pdf
... Thus leaving us with some information about the very ends of these pieces of DNA with some unknown insert length between them (drawn from a known distribution). The end result of this lab-work is many millions or billions of short, paired reads that can then be used to (attempt to) reassemble the en ...
... Thus leaving us with some information about the very ends of these pieces of DNA with some unknown insert length between them (drawn from a known distribution). The end result of this lab-work is many millions or billions of short, paired reads that can then be used to (attempt to) reassemble the en ...
A natural chimeric yeast containing genetic material from three species
... identical, while the sequences of other Saccharomyces species were different (Fig. 2). The data on the coding regions of the ATP8 and ATP9 genes suggested that a likely donor of the CID1 mitochondrial genome could be found among S. paradoxus-like and\or Saccharomyces sp. IFO 1802-like yeasts. Howeve ...
... identical, while the sequences of other Saccharomyces species were different (Fig. 2). The data on the coding regions of the ATP8 and ATP9 genes suggested that a likely donor of the CID1 mitochondrial genome could be found among S. paradoxus-like and\or Saccharomyces sp. IFO 1802-like yeasts. Howeve ...
pdf
... Mohammadin & Edger, 2012) postulates that species diversification often follows WGD events, but only after a ‘lag phase’ that can last up to several million years. This model explains the often observed pattern of a depauperate clade sister to a highly diverse one, with an observable time lag betwee ...
... Mohammadin & Edger, 2012) postulates that species diversification often follows WGD events, but only after a ‘lag phase’ that can last up to several million years. This model explains the often observed pattern of a depauperate clade sister to a highly diverse one, with an observable time lag betwee ...
Full-text PDF
... Let us now consider an example. It has long been hypothesized that there may be some kind of correspondence between gene transcription order and functional relationships of the encoded proteins. Dandekar et al. showed that some highly conserved gene pairs do indeed interact physically on the same me ...
... Let us now consider an example. It has long been hypothesized that there may be some kind of correspondence between gene transcription order and functional relationships of the encoded proteins. Dandekar et al. showed that some highly conserved gene pairs do indeed interact physically on the same me ...
(lectures 24
... Hawaiian species of the genus Drosophila. Being dipterans (flies) they have giant salivary gland chromosomes which are not only polytene (multiple stranded) and can have many bands identified on them by staining for DNA, but also the two homologues are paired in this larval salivary gland! (This mus ...
... Hawaiian species of the genus Drosophila. Being dipterans (flies) they have giant salivary gland chromosomes which are not only polytene (multiple stranded) and can have many bands identified on them by staining for DNA, but also the two homologues are paired in this larval salivary gland! (This mus ...
Genomic evidence for ameiotic evolution in the bdelloid
... density of transposable elements observed around HGTs and viceversa (Supplementary Note E5). If A. vaga has been acquiring transposable elements by HGT, a question that arises is what keeps their number lower than in most other metazoans. Many fragmented copies have apparently been formed through mi ...
... density of transposable elements observed around HGTs and viceversa (Supplementary Note E5). If A. vaga has been acquiring transposable elements by HGT, a question that arises is what keeps their number lower than in most other metazoans. Many fragmented copies have apparently been formed through mi ...
Impact of New Diagnostic Technologies in the Clinical Microbiology
... Whole genome sequencing of microorganisms Rapid identification of pathogenic organisms Detection from patient specimens or primary cultures Rapid inferred antimicrobial susceptibility and virulence ...
... Whole genome sequencing of microorganisms Rapid identification of pathogenic organisms Detection from patient specimens or primary cultures Rapid inferred antimicrobial susceptibility and virulence ...
$doc.title
... DNA, RNA (e.g. RNAi), protein (prion), & modifications (e.g. 5mC) “Horizontal” (generally between species) transduction, transformation, transgenic “Vertical” Mitosis: duplication & division (e.g. somatic) Meiosis/fusion: diploid recombination, reduction Maternal (e.g. mitochondrial) ...
... DNA, RNA (e.g. RNAi), protein (prion), & modifications (e.g. 5mC) “Horizontal” (generally between species) transduction, transformation, transgenic “Vertical” Mitosis: duplication & division (e.g. somatic) Meiosis/fusion: diploid recombination, reduction Maternal (e.g. mitochondrial) ...
