A New Species of Actinomycete, Amycolata alni
... Institute of Biochemistry and Physiology of Microorganisms, Pushchino, USSR, 1985). According to the identification keys and species descriptions that were available at that time (3, 14, 15), these isolates were assigned to the species Nocardia autotrophica (20; Y. B. Malishkaite, Diss. C. Sci. thes ...
... Institute of Biochemistry and Physiology of Microorganisms, Pushchino, USSR, 1985). According to the identification keys and species descriptions that were available at that time (3, 14, 15), these isolates were assigned to the species Nocardia autotrophica (20; Y. B. Malishkaite, Diss. C. Sci. thes ...
Annex 1
... table 1. Modifications, for example, methylated bases, may be described as set forth in paragraph 48, table 2, but shall not be shown explicitly in the nucleotide sequence; (iv) "amino acids" are those L-amino acids commonly found in naturally occurring proteins and are listed in paragraph 48, table ...
... table 1. Modifications, for example, methylated bases, may be described as set forth in paragraph 48, table 2, but shall not be shown explicitly in the nucleotide sequence; (iv) "amino acids" are those L-amino acids commonly found in naturally occurring proteins and are listed in paragraph 48, table ...
HMW glutenin subunits in multiploid Aegilops species: composition
... mobility similar to, or larger than, that of the 1Dx2.2 subunit was observed. However, it was not known if these subunits were encoded by the D genome component in the relevant Aegilops species. ( ) Genomic PCR reactions. Based on the above SDS-PAGE analysis, we chose Ae. ventricosa as a model speci ...
... mobility similar to, or larger than, that of the 1Dx2.2 subunit was observed. However, it was not known if these subunits were encoded by the D genome component in the relevant Aegilops species. ( ) Genomic PCR reactions. Based on the above SDS-PAGE analysis, we chose Ae. ventricosa as a model speci ...
Editing Multiple Alignments
... Generating multiple alignments Pairwise sequence alignment is easy with sufficiently closely related sequences. Below a certain level of identity sequence alignment may become uncertain : twilight zone for aa sequences ~ 30%. ...
... Generating multiple alignments Pairwise sequence alignment is easy with sufficiently closely related sequences. Below a certain level of identity sequence alignment may become uncertain : twilight zone for aa sequences ~ 30%. ...
A Simple Introduction to NCBI BLAST
... sequence homology allows us to identify putative genes in a novel sequence. It also allows us to determine if a gene or a protein is related to other known genes or proteins. BLAST is popular because it can quickly identify regions of local similarity between two sequences. More importantly, BLAST u ...
... sequence homology allows us to identify putative genes in a novel sequence. It also allows us to determine if a gene or a protein is related to other known genes or proteins. BLAST is popular because it can quickly identify regions of local similarity between two sequences. More importantly, BLAST u ...
Molecular Systematics & Evolution of Microorganisms
... If the situation arises where a third sequence is aligned to the first two, then when a gap has to be introduced to improve the alignment, each of these two entities are treated as two single sequences. ...
... If the situation arises where a third sequence is aligned to the first two, then when a gap has to be introduced to improve the alignment, each of these two entities are treated as two single sequences. ...
Classification and Phylogenetic Analysis of the cAMP
... nonredundant database using human RI␣ as the query sequence and a BLOSUM62 weight matrix (Henikoff and Henikoff 1992). Sequences identified in this first stage were used as query sequences for subsequent searches. Sequences unequivocally identified as corresponding to cAMP-dependent kinase regulator ...
... nonredundant database using human RI␣ as the query sequence and a BLOSUM62 weight matrix (Henikoff and Henikoff 1992). Sequences identified in this first stage were used as query sequences for subsequent searches. Sequences unequivocally identified as corresponding to cAMP-dependent kinase regulator ...
Full Text
... amino acid groups. If the residues all fall within an amino acid group, that group is said to apply to that position in the motif, and the position is said to be a consensus position. For example, if all residues in a given position are either valine or leucine, then the amino acid group [VLI] appli ...
... amino acid groups. If the residues all fall within an amino acid group, that group is said to apply to that position in the motif, and the position is said to be a consensus position. For example, if all residues in a given position are either valine or leucine, then the amino acid group [VLI] appli ...
Isoenzyme Loci in Brown Trout (Salmo Trutta L.)
... amount of genetic differentiation within a small geographic area. There was also strong evidence of two genetically distinct populations of brown trout coexisting in a single very small lake. However, these results were based only on fish from four different lakes examined at ten electrophoretically ...
