Automatic annotation of organellar genomes with DOGMA
... gions (IRA and IRB) involve a large inverted repeat. The other two regions are the large and small single-copy regions. In general, gene content and order are highly conserved [9], although in some groups numerous structural rearrangements have been identified [4]. Some genes can contain large intr ...
... gions (IRA and IRB) involve a large inverted repeat. The other two regions are the large and small single-copy regions. In general, gene content and order are highly conserved [9], although in some groups numerous structural rearrangements have been identified [4]. Some genes can contain large intr ...
Array CGH for detection of chromosome imbalance
... “benign” CNVs – published as present in normal individuals and /or common in our population known regions (eg microdeletion syndrome loci) unknown CNVs – not in DGV ...
... “benign” CNVs – published as present in normal individuals and /or common in our population known regions (eg microdeletion syndrome loci) unknown CNVs – not in DGV ...
Location and Characterization of the Bovine Herpesvirus Type 2
... type 2 (bovine herpes mammillitis virus) thymidine kinase (TK) gene have been determined. The genomic location of the TK gene was found to be in a similar position to that of herpes simplex virus. The coding region consists of 918 bases, which is slightly smaller in length than other reported herpes ...
... type 2 (bovine herpes mammillitis virus) thymidine kinase (TK) gene have been determined. The genomic location of the TK gene was found to be in a similar position to that of herpes simplex virus. The coding region consists of 918 bases, which is slightly smaller in length than other reported herpes ...
HTSanalyzeR - Florian Markowetz
... available via the Bioconductor project (Gentleman et al., 2004). The software interfaces directly with existing HTS pre-processing ...
... available via the Bioconductor project (Gentleman et al., 2004). The software interfaces directly with existing HTS pre-processing ...
Text S6
... (PKS) and non-ribosomal synthetase (NRPS) domain structures. Adenylation domain specificities were predicted using the program NRPSpredictor [24]. As the specificity of several A-domains could not be determined this way, several of these domains were exemplarily aligned with the phenylalanine-activa ...
... (PKS) and non-ribosomal synthetase (NRPS) domain structures. Adenylation domain specificities were predicted using the program NRPSpredictor [24]. As the specificity of several A-domains could not be determined this way, several of these domains were exemplarily aligned with the phenylalanine-activa ...
Exam 2 Mcbio 316 Answers
... Missense suppressors will insert the incorrect amino acid at many different sites in many proteins, resulting in nonfunctional proteins, mutant proteins with harmful functions, or improperly folded proteins which are degraded by proteases. Thus, missense suppressors cause extensive damage to cellula ...
... Missense suppressors will insert the incorrect amino acid at many different sites in many proteins, resulting in nonfunctional proteins, mutant proteins with harmful functions, or improperly folded proteins which are degraded by proteases. Thus, missense suppressors cause extensive damage to cellula ...
ChimPipe Documentation Release v0.8.0 Bernardo Rodríguez-Martín, Emilio Palumbo and Sarah Djebali
... • Cancer genomics. It is very well know that the generation of fusion genes through chromosomal rearrangements is a major driver in certain types of cancer. These are hydrid genes formed from two previously separate genes that encode altered proteins with abnormal activity. Thus, the identification ...
... • Cancer genomics. It is very well know that the generation of fusion genes through chromosomal rearrangements is a major driver in certain types of cancer. These are hydrid genes formed from two previously separate genes that encode altered proteins with abnormal activity. Thus, the identification ...
Intra-genomic 16S rRNA gene heterogeneity in
... between gene copies are relatively frequent and may be underestimated due to limitations of genome assembly programs. Despite the relatively frequent occurrence of intra–genomic 16S rRNA gene heterogeneity, the extent of sequence divergence is typically quite small (mean = 0.2%) and generally much l ...
... between gene copies are relatively frequent and may be underestimated due to limitations of genome assembly programs. Despite the relatively frequent occurrence of intra–genomic 16S rRNA gene heterogeneity, the extent of sequence divergence is typically quite small (mean = 0.2%) and generally much l ...
