nuclear genes, which are translated in the cytosol into proteins and finally imported into the organelles. These proteins are required for a massive number of biological process ...
An Exploration of Command-Line BLAST
... blastn –query watermelon_nt/nad4L.fasta –db plantmtgenomes.fasta –out results.txt # this next BLASTN search uses GenBank (nr) as the database, which would take a long time to download and takes a long time to run remotely. Thus, instead of running command-line blast, let’s use the BLAST webpage (htt ...
... blastn –query watermelon_nt/nad4L.fasta –db plantmtgenomes.fasta –out results.txt # this next BLASTN search uses GenBank (nr) as the database, which would take a long time to download and takes a long time to run remotely. Thus, instead of running command-line blast, let’s use the BLAST webpage (htt ...
Text S1, DOCX file, 0.03 MB
... pre_correction). This resulted in 223,135 scaffolds (135,158 scaffolds > 1 kbp) with an N50 of 14.3 kbp and maximum scaffold size of 979.2 kbp. After discarding scaffolds less than 2 kbp, the scaffold coverage per sample was estimated using a combination of bwa mem (4), samtools (5), and perl script ...
... pre_correction). This resulted in 223,135 scaffolds (135,158 scaffolds > 1 kbp) with an N50 of 14.3 kbp and maximum scaffold size of 979.2 kbp. After discarding scaffolds less than 2 kbp, the scaffold coverage per sample was estimated using a combination of bwa mem (4), samtools (5), and perl script ...
Full-Text PDF
... Ca2+ storage (rewiewed in [1] and references therein). They play a central role in aging [2] and are subject to mitophagy, the pathway that mediates the selective elimination of dysfunctional or unwanted mitochondria and is critical to proper cellular functions [3]. Without a proper mitochondrial st ...
... Ca2+ storage (rewiewed in [1] and references therein). They play a central role in aging [2] and are subject to mitophagy, the pathway that mediates the selective elimination of dysfunctional or unwanted mitochondria and is critical to proper cellular functions [3]. Without a proper mitochondrial st ...