PPTX - Tandy Warnow
... • MetaPhyler, MetaPhlAn, and mOTU are marker-based techniques (but use different marker genes). ...
... • MetaPhyler, MetaPhlAn, and mOTU are marker-based techniques (but use different marker genes). ...
Handout - 6 - CM - Outline Genomic Model for HL7 V2
... This panel code does not carry values in its OBX-5 It defines the structure within the LOINC data base. It will not be included in the message since we are planning to use OBX-4 content to define the hierarchy rather than by nested OBRs The code for the CWE is the ID specified for the variant in the ...
... This panel code does not carry values in its OBX-5 It defines the structure within the LOINC data base. It will not be included in the message since we are planning to use OBX-4 content to define the hierarchy rather than by nested OBRs The code for the CWE is the ID specified for the variant in the ...
MOLECULAR CYTOGENETIC ANALYSES IN WHEAT AND
... make detailed studies on the degree of relationship between the various plant species and varieties and on their genome structures. In recent decades many results have been achieved in this field. Basic breeding material with more favourable agronomic properties have been developed carrying genes or ...
... make detailed studies on the degree of relationship between the various plant species and varieties and on their genome structures. In recent decades many results have been achieved in this field. Basic breeding material with more favourable agronomic properties have been developed carrying genes or ...
MGF 110-13L/14L overlap
... Trunc - 014 [MGF 110-7L/MGF 360-6L Fusion Protein]: This gene is a fusion between the MGF 110-7L ortholog and MGF 360-6L. The amino terminus of this fusion is not shown since it is outside the scope of this diagram. The annotated ortholog for this gene is: “Truncated MGF 360 protein” which has been ...
... Trunc - 014 [MGF 110-7L/MGF 360-6L Fusion Protein]: This gene is a fusion between the MGF 110-7L ortholog and MGF 360-6L. The amino terminus of this fusion is not shown since it is outside the scope of this diagram. The annotated ortholog for this gene is: “Truncated MGF 360 protein” which has been ...
Codon usage in the Mycobacterium tuberculosis corn
... al., GenBank accession no. U15140) may contain as many as four frameshifts, and so was excluded. In the same database entry, there is an O R F ('ORFX') located between rpm] and rpsM, and annotated as encoding a ribosomal protein. The putative product has no similarity to any database entry, and furt ...
... al., GenBank accession no. U15140) may contain as many as four frameshifts, and so was excluded. In the same database entry, there is an O R F ('ORFX') located between rpm] and rpsM, and annotated as encoding a ribosomal protein. The putative product has no similarity to any database entry, and furt ...
microbial genetics
... transfer occurs through transformation and conjugation. Often it is useful to transfer a nontransmissible plasmid to a specific host cell. It is possible to transfer the purified DNA as long as a genetic selection is available for recipients that possess the plasmid. Uptake of purified DNA is called ...
... transfer occurs through transformation and conjugation. Often it is useful to transfer a nontransmissible plasmid to a specific host cell. It is possible to transfer the purified DNA as long as a genetic selection is available for recipients that possess the plasmid. Uptake of purified DNA is called ...
Comparative Analysis of Structural Diversity and
... We used searches of the EST database at NCBI to identify new cases of mitochondrial genes that have been transferred to the nucleus (see Methods). We obtained genomic DNA sequences by PCR amplification and sequencing for most of the genes to identify intron positions. Forty-two transferred genes wer ...
... We used searches of the EST database at NCBI to identify new cases of mitochondrial genes that have been transferred to the nucleus (see Methods). We obtained genomic DNA sequences by PCR amplification and sequencing for most of the genes to identify intron positions. Forty-two transferred genes wer ...
- Lab Fabiana Perocchi
... Figure 1 Measuring allelic expression on a tiling array. (A) The array contains 25-mer probes (black and blue) that tile both strands of the genome of S288c with a probe offset of 8 bp and a 4-bp shift between the two strands. The array also contains probes (red) complementary to the YJM789 sequence ...
... Figure 1 Measuring allelic expression on a tiling array. (A) The array contains 25-mer probes (black and blue) that tile both strands of the genome of S288c with a probe offset of 8 bp and a 4-bp shift between the two strands. The array also contains probes (red) complementary to the YJM789 sequence ...
No more than 14: the end of the amphioxus Hox cluster
... the embryos, whilst genes at the 5’ end of the cluster pattern the posterior [3]. Mammalian genomes contain four Hox clusters, with a selection of 13 Hox paralogous groups (PG1 to PG13), originated by cluster duplication from a single Hox cluster early in vertebrate evolution [4]. Following duplicat ...
... the embryos, whilst genes at the 5’ end of the cluster pattern the posterior [3]. Mammalian genomes contain four Hox clusters, with a selection of 13 Hox paralogous groups (PG1 to PG13), originated by cluster duplication from a single Hox cluster early in vertebrate evolution [4]. Following duplicat ...
