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Query Results
Query Results

... Step 4: The user can choose to map the experimental tags against a subset of genomic tags upon a large amount of different features. For details see the help links or: Malig, R., Varela, C., Agosin, E. and Melo, F. (2006) Accurate and unambiguous tag-to-gene mapping in SAGE by a hierarchical gene a ...
Divergence with Gene Flow: Models and Data
Divergence with Gene Flow: Models and Data

F 1 - OpenWetWare
F 1 - OpenWetWare

... Concept 8.2 Allleles and Genes Interact To Produce Phenotypes The search for a true-breeding palomino A golden horse with a white mane and tail is known as a palomino. For many years the genetics of this color was a mystery. Suppose you’ve been hired by a horse breeder who wants to produce a line o ...
Original Article:
Original Article:

... electrophoresis (DGGE), using PCR products derived from amplification of selected key genes have been developed. Using DGGE DNA fragments, differing in only a single base substitution can be separated, which enables simultaneous detection of a large number of different bacterial populations in a sin ...
European Journal of Plant Pathology
European Journal of Plant Pathology

... Toth et al., 2001; Waleron et al., 2002). Similarly, amplified fragment length polymorphisms of genomic DNA reveal strain clusters consistent with subspecies identification. Phylogenetic trees constructed on the basis of 16S DNA sequences and on limited sequence data for the intergenic spacer region ...
DECIPHER project proposal v4
DECIPHER project proposal v4

... microdeletions/microduplications identified by genomic array analysis are very rare, and knowledge of polymorphic variants at this level is in its infancy, an international collaborative effort that allows pooling of data will advance understanding more rapidly. Exome or whole genome sequencing is n ...
mRNA Expression Analysis
mRNA Expression Analysis

... Two samples of MAQC human brain specimen were prepared using the Tag Profiling protocol. Each sample was run on a single flow cell lane. The resulting data, plotted as Sample 1 versus Sample 2, clearly demonstrate the outstanding reproducibility Tag Profiling delivers. Similar results were seen for ...
univERsity oF copEnhAGEn - Center for Protein Research
univERsity oF copEnhAGEn - Center for Protein Research

... Autoinducer-2 (AI-2) activity in dairy-relevant bacteria Among bacterial signalling molecules, the group called autoinducer-2 (AI-2) plays a unique role as it consists of the only presently known signalling molecules produced by both Gramnegative and Gram-positive bacteria, and presumably allows bac ...
Comparative Bacterial Genomics Genome Databases
Comparative Bacterial Genomics Genome Databases

... jor source of genomic sequence data. The website http://www.ncbi.nlm.nih.gov/genome/ browse/ lists thousands of Prokaryotic genome sequence projects. Each genome replicon is represented by a unique ID accession number, which is the same across major databases in the US (GenBank) Europe (EMBL) and t ...
40168_2015_115_MOESM1_ESM
40168_2015_115_MOESM1_ESM

... Air samplers are based on well-established aerosol collection mechanisms, such as impaction, interception, diffusion, electrostatic attraction, and gravitational settling. The same physical principles that are applied to non-biological particles can be applied to bioaerosol sampling in terms of sam ...
Paper Title (use style: paper title)
Paper Title (use style: paper title)

... natural selection. Thus, we can gain great deal of insight not only into how proteins and genes evolve during any time by the study of natural selection in species, but can also identify the genetic changes in species responsible for specific adaptations and mutations by identifying the patterns lef ...
The Rat Gene Map
The Rat Gene Map

... many as 150 yr ago. The rat is 1 of the 2 most widely used experimental animals in biomedical research; and a wealth of knowledge, primarily in physiology, is available (Jacob and others 1995; James and Lindpaintner 1997). Many genetically defined strains have been developed and maintained. Some str ...
GUEST COMMENTARY
GUEST COMMENTARY

... degenerate and that genes are read from a fixed starting point. In addition, and more to the point of this commentary, they described the first experimental use of a gene fusion. Actually, Crick et al. (12) did not isolate the gene fusion employed. Benzer and Champe (5) isolated this fusion, which i ...
Teaching and Learning Genetics with Drosophila 4. Pattern of
Teaching and Learning Genetics with Drosophila 4. Pattern of

