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News in DNA/RNA electrophoresis: Midori
News in DNA/RNA electrophoresis: Midori

... A unique combination of a number of proprietary plasmids digested with appropriate restriction enzymes and PCR products to yield 13 fragments, suitable for use as molecular weight standards for agarose gel electrophoresis. The DNA marker (MWD1) includes fragments ranging from 250-10,000 base pairs. ...
Chapter 12 Notes
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... - The nucleotides in a strand of DNA are joined by _____________ formed between the ___________ and __________________ groups. - The bases stick out ___________________ from the nucleotide chain. - The nucleotides can be joined together _____________________, any sequence of bases is possible Solvin ...
CYTOGENETICS AND MEDICAL GENETICS IN THE 1960s
CYTOGENETICS AND MEDICAL GENETICS IN THE 1960s

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... Previously, we prepared DNA for spotting in 80% DMSO and 0.3 g/l nitrocellulose. However, we subsequently evaluated spotting solutions containing various concentrations of dimethyl formamide, formamide or DMSO, with or without nitrocellulose. We determined that nitrocellulose was not required for ...
Copying DNA: Southern Blotting
Copying DNA: Southern Blotting

... 2 The mixture is cooled, and primers bind to strands 3 DNA polymerase adds nucleotides to strands, producing two complementary strands. 4 The procedure is repeated starting at step 1 . ...
Name Class Date Skills Worksheet Look
Name Class Date Skills Worksheet Look

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Biology: Unit 13 Directed Reading Guide
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Linkage map - Cloudfront.net
Linkage map - Cloudfront.net

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... 2. cells from fetus or surrounding fluid - grow to many cells in nutrients = cell culture 3. check for DNA pattern associated with the disorder B. Gene Therapy - insertion of normal genes into the human cells to correct genetic disorders Ex: first trials on patients with cystic fibrosis - hopefully ...
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Introduction to high-‐throughput experiments and data analysis

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Intro to DNA and Genetics

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Comparative genomic hybridization



Comparative genomic hybridization is a molecular cytogenetic method for analysing copy number variations (CNVs) relative to ploidy level in the DNA of a test sample compared to a reference sample, without the need for culturing cells. The aim of this technique is to quickly and efficiently compare two genomic DNA samples arising from two sources, which are most often closely related, because it is suspected that they contain differences in terms of either gains or losses of either whole chromosomes or subchromosomal regions (a portion of a whole chromosome). This technique was originally developed for the evaluation of the differences between the chromosomal complements of solid tumor and normal tissue, and has an improved resoIution of 5-10 megabases compared to the more traditional cytogenetic analysis techniques of giemsa banding and fluorescence in situ hybridization (FISH) which are limited by the resolution of the microscope utilized.This is achieved through the use of competitive fluorescence in situ hybridization. In short, this involves the isolation of DNA from the two sources to be compared, most commonly a test and reference source, independent labelling of each DNA sample with a different fluorophores (fluorescent molecules) of different colours (usually red and green), denaturation of the DNA so that it is single stranded, and the hybridization of the two resultant samples in a 1:1 ratio to a normal metaphase spread of chromosomes, to which the labelled DNA samples will bind at their locus of origin. Using a fluorescence microscope and computer software, the differentially coloured fluorescent signals are then compared along the length of each chromosome for identification of chromosomal differences between the two sources. A higher intensity of the test sample colour in a specific region of a chromosome indicates the gain of material of that region in the corresponding source sample, while a higher intensity of the reference sample colour indicates the loss of material in the test sample in that specific region. A neutral colour (yellow when the fluorophore labels are red and green) indicates no difference between the two samples in that location.CGH is only able to detect unbalanced chromosomal abnormalities. This is because balanced chromosomal abnormalities such as reciprocal translocations, inversions or ring chromosomes do not affect copy number, which is what is detected by CGH technologies. CGH does, however, allow for the exploration of all 46 human chromosomes in single test and the discovery of deletions and duplications, even on the microscopic scale which may lead to the identification of candidate genes to be further explored by other cytological techniques.Through the use of DNA microarrays in conjunction with CGH techniques, the more specific form of array CGH (aCGH) has been developed, allowing for a locus-by-locus measure of CNV with increased resolution as low as 100 kilobases. This improved technique allows for the aetiology of known and unknown conditions to be discovered.
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