Repair of Site-Specific DNA Double-Strand Breaks in
... cells due to loss of acentric fragments and instability of centric break ends. Living organisms have evolved a range of DSB repair mechanisms. DSBs can be repaired correctly to restore the prebreak status or result in genome variability by conversion, inversion, insertion, deletion, or translocation ...
... cells due to loss of acentric fragments and instability of centric break ends. Living organisms have evolved a range of DSB repair mechanisms. DSBs can be repaired correctly to restore the prebreak status or result in genome variability by conversion, inversion, insertion, deletion, or translocation ...
Origin and Evolution of a New Gene Descended From alcohol
... group of Drosophila; however, several results from molecular analyses of thisgene conflict with currently held notions of molecular evolution. Perhaps the most difficult observations to reconcile with the pseudogene hypothesis are that the hypothetical replacement sites of Adh-qh evolve only slightl ...
... group of Drosophila; however, several results from molecular analyses of thisgene conflict with currently held notions of molecular evolution. Perhaps the most difficult observations to reconcile with the pseudogene hypothesis are that the hypothetical replacement sites of Adh-qh evolve only slightl ...
the contribution of gene movement to the two rules of speciation
... introduce these mechanisms below, returning to the evidence for each in the next section. There are three mechanisms by which genes can move between chromosomes. The first involves the simple movement of a gene from one chromosome to another with no duplicative intermediate. Movement of large chromo ...
... introduce these mechanisms below, returning to the evidence for each in the next section. There are three mechanisms by which genes can move between chromosomes. The first involves the simple movement of a gene from one chromosome to another with no duplicative intermediate. Movement of large chromo ...
A set reduction and pattern matching problem motivated by Allele
... box) allowing extension of the primers by DNA polymerase. 1) After one iteration the process has created two copies of the original sequence (navy boxes). One copy begins with the left primer, and the other begins with the right primer. 2) A second iteration doubles the number of sequences by duplic ...
... box) allowing extension of the primers by DNA polymerase. 1) After one iteration the process has created two copies of the original sequence (navy boxes). One copy begins with the left primer, and the other begins with the right primer. 2) A second iteration doubles the number of sequences by duplic ...
Genomic Databases for Tomato
... Information on tomato ESTs and a non-redundant sequence set derived from ESTs are provided by INSD and other public databases. ESTs generated from cDNA libraries give us information on transcript sequences and expression patterns in tissues and organs at various developmental stages. Currently, INSD ...
... Information on tomato ESTs and a non-redundant sequence set derived from ESTs are provided by INSD and other public databases. ESTs generated from cDNA libraries give us information on transcript sequences and expression patterns in tissues and organs at various developmental stages. Currently, INSD ...
The Mitochondrial Genome of Chara vulgaris
... hypothesis (Malek et al., 1997; Malek and Knoop, 1998; Qiu et al., 1998; Beckert et al., 1999; Pruchner et al., 2001). The alternative hypothesis that all of the introns in the four completely sequenced land plant mtDNAs were present in the common ancestor of all land plants and that subsequently ma ...
... hypothesis (Malek et al., 1997; Malek and Knoop, 1998; Qiu et al., 1998; Beckert et al., 1999; Pruchner et al., 2001). The alternative hypothesis that all of the introns in the four completely sequenced land plant mtDNAs were present in the common ancestor of all land plants and that subsequently ma ...
Gene regulation in three dimensions
... Gene regulation has traditionally mainly been viewed as a 1D and possibly 2D process. In the 1D view the genome is seen as a linear string of nucleotides, where one or more transcription factors (TFs) bind to transcription factor binding sites (TFBSs), and thereby regulate the expression of genes th ...
... Gene regulation has traditionally mainly been viewed as a 1D and possibly 2D process. In the 1D view the genome is seen as a linear string of nucleotides, where one or more transcription factors (TFs) bind to transcription factor binding sites (TFBSs), and thereby regulate the expression of genes th ...
Transcript
... maize was teosinte, and it was right in front of us all along. But many varieties of teosinte grow throughout Mexico and Central America, and humans have lived there for thousands of years. So, where and when did they first transform teosinte into maize? Doebley’s team set out to find the answer. Th ...
... maize was teosinte, and it was right in front of us all along. But many varieties of teosinte grow throughout Mexico and Central America, and humans have lived there for thousands of years. So, where and when did they first transform teosinte into maize? Doebley’s team set out to find the answer. Th ...
General remarks: A biodesign is a man made, mostly computer
... construct can repeatedly only isolated from E. coli with sequence errors and not be completely sequence verified because of continued sequence defects of prior sequence verified sequences in part. Sequence defects can be identified as silent or non-silent point mutations or micro-deletions as well a ...
... construct can repeatedly only isolated from E. coli with sequence errors and not be completely sequence verified because of continued sequence defects of prior sequence verified sequences in part. Sequence defects can be identified as silent or non-silent point mutations or micro-deletions as well a ...
