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Exclusion of a Role of Hearing Loss
Exclusion of a Role of Hearing Loss

... Exclusion of Cdh23 as a candidate gene in PPI and ASR The present QTL on chromosome 10 spans the cadherin 23 (Cdh23) gene locus and homozygous Cdh23753A (G to A transition at nucleotide 753 in exon 7; this base change causes the in-frame skipping of exon 7) alleles carried by the B6 inbred strain is ...
Multiple Avirulence Loci and Allele-Specific Effector
Multiple Avirulence Loci and Allele-Specific Effector

... Ravensdale et al., 2012), a domain involved in specificity and direct AVR protein binding (Dodds et al., 2006; Krasileva et al., 2010). Their allelic variants recognize naturally occurring variants of their cognate AVRs, ATR13 and AVRL567, respectively, where differences in recognition specificity bet ...
Cloning and Sequencing of a Gene from Bacillus
Cloning and Sequencing of a Gene from Bacillus

Title PPAR interprets a chromatin signature of - DR-NTU
Title PPAR interprets a chromatin signature of - DR-NTU

... Embryogenesis in PPARb-null mice has not been studied in detail, possibly because defects in placenta formation may complicate the analysis [15]; however, no gross gastrulation or differentiation defects have been reported to date. This gap suggests that either PPARb functions in early mouse embryog ...
Bacterial conjugation
Bacterial conjugation

... including penicillin, tetracycline, sulfanilamide, streptomycin, and chloramphenicol. This multiple-drugresistance phenotype was inherited as a single genetic package, and it could be transmitted in an infectious manner—not only to other sensitive Shigella strains, but also to other related species ...
Genome-Wide Dissection of Hybrid Sterility in
Genome-Wide Dissection of Hybrid Sterility in

... males at each generation was tested and scored by crossing them individually with Bu28 females; and only the third backcross (BC3) yielded fertile males in 80% of the families. Four of these families were utilized in subsequent analyses. We did not work further to BC3 families, because the following ...
Gene Conversion as a Source of Nucleotide Diversity in
Gene Conversion as a Source of Nucleotide Diversity in

... Papua New Guinea (Muz12). Among these strains we found 10 synonymous polymorphisms in falcipain A and 25 synonymous polymorphisms in falcipain B, and we found nine nonsynonymous polymorphisms in falcipain A and 37 nonsynonymous polymorphisms in falcipain B. The locations of the polymorphisms across ...
Allele Mining Strategies: Principles and Utilisation for Blast
Allele Mining Strategies: Principles and Utilisation for Blast

Extrapolation to the whole human genome
Extrapolation to the whole human genome

... the length of the closest matching human protein (i.e. with introns removed), or whether there is evidence of polyadenylation. We have applied our approach to chromosomes 21 and 22, the first parts of the human genome completely sequenced, finding 190 new pseudogene annotations beyond the 264 report ...
Genetic predisposition to sarcoidosis: another brick in the wall EDITORIAL
Genetic predisposition to sarcoidosis: another brick in the wall EDITORIAL

... relatively small increments in risk, thus confirming the multifactorial aetiology of the disease, and account for only a small proportion of familial clustering. A number of explanations for this missing heritability can be hypothesised, including: much larger numbers of common variants of smaller e ...
Using the Basic Local Alignment Search Tool (BLAST) - bio-bio-1
Using the Basic Local Alignment Search Tool (BLAST) - bio-bio-1

... databases, is fully described on the NCBI site map at http://www.ncbi.nlm.nih.gov/Sitemap/index.html. There are a number of variations of the BLAST program for comparing either nucleic acid or protein query sequences with nucleic acid or protein sequence databases. If necessary, the programs transla ...
Genetic testinG
Genetic testinG

Considerations for Analyzing Targeted NGS Data – HLA
Considerations for Analyzing Targeted NGS Data – HLA

