A unique segment of the hepatitis B virus group A genotype
... African isolates, three cluster into genotypic group D and two into group A. The rest of group A are serotype adw. Sequence data from two patients, both of Chinese origin, do not cluster with the rest of the specimens but cluster into group B (adw) and group C (adr), respectively. To improve the acc ...
... African isolates, three cluster into genotypic group D and two into group A. The rest of group A are serotype adw. Sequence data from two patients, both of Chinese origin, do not cluster with the rest of the specimens but cluster into group B (adw) and group C (adr), respectively. To improve the acc ...
Primary Sequence of Ovomucoid Messenger RNA as Determined
... We have previously reported that the ovomucoid gene has a complex structure containing seven intervening sequences (9, 21) . Messenger RNA sequences are required for the study of the fine structure of complex eucaryotic genes . Previous knowledge of mRNA sequences allowed the identification of the c ...
... We have previously reported that the ovomucoid gene has a complex structure containing seven intervening sequences (9, 21) . Messenger RNA sequences are required for the study of the fine structure of complex eucaryotic genes . Previous knowledge of mRNA sequences allowed the identification of the c ...
Sequence Analysis Tools
... – The sequence itself is not informative; it must be analyzed by comparative methods against existing databases to develop hypothesis concerning relatives and function. – Abundance of biological sequence data forbids ...
... – The sequence itself is not informative; it must be analyzed by comparative methods against existing databases to develop hypothesis concerning relatives and function. – Abundance of biological sequence data forbids ...
Primary Sequence of Ovomucoid Messenger RNA
... We have previously reported that the ovomucoid gene has a complex structure containing seven intervening sequences (9, 21) . Messenger RNA sequences are required for the study of the fine structure of complex eucaryotic genes . Previous knowledge of mRNA sequences allowed the identification of the c ...
... We have previously reported that the ovomucoid gene has a complex structure containing seven intervening sequences (9, 21) . Messenger RNA sequences are required for the study of the fine structure of complex eucaryotic genes . Previous knowledge of mRNA sequences allowed the identification of the c ...
• 100 times faster than dynamic programming. • Good for database
... normalizing with statistical variables that define a scoring system (K and λ). Bit scores from different alignments, even employing different scoring matrices can be compared. ...
... normalizing with statistical variables that define a scoring system (K and λ). Bit scores from different alignments, even employing different scoring matrices can be compared. ...
Genomic analysis and comparison of very virulent infectious bursal
... gene encoding VP2 as VP2 has been identified as major host-protective immunogen of IBDV and contains the antigenic regions responsible for inducing the neutralizing antibodies in host [14, 15]. The main neutralizing antigenic domain in VP2 is found to be at amino acids position 206 and 350 [16]. The ...
... gene encoding VP2 as VP2 has been identified as major host-protective immunogen of IBDV and contains the antigenic regions responsible for inducing the neutralizing antibodies in host [14, 15]. The main neutralizing antigenic domain in VP2 is found to be at amino acids position 206 and 350 [16]. The ...
the sequence alignment itself is a hypothesis about the homology of
... • Repeated nucleotides, SSRs, make alignment difficult ...
... • Repeated nucleotides, SSRs, make alignment difficult ...
NUCLEOTIDE and PROTEIN databases
... a wide range of web-based retrieval and analysis tools Is built primarily from the submission of sequence data from authors (i.e BankIt) and from bulk submission of high-throughput data from sequencing centre (i.e. Sequin) ...
... a wide range of web-based retrieval and analysis tools Is built primarily from the submission of sequence data from authors (i.e BankIt) and from bulk submission of high-throughput data from sequencing centre (i.e. Sequin) ...
Request pdf - University of Cambridge
... it has been possible to determine that the spectral shift between these pigments is largely achieved by amino acid substitution at only two sites, both in transmembrane region 6 (TM6) (Neitz et al., 1991; Williams et al., 1992; Winderickx, Lindsey, Sanocki, Teller, Motulsky & Deeb, 1992; Merbs & Nat ...
... it has been possible to determine that the spectral shift between these pigments is largely achieved by amino acid substitution at only two sites, both in transmembrane region 6 (TM6) (Neitz et al., 1991; Williams et al., 1992; Winderickx, Lindsey, Sanocki, Teller, Motulsky & Deeb, 1992; Merbs & Nat ...