Chapter 13
... These fragments were combined with vectors to create recombinant DNA, cloned to make many copies, and sequenced using automated sequencing machines. Computers analyzed the overlapping regions to generate one continuous sequence. ...
... These fragments were combined with vectors to create recombinant DNA, cloned to make many copies, and sequenced using automated sequencing machines. Computers analyzed the overlapping regions to generate one continuous sequence. ...
Nuclear Genes That Encode Mitochondrial Proteins
... sion of particular subgenomic DNA molecules to nearly undetectable levels during plant development. This process, first discovered in maize (Small et al., 1987), appears to be widespread in plants and may constitute a means of maintaining mitochondrial genetic variation in a silenced but retrievable ...
... sion of particular subgenomic DNA molecules to nearly undetectable levels during plant development. This process, first discovered in maize (Small et al., 1987), appears to be widespread in plants and may constitute a means of maintaining mitochondrial genetic variation in a silenced but retrievable ...
Physiology is rocking the foundations of evolutionary biology
... similar in both genomes. This suggests that transposons may have played a major role in primate and human evolution. Over two-thirds of the human genome is derived from mobile elements (de Koning et al. 2011), and there have been well over 3 million transposition events in its evolution. McClintock ...
... similar in both genomes. This suggests that transposons may have played a major role in primate and human evolution. Over two-thirds of the human genome is derived from mobile elements (de Koning et al. 2011), and there have been well over 3 million transposition events in its evolution. McClintock ...
Evidence for Variable Selective Pressures at a
... approach in order to investigate the formation of intrastrand secondary structures in the human mtDNA control region. Our most striking results are those regarding a new cloverleaf-like secondary structure predicted for a 93-bp stretch of the control region 5#-peripheral domain. Randomized sequences ...
... approach in order to investigate the formation of intrastrand secondary structures in the human mtDNA control region. Our most striking results are those regarding a new cloverleaf-like secondary structure predicted for a 93-bp stretch of the control region 5#-peripheral domain. Randomized sequences ...
lecture 3
... Actively reorganise gene organisation by creating, shuffling or modifying existing ...
... Actively reorganise gene organisation by creating, shuffling or modifying existing ...
UCSC genome support forum
... actually to align larger regions of the reference assembly sequence. The suitability of BLAT depends on the size of the region that you're searching in addition to the amount of repetitive content. The tiles that Galt referred to are 11-base sequences that are overrepresented in the genome. In addit ...
... actually to align larger regions of the reference assembly sequence. The suitability of BLAT depends on the size of the region that you're searching in addition to the amount of repetitive content. The tiles that Galt referred to are 11-base sequences that are overrepresented in the genome. In addit ...
ppt6
... Genomic sequencing In its first 100 years, evolutionary theory was about organismal traits Starting from the 1960’s, molecular traits became available (mostly looking at proteins) Since the 1990’s, and to its full extent today, we can cheaply sequence whole genomes It is expected that within a few y ...
... Genomic sequencing In its first 100 years, evolutionary theory was about organismal traits Starting from the 1960’s, molecular traits became available (mostly looking at proteins) Since the 1990’s, and to its full extent today, we can cheaply sequence whole genomes It is expected that within a few y ...
Genome Sequence Quality - Rice Genome Annotation Project
... • Cot analysis of DNA was common in the 1970s to assess the repeat content in a given genome using a spectrophotometer and knowledge of reassociation kinetics • Principle is that highly repeated DNA will hybridize quickly to itself, moderately repeated DNA will take longer to reanneal and low comple ...
... • Cot analysis of DNA was common in the 1970s to assess the repeat content in a given genome using a spectrophotometer and knowledge of reassociation kinetics • Principle is that highly repeated DNA will hybridize quickly to itself, moderately repeated DNA will take longer to reanneal and low comple ...
Exploring biochemistry using metabolic pathways
... of these groups. What are the genes that all the genomes share? Are there specific patterns of presence or absence that you see are specific to each of these genera? Locate those genes th ...
... of these groups. What are the genes that all the genomes share? Are there specific patterns of presence or absence that you see are specific to each of these genera? Locate those genes th ...