... This is a very clear indication that three different genes determine these three characters of the fly. Therefore there is contradiction between the reciprocal test crosses and at a later stage we will discuss this. f) Each of these three characters namely thread arista, curled wing and striped thor ...
Impact of Tandem Repeats on the Scaling of Nucleotide Sequences
Impact of Tandem Repeats on the Scaling of Nucleotide Sequences

... so with the rapid completion of eukaryotic genomes. DNA sequences are composed of four nucleotides (A, G, C and T), with (A, G) representing the purines and (C, T) the pyrimidines. Repetitive nucleotide patterns form a prominent part of eukaryotic genomes and manifest themselves as tandem repeats. S ...
POCUS: mining genomic sequence annotation to predict disease
POCUS: mining genomic sequence annotation to predict disease

... requires no prior knowledge of the disease under study other than the location of two or more susceptibility loci. Similarly, we make no assumptions about the protein functions, expression, or any other characteristics associated with individual genes involved in the disease. We assume only that two ...
Massive Changes in Genome Architecture Accompany
Massive Changes in Genome Architecture Accompany

Guidelines for interpretation of 16S rRNA gene sequence
Guidelines for interpretation of 16S rRNA gene sequence

... of aerobic Gram-positive bacteria should be interpreted cautiously with basic phenotypic tests results, and additional biochemical tests or sequencing of additional gene loci are often required for definitive identification. Overall, using 3 % base difference as the cut-off, full and 527 bp 16S rRNA ...
Inheritance of Color And The Polled Trait
Inheritance of Color And The Polled Trait

... by the symbol “P”. The opposite condition, the presence of horns, is expressed as the “p” gene. The polled gene (P) is dominant to the horned gene (p). So when an animal inherits the dominant P gene from one parent and the recessive p gene from the other parent, it is the dominant P that shows up in ...
Designing Microarray Experiments
Designing Microarray Experiments

... what time an event occurs, or how gene expression changes over time? ...
Accounting for Non-Genetic Factors Improves the Power of eQTL
Accounting for Non-Genetic Factors Improves the Power of eQTL

... degree. Indeed, it is reasonable to expect that a substantial amount of the variation in gene expression is still due to non-genetic factors. Hence, eQTL studies face the challenge of distinguishing the expression variation due to genetic causes from the variation due to all non-genetic ones. Previo ...
16S rRNA characterization of Bacillus strain and its
16S rRNA characterization of Bacillus strain and its

... processes. It also entails a variety of genes responsible for microbial tolerance or defense against extreme conditions or xenobiotics present in the media. In a previous work, Bacillus spp. isolated from textile wastewater was exploited in terms of characterization, tolerance to pH, salinity, cold ...
Divergence with Gene Flow: Models and Data
Divergence with Gene Flow: Models and Data

... second, which kicks in when hybrids are produced, is epistatic incompatibility between alleles that have become fixed in different populations. The flip side of the BDM model is that if hybrids are produced and are not completely sterile, then it may happen that an allele that is fixed in one populatio ...
Phenotype and gene ontology enrichment as guides for
Phenotype and gene ontology enrichment as guides for

... The concept of a phenolog can also be useful when applied within a species. In C. elegans, not all phenotypes are equally easy to study. Although genomewide measurements can help elucidate the genetic network underlying a phenotype, devising screens to test which genes are functionally important can ...
Marker Saturation and Construction of a High
Marker Saturation and Construction of a High

... endonuclease enzymes require specific buffer for their optimal activities. However in the ...
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Pathogenomics

Pathogen infections are among the leading causes of infirmity and mortality among humans and other animals in the world. Until recently, it has been difficult to compile information to understand the generation of pathogen virulence factors as well as pathogen behaviour in a host environment. The study of Pathogenomics attempts to utilize genomic and metagenomics data gathered from high through-put technologies (e.g. sequencing or DNA microarrays), to understand microbe diversity and interaction as well as host-microbe interactions involved in disease states. The bulk of pathogenomics research concerns itself with pathogens that affect human health; however, studies also exist for plant and animal infecting microbes.
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