Two major types of JC virus defined in progressive multifocal
... (Walker & Frisque, 1986). The many efforts to type JCV isolates by D N A sequence variation have focused on the non-coding regulatory region. The hypervariable regulatory region of virus isolated from PML brain has multiple sequence rearrangements, with extensive deletions and duplication, which var ...
... (Walker & Frisque, 1986). The many efforts to type JCV isolates by D N A sequence variation have focused on the non-coding regulatory region. The hypervariable regulatory region of virus isolated from PML brain has multiple sequence rearrangements, with extensive deletions and duplication, which var ...
Sample pages 2 PDF
... nucleotide and protein databases. Once genes of interest are identified, Entrez allows location of many similar sequences (however, not necessarily homologous). These can be identified by taxonomic group, terms in titles or abstracts of papers, authors, key words, accession numbers from the database ...
... nucleotide and protein databases. Once genes of interest are identified, Entrez allows location of many similar sequences (however, not necessarily homologous). These can be identified by taxonomic group, terms in titles or abstracts of papers, authors, key words, accession numbers from the database ...
Vibrio diabolicus sp. nov., a New Polysaccharide
... DNA reassociation. The percentages of DNA-DNA relatedness were determined from renaturation rates by the S1 nuclease method (lo), as slightly modified by Popoff and Coynault (20). A DNA probe from strain HE800T was labelled by using a Nick translation kit (Amersham, Buckinghamshire,England). The DNA ...
... DNA reassociation. The percentages of DNA-DNA relatedness were determined from renaturation rates by the S1 nuclease method (lo), as slightly modified by Popoff and Coynault (20). A DNA probe from strain HE800T was labelled by using a Nick translation kit (Amersham, Buckinghamshire,England). The DNA ...
Nucleotide sequence of the thioredoxin gene from
... The N-terminal sequence of thioredoxin from E. eo2i strain SK39gl was d e t e r m i n e d w i t h t h e D A B I T C method and found to be Ser-Asp-Lys-lle-~ which is identical to that of E. co2i strain B (3). ...
... The N-terminal sequence of thioredoxin from E. eo2i strain SK39gl was d e t e r m i n e d w i t h t h e D A B I T C method and found to be Ser-Asp-Lys-lle-~ which is identical to that of E. co2i strain B (3). ...
On the trail of protein sequences
... a number of computer aspects and included some newly identified homologies. Unhappily, there was a 6-year delay between submission and publication (Doolittle, 1979), during which time others had come to many of the same conclusions. Some of the predictions of homology made in the article have only r ...
... a number of computer aspects and included some newly identified homologies. Unhappily, there was a 6-year delay between submission and publication (Doolittle, 1979), during which time others had come to many of the same conclusions. Some of the predictions of homology made in the article have only r ...
Powerpoint slides
... • E-value, Expectation value; this is the expected number of hits of at least the given score, that you would expect by random chance for the search database. • P-value, Probability value; this is the probability that a hit would attain at least the given score, by random chance for the search datab ...
... • E-value, Expectation value; this is the expected number of hits of at least the given score, that you would expect by random chance for the search database. • P-value, Probability value; this is the probability that a hit would attain at least the given score, by random chance for the search datab ...
Molecular epidemiology of infectious bursal disease virus in Zambia
... The hypervariable region (HVR) within VP2, between amino acid residues 206 and 350, is highly conserved, with the highest amino acid sequence variation amongst serotype 1 strains. The nucleotide and deduced amino acid sequences of this region are widely used for molecular epidemiological studies of ...
... The hypervariable region (HVR) within VP2, between amino acid residues 206 and 350, is highly conserved, with the highest amino acid sequence variation amongst serotype 1 strains. The nucleotide and deduced amino acid sequences of this region are widely used for molecular epidemiological studies of ...
Motif recognition - www.bioinf.org.uk
... that the result was obtained by chance due to the amino acid distribution in the positive set (random model). •Z-score: one needs to estimate an average score and a standard deviation as a function of sequence length. Then, one uses the number of standard deviations each sequence is away from the av ...
... that the result was obtained by chance due to the amino acid distribution in the positive set (random model). •Z-score: one needs to estimate an average score and a standard deviation as a function of sequence length. Then, one uses the number of standard deviations each sequence is away from the av ...