BB30055: Genes and genomes
... RT from other sources such as LINEs) ~100-300bp long Internal polymerase III promoter No proteins Share 3’ ends with LINEs 3 related SINE families in humans – active Alu, inactive MIR and Ther2/MIR3. ...
... RT from other sources such as LINEs) ~100-300bp long Internal polymerase III promoter No proteins Share 3’ ends with LINEs 3 related SINE families in humans – active Alu, inactive MIR and Ther2/MIR3. ...
Tools for Comparing Bacterial Genomes
... a few or large numbers of genomes. The tools are easy to use and produce results that are easy to interpret and can be graphically represented. The latter is an important quality determinant of any sequence analysis tool when dealing with genomes, as the complexity of input data is so large. ...
... a few or large numbers of genomes. The tools are easy to use and produce results that are easy to interpret and can be graphically represented. The latter is an important quality determinant of any sequence analysis tool when dealing with genomes, as the complexity of input data is so large. ...
Failures in Mitochondrial tRNA and tRNA Metabolism
... essential hypertension at the age at onset, ranging from 35 to 60 years old. Sequence analysis of the complete mitochondrial DNA in this pedigree identified the novel homoplasmic 4401A⬎G mutation localizing at the spacer immediately to the 5⬘ end of tRNAMet and tRNAGln genes and 39 other variants be ...
... essential hypertension at the age at onset, ranging from 35 to 60 years old. Sequence analysis of the complete mitochondrial DNA in this pedigree identified the novel homoplasmic 4401A⬎G mutation localizing at the spacer immediately to the 5⬘ end of tRNAMet and tRNAGln genes and 39 other variants be ...
No Slide Title
... 5701) strains were grown directly on a transparent, conductive anode (indium tin oxide-coated polyethylene terephthalate) and power generation under light and dark conditions was evaluated using a single-chamber bio-photovoltaic cell (BPV) system. Increased power outputs were observed for all strain ...
... 5701) strains were grown directly on a transparent, conductive anode (indium tin oxide-coated polyethylene terephthalate) and power generation under light and dark conditions was evaluated using a single-chamber bio-photovoltaic cell (BPV) system. Increased power outputs were observed for all strain ...
Published Version - Queen Mary University of London
... Mohammadin & Edger, 2012) postulates that species diversification often follows WGD events, but only after a ‘lag phase’ that can last up to several million years. This model explains the often observed pattern of a depauperate clade sister to a highly diverse one, with an observable time lag betwee ...
... Mohammadin & Edger, 2012) postulates that species diversification often follows WGD events, but only after a ‘lag phase’ that can last up to several million years. This model explains the often observed pattern of a depauperate clade sister to a highly diverse one, with an observable time lag betwee ...
Ecophysiology of Thioploca ingrica as revealed by the
... procedure (see Materials and methods). As a result, 24 scaffolds of 45 kb were constructed, all of which showed a similar range of GC content (from 39.6 to 44.3%, mostly B41%). All but one of the scaffolds showed a similar sequence coverage (from 104 to 116 ), suggesting that these scaffolds wer ...
... procedure (see Materials and methods). As a result, 24 scaffolds of 45 kb were constructed, all of which showed a similar range of GC content (from 39.6 to 44.3%, mostly B41%). All but one of the scaffolds showed a similar sequence coverage (from 104 to 116 ), suggesting that these scaffolds wer ...
ppt
... proper development of speech and language regions of the brain during embryogenesis. There is a possibility that this particular noncoding transcript may have some functional contribution in the development of the FOXP2 gene ...
... proper development of speech and language regions of the brain during embryogenesis. There is a possibility that this particular noncoding transcript may have some functional contribution in the development of the FOXP2 gene ...
General
... KEGG does not predict presence or absence of pathways KEGG lacks pathway hole filler, operon predictor Curation tools KEGG does not distribute curation tools No ability to customize pathways to the organism Pathway Tools schema much more comprehensive Visualization and analysis KEGG ...
... KEGG does not predict presence or absence of pathways KEGG lacks pathway hole filler, operon predictor Curation tools KEGG does not distribute curation tools No ability to customize pathways to the organism Pathway Tools schema much more comprehensive Visualization and analysis KEGG ...