... amount of genetic differentiation within a small geographic area. There was also strong evidence of two genetically distinct populations of brown trout coexisting in a single very small lake. However, these results were based only on fish from four different lakes examined at ten electrophoretically ...
Survey - University of Washington
... Summary of BLAST • Dynamic programming is O(nm), where n is the length of the query and m is the size of the database. • BLAST is O(m). • BLAST produces an index of the query sequence that allows fast matching to the database. • Relative to Smith-Waterman, BLAST can produce false negatives; i.e., h ...
... Summary of BLAST • Dynamic programming is O(nm), where n is the length of the query and m is the size of the database. • BLAST is O(m). • BLAST produces an index of the query sequence that allows fast matching to the database. • Relative to Smith-Waterman, BLAST can produce false negatives; i.e., h ...
Document
... Each alignment among two or more nucleotide or amino acid sequences is an explicit assumption about their common evolutionary history Comparisons among related sequences have facilitated many advances in understanding their information content and their function Techniques for sequence alignment and ...
... Each alignment among two or more nucleotide or amino acid sequences is an explicit assumption about their common evolutionary history Comparisons among related sequences have facilitated many advances in understanding their information content and their function Techniques for sequence alignment and ...
Enterococcus lactis sp. nov., from Italian raw milk cheeses
... The isolates were Gram-positive, spherical or ovoid cells occurring in pairs or short chains, catalase-negative, nonmotile and non-endospore-forming. The isolates grew on KAA agar, showed b-haemolysis on defibrinated sheep blood and were able to grow in litmus milk, in which they caused reduction an ...
... The isolates were Gram-positive, spherical or ovoid cells occurring in pairs or short chains, catalase-negative, nonmotile and non-endospore-forming. The isolates grew on KAA agar, showed b-haemolysis on defibrinated sheep blood and were able to grow in litmus milk, in which they caused reduction an ...
and Mountain Lions (Puma concolor) in North America
... Several previous reports have described the phylogenetic relationships among FIVs based upon nucleotide sequence alignments from short regions of the pol or env genes (4, 6–10). Additional studies comparing phylogenetic relationships among fulllength sequences of lion lentivirus (LLV) isolates acros ...
... Several previous reports have described the phylogenetic relationships among FIVs based upon nucleotide sequence alignments from short regions of the pol or env genes (4, 6–10). Additional studies comparing phylogenetic relationships among fulllength sequences of lion lentivirus (LLV) isolates acros ...
Database search and pairwise alignments
... Each alignment among two or more nucleotide or amino acid sequences is an explicit assumption about their common evolutionary history Comparisons among related sequences have facilitated many advances in understanding their information content and their function Techniques for sequence alignment and ...
... Each alignment among two or more nucleotide or amino acid sequences is an explicit assumption about their common evolutionary history Comparisons among related sequences have facilitated many advances in understanding their information content and their function Techniques for sequence alignment and ...
Carotene genes from cassava-pchavarriaga.pdf
... Genomic fragments for psy (figure 3a) and cDNA fragments for psy and pdes (figure 4a and 5a) were obtained testing consensus primers both in Per 297 and CM523-7 cultivars. Those fragments show high degree of similarity compared to known clones for psy and pdes (figure 4b and 5b). When we used BlastX ...
... Genomic fragments for psy (figure 3a) and cDNA fragments for psy and pdes (figure 4a and 5a) were obtained testing consensus primers both in Per 297 and CM523-7 cultivars. Those fragments show high degree of similarity compared to known clones for psy and pdes (figure 4b and 5b). When we used BlastX ...
SEQUENCE COMPLIANCE SOUP TO NUTS
... – Learn about EFS at this website: http://www.uspto.gov/ebc/efs_help.html • Add the sequence listing to your EFS-Web submission • No paper copy or statement needed for initial filing – If filing in response to a Notice to Comply a statement that there is no new matter is needed. – Sequence listing i ...
... – Learn about EFS at this website: http://www.uspto.gov/ebc/efs_help.html • Add the sequence listing to your EFS-Web submission • No paper copy or statement needed for initial filing – If filing in response to a Notice to Comply a statement that there is no new matter is needed. – Sequence listing i ...
sequence compliance soup to nuts
... – Learn about EFS at this website: http://www.uspto.gov/ebc/efs_help.html • Add the sequence listing to your EFS-Web submission • No paper copy or statement needed for initial filing – If filing in response to a Notice to Comply a statement that there is no new matter is needed. – Sequence listing i ...