...  Lots of similar genes and lots of very similar pseudegenes.  Duplicated segments can be more similar to each other within an individual than they are similar to the corresponding segments of the reference genome. ...
The ARG9 Gene Encodes the Plastid-Resident N
The ARG9 Gene Encodes the Plastid-Resident N

... the dark. Cosegregation of the slow-growth phenotype with the Arg⫹ trait was observed, suggesting that insertion of the ARG9 gene interrupts a gene controlling respiration. However, neither mutant was deficient for complex I activity, as determined by enzymatic measurement or in-gel staining (data n ...
Gene promoters dictate histone occupancy within genes
Gene promoters dictate histone occupancy within genes

The Human Genome Project – Part 2
The Human Genome Project – Part 2

... ▫ The organism should have phenotypic differences resulting from allele differences at two or more loci ...
Evaluation of the Y-Chromosome Structure
Evaluation of the Y-Chromosome Structure

... in population and evolutionary studies; however it is imperative that the most appropriate SNPs are meticulously selected for the purposes of forensic genetics since different SNPs can possibly define the same haplogroup (Sanchez et al. 2004). ...
Slides
Slides

... Mapping Structural Variation in Humans >1 kb segments - Structural Variations are Common 40% of the genome -Structural Variations are involved in phenotype variation and disease - Until recently most methods for detection were low resolution (>50 kb) ...
application of next generation sequencing in the diagnosis
application of next generation sequencing in the diagnosis

... found 9. The most common form of AS, with approximately 4 in every 5 cases, is inherited in an X-linked fashion. X linked carrier females usually show variable intermediate phenotype. Due to imbalances in random X inactivation the phenotype can vary even between family members. In case of FBH, the m ...
Basic Concepts of Bioinformatics
Basic Concepts of Bioinformatics

... So if we find a new gene in the human genome we compare it with the already found genes which are stored in the databases. Since there are large number of databases we cannot do sequence alignment for each and every sequence So heuristics must be used again. M.Alroy Mascrenghe ...
Localization of Three Genes in the Hook
Localization of Three Genes in the Hook

... nucleus with which DNA is associated is represented by the 300- 1000 discrete areas within the nucleus where DNA replication takes place, termed "replication foci" [10-12]. These domains may be related to the association of both transcription [13-17] and replication [18-201 with the nuclear matrix, ...
B1 SHA - you and your genes
B1 SHA - you and your genes

... Name one environmental variation you have? What p_____ is made by the instructions on our genes? Why are we different from each other? ...
Requirements for Human Medical Genome
Requirements for Human Medical Genome

... laboratories undertaking the performance and implementation of human genetic testing utilising massively parallel sequencing (MPS) for all applications (ie. single gene, panel of genes, somatic testing, whole exome or whole genome or non-invasive prenatal screening) also known as next generation seq ...
A natural chimeric yeast containing genetic material from three species
A natural chimeric yeast containing genetic material from three species

... between these two species (Nicoletti et al., 1994 ; Ooi et al., 1985). The ATP9 genes in the isolates analysed were also found to be 228 bp long (Fig. 2). The amino acid sequences were identical in all cases, but several silent substitutions were observed. The ATP9 gene sequences of Saccharomyces sp ...
Personnel changes should be notified to GMSO
Personnel changes should be notified to GMSO

...  consider animal species infected by GMO and its pathogenicity within these species  potential for genetic transfer between GMM and organisms in environment  products of gene expression  stability (phenotypic and genotypic)  capacity of GMM to establish, disseminate and/or displace other organi ...
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Pathogenomics

Pathogen infections are among the leading causes of infirmity and mortality among humans and other animals in the world. Until recently, it has been difficult to compile information to understand the generation of pathogen virulence factors as well as pathogen behaviour in a host environment. The study of Pathogenomics attempts to utilize genomic and metagenomics data gathered from high through-put technologies (e.g. sequencing or DNA microarrays), to understand microbe diversity and interaction as well as host-microbe interactions involved in disease states. The bulk of pathogenomics research concerns itself with pathogens that affect human health; however, studies also exist for plant and animal infecting microbes.
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