B-Bolivia, an Allele of the Maize b1 Gene with Variable Expression
... experiments demonstrated that B-Bolivia is not expressed in the seed when transmitted through the male. When transmitted through the female the proportion of kernels pigmented and the intensity of pigment varied. Molecular characterization of B-Bolivia demonstrated that it shares the first 530 bp of ...
... experiments demonstrated that B-Bolivia is not expressed in the seed when transmitted through the male. When transmitted through the female the proportion of kernels pigmented and the intensity of pigment varied. Molecular characterization of B-Bolivia demonstrated that it shares the first 530 bp of ...
Evolution of the Actin Gene Family in Testate Lobose Amoebae
... The evolution of actin gene families is characterized by independent expansions and contractions across the eukaryotic tree of life. Here, we assess diversity of actin gene sequences within three lineages of the genus Arcella, a free-living testate (shelled) amoeba in the Arcellinida. We established ...
... The evolution of actin gene families is characterized by independent expansions and contractions across the eukaryotic tree of life. Here, we assess diversity of actin gene sequences within three lineages of the genus Arcella, a free-living testate (shelled) amoeba in the Arcellinida. We established ...
Archives of Microbiology
... of the VnfDG products are altered by this gene fusion, nor whether the unique addition of 21 nucleotides in the vnfDG fusion area of Anabaena sp. CH1 is of functional signiWcance. In a neighbor-joining analysis of all available deduced VnfDG sequences, those from cyanobacteria clustered next to thos ...
... of the VnfDG products are altered by this gene fusion, nor whether the unique addition of 21 nucleotides in the vnfDG fusion area of Anabaena sp. CH1 is of functional signiWcance. In a neighbor-joining analysis of all available deduced VnfDG sequences, those from cyanobacteria clustered next to thos ...
Optimizing Restriction Site Placement for Synthetic
... recognition site or restriction site. Unique restriction sites within a given target are particularly prized, as they cut the sequence unambiguously in exactly one place. Many techniques for manipulating DNA make use of unique restriction sites [6, 7]. In particular, subcloning is an important metho ...
... recognition site or restriction site. Unique restriction sites within a given target are particularly prized, as they cut the sequence unambiguously in exactly one place. Many techniques for manipulating DNA make use of unique restriction sites [6, 7]. In particular, subcloning is an important metho ...
Sequence analysis of 16S rRNA, gyrB and catA genes and DNA
... approximately 1200 bp PCR product besides the approximately 1500 bp specific product, making direct sequencing impossible. Sequence analyses gave interesting results. The reported 0.2 % difference between 16S rRNA gene sequences of type strains of R. qingshengii and R. jialingiae was not found, beca ...
... approximately 1200 bp PCR product besides the approximately 1500 bp specific product, making direct sequencing impossible. Sequence analyses gave interesting results. The reported 0.2 % difference between 16S rRNA gene sequences of type strains of R. qingshengii and R. jialingiae was not found, beca ...
Sequence analysis of 16S rRNA, gyrB and catA genes and DNA
... approximately 1200 bp PCR product besides the approximately 1500 bp specific product, making direct sequencing impossible. Sequence analyses gave interesting results. The reported 0.2 % difference between 16S rRNA gene sequences of type strains of R. qingshengii and R. jialingiae was not found, beca ...
... approximately 1200 bp PCR product besides the approximately 1500 bp specific product, making direct sequencing impossible. Sequence analyses gave interesting results. The reported 0.2 % difference between 16S rRNA gene sequences of type strains of R. qingshengii and R. jialingiae was not found, beca ...
Identification of New Genes Involved in Meiosis by a Genetic Screen
... involved in meiosis. To that end, I have carried out a genome-wide screen in the budding yeast S. cerevisiae. I have identified sporulation temperature sensitive zmm-like truncation mutants by using mini-transposon mediated random insertional mutagenesis approach. To confirm that the observed sporul ...
... involved in meiosis. To that end, I have carried out a genome-wide screen in the budding yeast S. cerevisiae. I have identified sporulation temperature sensitive zmm-like truncation mutants by using mini-transposon mediated random insertional mutagenesis approach. To confirm that the observed sporul ...
Transposable element
A transposable element (TE or transposon) is a DNA sequence that can change its position within the genome, sometimes creating or reversing mutations and altering the cell's genome size. Transposition often results in duplication of the TE. Barbara McClintock's discovery of these jumping genes earned her a Nobel prize in 1983.TEs make up a large fraction of the C-value of eukaryotic cells. There are at least two classes of TEs: class I TEs generally function via reverse transcription, while class II TEs encode the protein transposase, which they require for insertion and excision, and some of these TEs also encode other proteins. It has been shown that TEs are important in genome function and evolution. In Oxytricha, which has a unique genetic system, they play a critical role in development. They are also very useful to researchers as a means to alter DNA inside a living organism.