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Cloning and sequence analysis of cnaA gene encoding the catalytic
Cloning and sequence analysis of cnaA gene encoding the catalytic

Metabolism of Members of the Spiroplasmataceae
Metabolism of Members of the Spiroplasmataceae

... contaminating and interfering enzymes, or perhaps, in certain cases, failure to induce an inducible enzyme. Furthermore, we cannot be certain that the reaction sequences which we detected in our in vitro studies with cell-free extracts are functional in actively metabolizing whole cells; such functi ...
Bridging differences in concepts of selection between farmers
Bridging differences in concepts of selection between farmers

... Plant and animal breeding had an important individuals based on phenotypic variation within influence on the development of Darwin's ideas a population, (2) genetic response, or change in of evolution. For example, in his copy of a pam- the genetic structure of a population due to a phlet titled The ...
Thesis - Max Planck Institut für Festkörperforschung
Thesis - Max Planck Institut für Festkörperforschung

... covalent bonds, their benefit lies in their flexibility and reversibility. Annealing can heal structural errors to obtain thermodynamic equilibrium. One of the most widely used strategies to build up supramolecular architectures is based on the coordination of metal atoms with organic ligands [27, 2 ...
Rapid and accurate cancer somatic mutation
Rapid and accurate cancer somatic mutation

... with clinical outcomes and prognosis. This application requires the flexibility to conduct current as well as retrospective studies. ...
International Journal of Antimicrobial Agents Mechanism of drug
International Journal of Antimicrobial Agents Mechanism of drug

... pathogen is limited because the enteritis caused by this organism is not as frequent as that caused by Vibrio cholerae [5]. However, in recent years it is being isolated with greater frequency from patients with cholera-like illness, many of which display multiple drug resistance [5–8]. There are se ...
Chemistry 433 BIOCHEMISTRY LABORATORY MANUAL
Chemistry 433 BIOCHEMISTRY LABORATORY MANUAL

... This course is intended to introduce you to some of the most widely used experimental procedures in biochemistry, including protein purification and characterization, enzyme assays and kinetics, and DNA isolation and manipulation. You will also gain some familiarity with some of the types of equipme ...
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... In many cases, particularly the more complex ones, at-scene investigators may have a myriad of items to collect for submission to the laboratory. The excerpt on the following page was paraphrased from the book Mute Witnesses: Trace Evidence Analysis, by Max M. Houck, and should be kept in mind when ...
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Structure and mechanism of action of a novel

... members of Staphylococcus and Streptococcus species, some of which are important human pathogens. Consequently, it is possible that iPGMs could be a target for rational design of a novel antibiotic. Interestingly, some bacteria have genes for both an iPGM and a dPGM, but only one enzyme comprises th ...
Biology II Final Exam Practice
Biology II Final Exam Practice

... 76. A geneticist refers to the appearance of an individual as his or her ____________________, while the genetic makeup is called the genotype. 77. Genes on separate chromosomes follow Mendel’s law of ____________________. 78. According to Mendel’s law of ____________________, two alleles for each t ...
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Structure, expression and chromosomal location of the Oct

... other members of the POU family. After digestion with PstI, a restriction fragment length polymorphism (RFLP) was identified in C57BL/6 (B6) versus AKR and A / J . This allowed use of the congenic chromosomes listed in Fig. 1A (Flaherty et al., 1990). Whereas, the B6.K1 and B6.K3 recombinants place ...
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Molecular cloning and biochemical characterization of a

... DAF. The enzymatic activity was initially analyzed at different pH values (pH 5±9) and the highest activity was obtained at pH 6 for both samples (data not shown). Under these experimental conditions it was possible to detect LOX activity both in microsomal and soluble fractions, although the solubl ...
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... often sterile. Siblings of the stressed flies can be used to rear the next generation, but because siblings are only 50 percent identical genetically, this procedure provides a slower selective response. Alternative methods have therefore been developed. For example, selection for high “knockdown te ...
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Structure and Function of Large Bio Molecules

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Isolation, Characterization, and Annotation: The Search for Novel