Genetically modified organisms dating game
... match are recorded on worksheets individually and/or on a class computer and projected onto a screen. Unsuccessful competitors return their cards to the bottom of the pile of that colour and go back to their seats in the class. 9. Four new volunteers are picked for the next round. The role of the ch ...
... match are recorded on worksheets individually and/or on a class computer and projected onto a screen. Unsuccessful competitors return their cards to the bottom of the pile of that colour and go back to their seats in the class. 9. Four new volunteers are picked for the next round. The role of the ch ...
Text S1. Predicted Functional RNAs Within Coding Regions
... the two predictions). Furthermore, all predictions used in the stringent dataset were also required to be greater than 10 nucleotides in length. EvoFold Program The EvoFold program was used to predict fRNA secondary structures in postWGD species of yeast, and it took approximately one month to comp ...
... the two predictions). Furthermore, all predictions used in the stringent dataset were also required to be greater than 10 nucleotides in length. EvoFold Program The EvoFold program was used to predict fRNA secondary structures in postWGD species of yeast, and it took approximately one month to comp ...
Evolution
... access via the Internet. Why is this information important? Being able to identify the precise location and sequence of human genes will allow us to better understand genetic diseases. In addition, learning about the sequence of genes in other species helps us understand evolutionary relationships a ...
... access via the Internet. Why is this information important? Being able to identify the precise location and sequence of human genes will allow us to better understand genetic diseases. In addition, learning about the sequence of genes in other species helps us understand evolutionary relationships a ...
Genetics 101 - VHL Alliance
... There are 23 pairs of chromosomes in each cell of our bodies. Chromosomes contain sections of DNA called genes that tell our body how to grow and develop. We all have two copies of each chromosome and two copies of each gene. There is a 50% chance of inheriting an individual gene from a pare ...
... There are 23 pairs of chromosomes in each cell of our bodies. Chromosomes contain sections of DNA called genes that tell our body how to grow and develop. We all have two copies of each chromosome and two copies of each gene. There is a 50% chance of inheriting an individual gene from a pare ...
The HapMap project and its application to genetic
... across the genome is necessary for enabling whole-genome association studies. Recent studies conducted at various levels of resolution have all shown that the extent of LD in different parts of the genome is highly variable, averaging 5–20 kb but extending up to hundreds of kilobases.3–5 Variability ...
... across the genome is necessary for enabling whole-genome association studies. Recent studies conducted at various levels of resolution have all shown that the extent of LD in different parts of the genome is highly variable, averaging 5–20 kb but extending up to hundreds of kilobases.3–5 Variability ...
Full Text - Harvard University
... genomic sequence than exons. But what was the function of this prevalent genomic feature? Since introns are removed from the nascent RNA, they marked a departure from early studies of genetic code. Introns did not fit easily into the simple, linear transfer of genetic informa tion from DNA to mRNA ...
... genomic sequence than exons. But what was the function of this prevalent genomic feature? Since introns are removed from the nascent RNA, they marked a departure from early studies of genetic code. Introns did not fit easily into the simple, linear transfer of genetic informa tion from DNA to mRNA ...
you can view a sample report here.
... (SAMe) concentrations. function) gene, your methylfolate requirement is higher. Reduced levels of methylfolate lead to decreased Normal Variants Found production of neurotransmitters, reduced conversion of homocysteine to methionine, and reduced s-adenosylMultiple have considered riboflavin and show ...
... (SAMe) concentrations. function) gene, your methylfolate requirement is higher. Reduced levels of methylfolate lead to decreased Normal Variants Found production of neurotransmitters, reduced conversion of homocysteine to methionine, and reduced s-adenosylMultiple have considered riboflavin and show ...
Recent advances in assessing gene flow between
... exchange after the population started to separate. ...
... exchange after the population started to separate. ...
Polling in Cattle - South Devon Herd Book Society
... Similarly to polling there are two forms of the gene that control whether an animal has scurs. Again these are inherited from the parents with the offspring receiving one copy from the Sire and one from the Dam. The two forms are: SC – This form causes scurring and the capitalisation indicates that ...
