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12/02/2013 Proteins SBI 4UI February 2013 Biological Function Proteins represent an extremely diverse type of macromolecule, providing such functions as: catalyzing chemical reactions providing structural support transporting substances in the body enabling organisms to move regulating cellular processes providing defence from disease Amino Acids a protein is a macromolecule composed of amino acid monomers joined by a peptide bond an amino acid contains a central carbon atom that is bonded to four groups of atoms: a hydrogen atom an amino group a carboxyl group an R group Amino Acids the 20 amino acids can be divided into polar, non-polar and electrically charged groups of the 20, eight are essential amino acids, meaning they cannot be produced by the human body and must be consumed in the diet a polymer composed of many amino acids linked together is called a polypeptide Levels of Protein Organization There are four levels of protein organization: Primary Structure linear sequence of amino acids Secondary Structure since the peptide bonds are polar, H-bonding is possible polypeptides can form a coil-like shape called an alpha helix, or a folded fan like shape called a beta pleated sheet 1 12/02/2013 Levels of Protein Organization Levels of Protein Organization Tertiary Structure Quaternary Structure Levels of Protein Organization complex process of protein folding that determines 3D structure most occurs naturally as peptide bonds and different R groups interact mostly determined by hydrophobic effect may also involve the assistance of a class of proteins called molecular chaperones in proteins made up of a combination of polypeptides, each with their own primary, secondary and tertiary structures Denaturation under certain conditions (such as extreme temperature or chemical exposure), proteins can unfold in a process known as denaturation once a protein loses its normal 3-D shape, it is no longer able to perform its usual function 2