... – Learn about EFS at this website: http://www.uspto.gov/ebc/efs_help.html • Add the sequence listing to your EFS-Web submission • No paper copy or statement needed for initial filing – If filing in response to a Notice to Comply a statement that there is no new matter is needed. – Sequence listing i ...
Word Pro - Sezutsu.lwp
... chi-like sequence. In the Apf gene, the AGG amino acid triplet corresponds to a chi-like sequence. The near lack of chi in the Rff gene may be associated with the much lower content of Ala residue in the NPABs. Fibroins are important candidates for the production of transgenic silkworms that would s ...
... chi-like sequence. In the Apf gene, the AGG amino acid triplet corresponds to a chi-like sequence. The near lack of chi in the Rff gene may be associated with the much lower content of Ala residue in the NPABs. Fibroins are important candidates for the production of transgenic silkworms that would s ...
PDF - Stanford University
... trees. The phylogenetic relationships among the PR loci of the Ty families differ from the other three loci. In the PR tree the Ty3 sequences group together with the Ty1 and Ty2 families, while the Ty4 and Ty5 families form a separate clade. The differences between the PR tree and the other three tr ...
... trees. The phylogenetic relationships among the PR loci of the Ty families differ from the other three loci. In the PR tree the Ty3 sequences group together with the Ty1 and Ty2 families, while the Ty4 and Ty5 families form a separate clade. The differences between the PR tree and the other three tr ...
A Study of Phylogenetic Relationships and Homology of
... overall species phenotype. For example, both humans and chimpanzees have many similar anatomical characters and functions, so we might expect their proteins to be similar, regardless of whether they are genealogically related or not. However, we can compare the sequences of basic genes that are used ...
... overall species phenotype. For example, both humans and chimpanzees have many similar anatomical characters and functions, so we might expect their proteins to be similar, regardless of whether they are genealogically related or not. However, we can compare the sequences of basic genes that are used ...
- Universiti Malaysia Kelantan
... Protease are among the most valuable catalysts used in food, pharmaceutical and detergent industries because they hydrolyze peptide bonds in aqueous environments and synthesize peptide bonds in microaqueous environments (Ogino et al., 1999). Microbial proteases dominate the commercial applications, ...
... Protease are among the most valuable catalysts used in food, pharmaceutical and detergent industries because they hydrolyze peptide bonds in aqueous environments and synthesize peptide bonds in microaqueous environments (Ogino et al., 1999). Microbial proteases dominate the commercial applications, ...
Sequence variation in the dihydrofolate reductase
... Dihydrofolate reductase-thymidylate synthase (DHFR-TS ) and trypanothione reductase (TR ) are important enzymes for the metabolism of protozoan parasites from the family Trypanosomatidae (e.g. Trypanosoma spp ., Leishmania spp. ) that are targets of current drug-design studies. Very limited informat ...
... Dihydrofolate reductase-thymidylate synthase (DHFR-TS ) and trypanothione reductase (TR ) are important enzymes for the metabolism of protozoan parasites from the family Trypanosomatidae (e.g. Trypanosoma spp ., Leishmania spp. ) that are targets of current drug-design studies. Very limited informat ...
The nucleotide sequence and derived amino acid
... isozymes, suggest different physiological roles for each isozyme. Although some limited sequence data have been obtained for the CA III isozyme of the rat (Carter et al., 1981), and what appears to be CA II cDNA from the mouse (Curtis, 1983), no extensive nucleotide or amino acid sequences are as ye ...
... isozymes, suggest different physiological roles for each isozyme. Although some limited sequence data have been obtained for the CA III isozyme of the rat (Carter et al., 1981), and what appears to be CA II cDNA from the mouse (Curtis, 1983), no extensive nucleotide or amino acid sequences are as ye ...
Phenotypic and Genotypic Comparisons among Strains of the
... temperature (10). Hyperchromicity was calculated as the percent increase in A260. Determination of M. The molecular weight of the bacterial genome (M) was determined based on initial renaturation rate of fragmented DNA, recorded spectrophotometrically (11). The renaturation temperatures of DNA from ...
... temperature (10). Hyperchromicity was calculated as the percent increase in A260. Determination of M. The molecular weight of the bacterial genome (M) was determined based on initial renaturation rate of fragmented DNA, recorded spectrophotometrically (11). The renaturation temperatures of DNA from ...