... Similarly to polling there are two forms of the gene that control whether an animal has scurs. Again these are inherited from the parents with the offspring receiving one copy from the Sire and one from the Dam. The two forms are: SC – This form causes scurring and the capitalisation indicates that ...
Introduction Exercise 1: Measuring gene expression
... Gene expression levels don't mean at to much unless they're put in a relative context. In the previous exercise we found that ANXA2 had the highest readcount but what if this gene has a high readcount in any sample? To understand what expression levels mean in a relative context we need normalizatio ...
... Gene expression levels don't mean at to much unless they're put in a relative context. In the previous exercise we found that ANXA2 had the highest readcount but what if this gene has a high readcount in any sample? To understand what expression levels mean in a relative context we need normalizatio ...
Notes S1 Simple sequence repeats and transposable elements
... Notes S2 The mitochondrial genome annotation and analysis The mitochondrial genome (mt-genome) of H. irregulare, TC32-1, comprises 114193 bp and has a circular structure and a mean GC-content of 22.8%. Open reading frames (ORFs) longer than 150 bp were identified using ORFfinder, codon usage table 4 ...
... Notes S2 The mitochondrial genome annotation and analysis The mitochondrial genome (mt-genome) of H. irregulare, TC32-1, comprises 114193 bp and has a circular structure and a mean GC-content of 22.8%. Open reading frames (ORFs) longer than 150 bp were identified using ORFfinder, codon usage table 4 ...
Human Gene Nomenclature Quiz by Laura King, MA, ELS
... Genotypes: Genotype comprises the set of alleles in an individual. Genotypes are italicized, for example, CYP2D6*4A/*5. When a genotype is being expressed in terms of nucleotides (eg, a polymorphism), italics and other punctuation are not needed, for example, MTHFR677 TT genotype. When the indivi ...
... Genotypes: Genotype comprises the set of alleles in an individual. Genotypes are italicized, for example, CYP2D6*4A/*5. When a genotype is being expressed in terms of nucleotides (eg, a polymorphism), italics and other punctuation are not needed, for example, MTHFR677 TT genotype. When the indivi ...
excercise handout
... 1. Provide findings for 8 genes as best you can. For at least 3 genes, all information should be fully completed based on having read 1+ article as thoroughly as you can. For the other 5 genes, the required information should be filled out as best you can. If you have more than 8 genes, you will get ...
... 1. Provide findings for 8 genes as best you can. For at least 3 genes, all information should be fully completed based on having read 1+ article as thoroughly as you can. For the other 5 genes, the required information should be filled out as best you can. If you have more than 8 genes, you will get ...
J. Bacteriol.-2012-H
... and disseminated disease in both immunocompetent and immunocompromised individuals. NTM species previously considered nonpathogenic have now been shown to cause disease in humans. Mycobacterium vaccae, a rapidly growing and yellow-pigmented NTM, was first isolated, described, and named in 1962 (4). ...
... and disseminated disease in both immunocompetent and immunocompromised individuals. NTM species previously considered nonpathogenic have now been shown to cause disease in humans. Mycobacterium vaccae, a rapidly growing and yellow-pigmented NTM, was first isolated, described, and named in 1962 (4). ...
Copy-number variation
Copy-number variations (CNVs)—a form of structural variation—are alterations of the DNA of a genome that results in the cell having an abnormal or, for certain genes, a normal variation in the number of copies of one or more sections of the DNA. CNVs correspond to relatively large regions of the genome that have been deleted (fewer than the normal number) or duplicated (more than the normal number) on certain chromosomes. For example, the chromosome that normally has sections in order as A-B-C-D might instead have sections A-B-C-C-D (a duplication of ""C"") or A-B-D (a deletion of ""C"").This variation accounts for roughly 13% of human genomic DNA and each variation may range from about one kilobase (1,000 nucleotide bases) to several megabases in size. CNVs contrast with single-nucleotide polymorphisms (SNPs), which affect only one single nucleotide base.