記錄 編號 3862 狀態 NC090FJU00112010 助教 查核 索書 號 學校
... organized ORFs present in insertion sequences belonging to the IS21 family, this ...
... organized ORFs present in insertion sequences belonging to the IS21 family, this ...
PowerPoint
... Apart from the PAM and BLOSUM series, a great number of further matrices have been developed. Matrices have been made based on DNA, protein structure, information content, etc. For local alignment, BLOSUM62 is often superior; for distant (global) alignments, BLOSUM50, GONNET, or (still) PAM250 work ...
... Apart from the PAM and BLOSUM series, a great number of further matrices have been developed. Matrices have been made based on DNA, protein structure, information content, etc. For local alignment, BLOSUM62 is often superior; for distant (global) alignments, BLOSUM50, GONNET, or (still) PAM250 work ...
Phylogenetic relationship of phototrophic purple sulfur bacteria
... environmental isolates, agar shake dilution series were prepared, as described previously [19]. The first agar tube was inoculated with 100 μl of an environmental sample, and the subsequently inoculated test tubes were treated as described for liquid cultures (see cultivation of bacteria). Dilution ...
... environmental isolates, agar shake dilution series were prepared, as described previously [19]. The first agar tube was inoculated with 100 μl of an environmental sample, and the subsequently inoculated test tubes were treated as described for liquid cultures (see cultivation of bacteria). Dilution ...
Isolation and characterization of cDNA clones encoding
... no hybridization was detected with RNA isolated from control plants (Fig. IB, lane 2). With RNA from TMV infected leaves, however, a single transcript of approximately 700 nucleotides is readily detectable (Fig. IB, lane 1 ) . The size of this RNA is sufficient to encode a protein of 18 kD. Isolatio ...
... no hybridization was detected with RNA isolated from control plants (Fig. IB, lane 2). With RNA from TMV infected leaves, however, a single transcript of approximately 700 nucleotides is readily detectable (Fig. IB, lane 1 ) . The size of this RNA is sufficient to encode a protein of 18 kD. Isolatio ...
PowerPoint on Blast Fasta
... the search algorithm will find a wrong solution. • If a solution is found, that solution is guaranteed to be valid, but it may not be optimal. ...
... the search algorithm will find a wrong solution. • If a solution is found, that solution is guaranteed to be valid, but it may not be optimal. ...
Molecular Systematics of the Genus Zoogloea and Emendation of
... was a direct measurement of nucleotides derived from genomic DNAs and thus should provide more accurate data. The rhodoquinone-defective 2. ramigera IAM 12669 and IAM 12670 showed much lower G + C contents than did the authentic Zoogloea strains. DNA-DNA hybridization assays showed that the RQ-&cont ...
... was a direct measurement of nucleotides derived from genomic DNAs and thus should provide more accurate data. The rhodoquinone-defective 2. ramigera IAM 12669 and IAM 12670 showed much lower G + C contents than did the authentic Zoogloea strains. DNA-DNA hybridization assays showed that the RQ-&cont ...
Sathgudi Sweet orange
... Osb) was done in the Nagri village of Chittor, district which is about 40 km away from Tirupati in Andhra Pradesh during November 2006. Two orchards of sathgudi sweet orange which was having approximately 440 plants were surveyed for presence of mosaic and greening disease symptoms. Symptomatic leav ...
... Osb) was done in the Nagri village of Chittor, district which is about 40 km away from Tirupati in Andhra Pradesh during November 2006. Two orchards of sathgudi sweet orange which was having approximately 440 plants were surveyed for presence of mosaic and greening disease symptoms. Symptomatic leav ...
Document
... (Clark and Kao, 1991). Last, the S locus of Lycopersicon peruvianum has been shown by genetic mapping to be located close to the centromere of chromosome I (Bernatzky, 1993), and the S locus of Petunia hybrida has been shown by fluorescence in situ hybridization to be located close to the centromere ...
... (Clark and Kao, 1991). Last, the S locus of Lycopersicon peruvianum has been shown by genetic mapping to be located close to the centromere of chromosome I (Bernatzky, 1993), and the S locus of Petunia hybrida has been shown by fluorescence in situ hybridization to be located close to the centromere ...