... to the invention of antibiotics. In 1919, D’Herelle, a French scientist, the phage to attach to used phage to treat dysentery. Within a matter of years D’Herelle had a specific bacteria. commercial laboratory in Paris that produced phage preparations, and research spread throughout Europe, to the So ...
T. Takahashi, B. C. Vo Ngo, L. Xiao, G. Arya, and M. J. Heller
T. Takahashi, B. C. Vo Ngo, L. Xiao, G. Arya, and M. J. Heller

... While considerable attempts have been made to recreate the high turnover rates of enzymes using synthetic enzyme mimics, most have failed and only a few have produced minimal reaction rates that can barely be considered catalytic. One particular approach we have focused on is the use of short-sequen ...
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CS790 – Introduction to Bioinformatics

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Department of Botany and Zoology, University of Florida, Gainesville
Department of Botany and Zoology, University of Florida, Gainesville

... genetic composition (De Meeus et al., 1993). A source–sink system in a sense combines elements of hard and soft selection; selection in the source might not have much impact on population size there because of density dependence, but in the sink where densities are assumed low, if selection can incr ...
The Inductive Theory of Natural Selection
The Inductive Theory of Natural Selection

... Models of selection: prelude. Improvement by trial and error is a very simple concept. But applying that simple concept to real problems can be surprisingly subtle and difficult. Mathematics can help, but it can also hinder. One must be clear about what one wants from the mathematics and the limitat ...
22nd EMC Full Program - 25th Enzyme Mechanisms Conference
22nd EMC Full Program - 25th Enzyme Mechanisms Conference

... biophysical, and cellular methods. A model of RTK activation is proposed to describe how a RTK response may be matched to a biological context through enzymatic properties. In addition, two highly optimized cMet inhibitors currently in clinical trials were used to evaluate the balance between overal ...
Directional Positive Selection on an Allele of Arbitrary
Directional Positive Selection on an Allele of Arbitrary

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Deoxyribozyme



Deoxyribozymes, also called DNA enzymes, DNAzymes, or catalytic DNA, are DNA oligonucleotides that are capable of catalyzing specific chemical reactions, similar to the action of other biological enzymes, such as proteins or ribozymes (enzymes composed of RNA).However, in contrast to the abundance of protein enzymes in biological systems and the discovery of biological ribozymes in the 1980s,there are no known naturally occurring deoxyribozymes.Deoxyribozymes should not be confused with DNA aptamers which are oligonucleotides that selectively bind a target ligand, but do not catalyze a subsequent chemical reaction.With the exception of ribozymes, nucleic acid molecules within cells primarily serve as storage of genetic information due to its ability to form complementary base pairs, which allows for high-fidelity copying and transfer of genetic information. In contrast, nucleic acid molecules are more limited in their catalytic ability, in comparison to protein enzymes, to just three types of interactions: hydrogen bonding, pi stacking, and metal-ion coordination. This is due to the limited number of functional groups of the nucleic acid monomers: while proteins are built from up to twenty different amino acids with various functional groups, nucleic acids are built from just four chemically similar nucleobases. In addition, DNA lacks the 2'-hydroxyl group found in RNA which limits the catalytic competency of deoxyribozymes even in comparison to ribozymes.In addition to the inherent inferiority of DNA catalytic activity, the apparent lack of naturally occurring deoxyribozymes may also be due to the primarily double-stranded conformation of DNA in biological systems which would limit its physical flexibility and ability to form tertiary structures, and so would drastically limit the ability of double-stranded DNA to act as a catalyst; though there are a few known instances of biological single-stranded DNA such as multicopy single-stranded DNA (msDNA), certain viral genomes, and the replication fork formed during DNA replication. Further structural differences between DNA and RNA may also play a role in the lack of biological deoxyribozymes, such as the additional methyl group of the DNA base thymidine compared to the RNA base uracil or the tendency of DNA to adopt the B-form helix while RNA tends to adopt the A-form helix. However, it has also been shown that DNA can form structures that RNA cannot, which suggests that, though there are differences in structures that each can form, neither is inherently more or less catalytic due to their possible structural motifs.
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