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Identification and Analysis of Arabidopsis Expressed Sequence
Identification and Analysis of Arabidopsis Expressed Sequence

... AtCR20-1 correspond to regions of the genome annotated as containing no ORF. EST contig analysis indicates that they could be part of the AtCR20-1 transcript and that what was reported as AtCR20-1 is a partial clone of 758 nt, whereas the full-length cDNA is approximately 1.5 kb. Although the sequen ...
ERF/AP2 Subfamily A3 and ER/AP2 Subfamily A6 Genes
ERF/AP2 Subfamily A3 and ER/AP2 Subfamily A6 Genes

... pre-globular stage ...
A recurrent deletion syndrome at chromosome bands 2p11
A recurrent deletion syndrome at chromosome bands 2p11

Megavirus - Mister Gui
Megavirus - Mister Gui

... There are many weird viruses on this planet, but none weirder–in a fundamentally important way– than a group known as the giant viruses. For years, they were hiding in plain sight. They were so big–about a hundred times bigger than typical viruses–that scientists mistook them for bacteria. But a clo ...
Qualitative Analysis of Regulatory Graphs: A Computational Tool
Qualitative Analysis of Regulatory Graphs: A Computational Tool

... with source gi such that l = sinf (T ); consequently, any non trivial expression level of gene gi corresponds to a threshold from which an interaction (with source gi ) becomes functional (thus for each gene, the maximum level equals at most the number of interactions exerted by this gene). Let Ij b ...
Quorum Sensing in Gram-negative and Gram-positive
Quorum Sensing in Gram-negative and Gram-positive

... appropriate phenotype. It has been established that such cell dependent phenomenon is exhibited by over 30 species of Gram-negative bacteria. Though LuxI/LuxR systems are used by a variety of bacteria for quorum sensing, there exists a layer of complexity in the LuxI/LuxR systems. ...
Aucun titre de diapositive - Universidad Nacional De Colombia
Aucun titre de diapositive - Universidad Nacional De Colombia

... database and the new produces clusters are renamed)Gene Index ID change. Primary consensus for each cluster in FASTA format. Alignments from Phrap in GDE (Genetic Data Environment) format. Sequence variations and sub-consensus (from CRAW processing). ...
Letter Gene Survival and Death on the Human Y
Letter Gene Survival and Death on the Human Y

Identification and characterisation of Bacillus subtilis as cellulase
Identification and characterisation of Bacillus subtilis as cellulase

... in the presence of glucose and nitrate, some anaerobic growth can occur (Claus ...
Pattern of diversity in the genomic region near the
Pattern of diversity in the genomic region near the

... selection and diversity in a crop species. The tb1 gene is largely responsible for a major-effect quantitative trait locus on chromosome 1 that controls differences in plant architecture between maize and its wild relative, teosinte (Z. mays subsp. mexicana and subsp. parviglumis) (8–11). The tb1 ge ...
Plant Molecular Biology
Plant Molecular Biology

... tri-melseries o f hybrids into five classes. In addition, the recombination site o f at least one representative o f each class was localized exactly by nucleotide sequencing. In Fig. 2 the positions o f these determined recombination sites are indicated together with the deduced protein sequences o ...
Molecular Cloning of Clostridium Perfringens Type B Vaccine Strain
Molecular Cloning of Clostridium Perfringens Type B Vaccine Strain

... indicates its high sensitivity. It is unstable in high ...
Methylation Dynamics in the Early Mammalian Embryo: Implications
Methylation Dynamics in the Early Mammalian Embryo: Implications

... A One-cell embryo during first mitosis. The maternal chromosomes are methylated in both sister chromatids and spatially separated from the fully demethylated paternal chromosomes. B Two-cell embryo in which one cell goes through second mitosis. The interphase nucleus exhibits a methylated maternal an ...
shERWOOD-UltramiR shRNA
shERWOOD-UltramiR shRNA

... To benchmark the shERWOOD algorithm design against the early generation TRC and Hannon Elledge (GIPZ) shRNA designs, the Hannon lab (Knott et al 2014) performed a large scale screen using each of these designs to target 2200 genes that were likely to impact growth and survival based on gene ontology ...
Supplementary Tutorial - WashU Epigenome Browser
Supplementary Tutorial - WashU Epigenome Browser

... item. The “Zoom in” operation can be performed on this image by clicking on the image and dragging the cursor over the region of interest. When submitting gene sets, the user can define which gene features parts should be displayed using the drop-down menu. Ready-made gene features can be selected f ...
A familial inverted duplication/deletion of 2p25.1–25.3
A familial inverted duplication/deletion of 2p25.1–25.3

Methylation Dynamics in the Early Mammalian Embryo - Beck-Shop
Methylation Dynamics in the Early Mammalian Embryo - Beck-Shop

Large-scale association studies
Large-scale association studies

... I’m in CHARGE I’m in CHARGE I’m in CHARGE I’m in CHARGE I’m in CHARGE I’m in CHARGE I’m in CHARGE ...
How different is anatomy?
How different is anatomy?

...  None of the model organism databases used standard terminology to describe biological function  Drosophila sequence was imminent  Largest genome sequenced at that time  Two weeks, 3 dozen scientists, all new software  How could we organize the annotation? ...
Multifactorial Traits
Multifactorial Traits

... or even thousands of individuals. Using Mendel’s laws, geneticists can predict the probability that certain family members will inherit single-gene conditions. Most more common traits and diseases, though, seem to “run in families” with no obvious pattern, or they occur sporadically, with just one c ...
Investigation of the premelanosome protein
Investigation of the premelanosome protein

... Re-sequencing of parts of the rabbit PMEL gene and identification of intronic polymorphisms To identify polymorphisms that could be useful to evaluate their possible co-segregation with the black-blue spotted phenotype in the F1 families, fragments of the rabbit PMEL gene including 4 out of 11 exons ...
Evolution at the Subgene Level: Domain Rearrangements in
Evolution at the Subgene Level: Domain Rearrangements in

... events retaining ancestral architectures in the duplicated copies. We provide a catalog of ∼9,000 genes that undergo domain rearrangement across nine sequenced species, along with possible mechanisms for their formation. These results dramatically expand on evolution at the subgene level and offer s ...
Chapter 12
Chapter 12

... he laid the groundwork for future genetic studies. But we have learned that things are often more complex: • Over time genes accumulate differences and new alleles arise. • There may be more than two alleles for one character. ...
How to use KAIKObase Version 3.1.0
How to use KAIKObase Version 3.1.0

... * GeneViewer : gene information viewer based on the gene viewer of KAIKOGAAS. * Bombyx Trap DataBase : Bombyx gene function database by transgenic works using GAL4 system. * KAIKO 2DDB : proteomic data of various developmental stages and tissues of silkworm. * KAIKOGAAS : An integrated database and ...
introduction
introduction

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Pathogenomics

Pathogen infections are among the leading causes of infirmity and mortality among humans and other animals in the world. Until recently, it has been difficult to compile information to understand the generation of pathogen virulence factors as well as pathogen behaviour in a host environment. The study of Pathogenomics attempts to utilize genomic and metagenomics data gathered from high through-put technologies (e.g. sequencing or DNA microarrays), to understand microbe diversity and interaction as well as host-microbe interactions involved in disease states. The bulk of pathogenomics research concerns itself with pathogens that affect human health; however, studies also exist for plant and animal infecting microbes.
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