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single cells
single cells

... described methods is the site of attachment of the fluorescent label. In other systems, the fluorescent label is attached to the base in nucleotides and consequently the labels remain attached after nucleotide incorporation, which leads to an increase in background noise. Moreover, incorporation of ...
DNA
DNA

A: Diagnostic Technologies for Genetic Diseases
A: Diagnostic Technologies for Genetic Diseases

... Diagnosing genetic diseases requires a partnership of two types of technologies: those for sampling bodily tissues and fluids, and those for analyzing such samples obtained before and after birth. Although fetal imaging is not tissue analysis in the strict sense, it will he discussed here as a techn ...
Human Genomics
Human Genomics

... that strand to a halt because a modified nucleotide does not allow any subsequent nucleotide to become bonded to it. Provided that the process is carried out on a large enough scale, the synthesis of a complementary strand will have been stopped at every possible nucleotide position along the DNA te ...
11-GeneTech
11-GeneTech

... 5. The single-stranded ends of DNA fragments created by restriction endonucleases are said to be ‘sticky’ because they: A. bind to restriction endonuclease-type enzymes. B. stick to the outside of bacteria and then are taken up into the cells. C. have a short stick-like appearance when viewed with a ...
chip-based digital pcr
chip-based digital pcr

Genome structure, analysis and evolufion Lecture 1
Genome structure, analysis and evolufion Lecture 1

... Since   2000   the   scien?fic   and   popular   press   has   reported   and   celebrated   the   ‘complete’   sequencing   of   the   first   insect   (Drosophila   melanogaster)   and   plant   genome   (Arabidopsis   thaliana)   and   the   hum ...
Purification/UV-Vis Analysis Polymerase Chain Reaction (PCR
Purification/UV-Vis Analysis Polymerase Chain Reaction (PCR

... populations located in Ohio and Pennsylvania. Thirty-three samples, representing a large variety in terms of age and sex, were procured via parks. DNA was originally obtained from liver tissue, but the experimental procedures can utilize other sources such as hair or blood samples. Polymerase Chain ...
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... Incubate the nitrocellulose with a (radioactive) probe containing unique DNA (or RNA) that encodes for the gene of interest – at least 20 nucleotides in length a) Sometimes many probes are needed because the amino acid sequence in question can be encoded by numerous nucleotide sequences (this is cal ...
Recombinant DNA and Genetic Engineering
Recombinant DNA and Genetic Engineering

... Of viral proteins and viral gene Replication. Some host cell DNA May attach to replicated viral DNA (red/blue). 5 New viruses assemble; host cell DNA is carried by “hybrid viruses.” ...
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Efficient whole-genome DNA methylation analysis of the Human

... influences normal organism development and many diseases including cancer. Profiling the DNA methylation patterns of higher organisms is challenging because methylation patterns vary between tissues and with developmental state, hence there are far more methylomes to be analyzed than genomes. Furthe ...
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PCR labwork 2 ENG
PCR labwork 2 ENG

... ever discovered. This method is very sensitive and specific with a great degree of flexibility. PCR allows a single, short region of a DNA molecule to be amplified to extremely high copy numbers using a simple set of reagents and a basic heating and cooling (denaturing and annealing) cycle. PCR requ ...
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Discovery of Recombinant DNA

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... indicated restriction enzymes and DNA blots were prepared according to standard protocols. The blots were hybridized with a 32P labeled probe in 50% (v/v) formamide at 42ºC. Final blot washes for SlSERK3B and SlSERK1 were performed in 1X SSC, 0.1% SDS at 42ºC and at 65ºC, respectively. The SlSERK3B ...
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From Hard Drives to Flash Drives to DNA Drives

... long strand and the amount of information that it contains is astonishing). In a recent experiment, Church et al7 took one of their own books (nearly 54,000-words-long, including 11 images) and used a computer to convert it into a bit stream (they initially thought about encoding Moby Dick). They en ...
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DNA Extraction from Gram negative bacteria on plates and

Chromosomes and Diseases - Faculty of Science at Bilkent
Chromosomes and Diseases - Faculty of Science at Bilkent

Exclusive Highly-Specific Kits and Antibodies for DNA
Exclusive Highly-Specific Kits and Antibodies for DNA

... family of oxygenases. 5-hydroxymethylcytosine may represent a new pathway to demethylate DNA involving a repair mechanism converting hmC to C and, as such open up entirely new perspectives in epigenetic studies. Since its discovery in neuronal Purkinje, granule and ES cells, studies of this new modi ...
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article in press

Manipulating DNA - tools and techniques 2012
Manipulating DNA - tools and techniques 2012

...  The gene is copied and placed into a bacterial plasmid  The plasmid is inserted into the bacterial host cell  Inside bacterial host cell the plasmid and the gene make twenty copies of itself  The bacterial cell copies itself every twenty minutes by ...
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Comparative genomic hybridization



Comparative genomic hybridization is a molecular cytogenetic method for analysing copy number variations (CNVs) relative to ploidy level in the DNA of a test sample compared to a reference sample, without the need for culturing cells. The aim of this technique is to quickly and efficiently compare two genomic DNA samples arising from two sources, which are most often closely related, because it is suspected that they contain differences in terms of either gains or losses of either whole chromosomes or subchromosomal regions (a portion of a whole chromosome). This technique was originally developed for the evaluation of the differences between the chromosomal complements of solid tumor and normal tissue, and has an improved resoIution of 5-10 megabases compared to the more traditional cytogenetic analysis techniques of giemsa banding and fluorescence in situ hybridization (FISH) which are limited by the resolution of the microscope utilized.This is achieved through the use of competitive fluorescence in situ hybridization. In short, this involves the isolation of DNA from the two sources to be compared, most commonly a test and reference source, independent labelling of each DNA sample with a different fluorophores (fluorescent molecules) of different colours (usually red and green), denaturation of the DNA so that it is single stranded, and the hybridization of the two resultant samples in a 1:1 ratio to a normal metaphase spread of chromosomes, to which the labelled DNA samples will bind at their locus of origin. Using a fluorescence microscope and computer software, the differentially coloured fluorescent signals are then compared along the length of each chromosome for identification of chromosomal differences between the two sources. A higher intensity of the test sample colour in a specific region of a chromosome indicates the gain of material of that region in the corresponding source sample, while a higher intensity of the reference sample colour indicates the loss of material in the test sample in that specific region. A neutral colour (yellow when the fluorophore labels are red and green) indicates no difference between the two samples in that location.CGH is only able to detect unbalanced chromosomal abnormalities. This is because balanced chromosomal abnormalities such as reciprocal translocations, inversions or ring chromosomes do not affect copy number, which is what is detected by CGH technologies. CGH does, however, allow for the exploration of all 46 human chromosomes in single test and the discovery of deletions and duplications, even on the microscopic scale which may lead to the identification of candidate genes to be further explored by other cytological techniques.Through the use of DNA microarrays in conjunction with CGH techniques, the more specific form of array CGH (aCGH) has been developed, allowing for a locus-by-locus measure of CNV with increased resolution as low as 100 kilobases. This improved technique allows for the aetiology of known and unknown conditions to be discovered.
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