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Late Stage, Novel Antibiotics February 2015 Not for Distribution 3/3/2015 1 Third-party information included herein has been obtained from sources believed to be reliable, but the accuracy or completeness of such information is not guaranteed by, and should not be construed as a representation by Paratek Pharmaceuticals, Inc. (“Paratek”). The information contained in this presentation is accurate only as of the date hereof. “Paratek” and the Paratek logo are trademarks and service marks of Paratek. All other trademarks, service marks, trade names, logos and brand names identified in this presentation are the property of their respective owners. Forward-Looking Statements / Risk Factors This presentation contains forward-looking statements within the meaning of the Private Securities Litigation Reform Act of 1995. These statements include, but are not limited to, our strategy, future operations, future financial position, future revenue, projected costs, prospects, plans, objectives of management, potential use and effectiveness of our product candidates, expected market growth, the market opportunity for and the market acceptance of our product candidates, and the strength of our intellectual property portfolio. Examples of such statements include, but are not limited to, statements relating to the potential clinical risks and efficacy of, and market opportunities for, our product candidates, including Omadacycline and Sarecycline, the timing of clinical development of, and regulatory approval for, our product candidates, and the nature and timing of our collaboration agreements with respect to our product candidates. The words “anticipate,” “estimate,” “expect,” “believe,” “will” and similar terms and phrases are used to identify forward-looking statements. These statements are based on current information and belief and are not guarantees of future performance. Our ability to predict results, financial or otherwise, or the actual effect of future plans or strategies is inherently uncertain and actual results may differ from those predicted depending on a variety of factors. Our operations involve risks and uncertainties, many of which are outside our control, and any one of which, or a combination of which, could materially affect our results of operations or whether the forward-looking statements ultimately prove to be correct. We undertake no obligation to publicly update forward-looking statements, whether as a result of new information, future events or otherwise. Among the risks and uncertainties that could cause actual results to differ materially from those indicated by such forward-looking statements include delays in clinical trials or unexpected results; the failure of collaborators to perform obligations under our collaboration agreements; our failure to obtain regulatory approval for our product candidates; our products not gaining the anticipated acceptance in the marketplace or acceptance being delayed; our products not receiving reimbursement from healthcare payors; the effects of competition; our inability to protect our intellectual property and proprietary technology through patents and other means and the risks described in the “Risk Factors” sections of the Registration Statement on Form S-4 (file no 333-198464) and Paratek’s periodic reports filed with the SEC. 3/3/2015 2 Investment Highlights Proven Management Team Demonstrated large pharma interest Regulatory certainty: GAIN Act Growing pricing power 2 Late stage products: Omadacycline: Worldwide rights retained ABSSSI Phase 3: SPA + QIDP CABP Phase 3: SPA + QIDP UTI program in development + QIDP Sarecycline: Ex-U.S. rights retained Partnered with Actavis in U.S. Scarcity of other late-stage opportunities 3/3/2015 3 Decline in Antibiotic Development and Approvals 3/3/2015 4 Bacteria Always Win Bacterial resistance renders generic products obsolete Bacterial resistance costs society billions $USD > $20 billion USD/year in excess health care costs ~ $35 billion USD societal costs > 8 million additional patient days(1) REPORT TO THE PRESIDENT ON COMBATING (2) ANTIBIOTIC RESISTANCE Executive Office of the President President’s Council of Advisors on Science and Technology September 2014 (1) Roberts RR, Hota B, Ahmad I, Scott RD 2nd, Foster SD, Abbasi F, Schabowski S, Kampe LM, Ciavarella GG, Supino M, Naples J, Cordell R, Levy SB, Weinstein RA. Clin Infect Dis. 2009 Oct 15;49(8):1175-84. doi: 10.1086/605630 3/3/2015 5 U.S. Government Bills “on the Hill” Source: Guggenheim analyst report (Feb 2015) 3/3/2015 6 Aminomethylcyclines: A New Generation Tetracycline Overcomes These Mechanisms 7-Position Modification: Overcomes Efflux Pump R2 R3 H H N OH R1 N O OH O HO H O O NH2 9-Position Modification: Overcomes Ribosomal Protection 3/3/2015 7 Omadacycline: Comparable to Linezolid(1) Combined Data from Phase 2 and Phase 3 Non-Registration Trials Clinical Success Rate(3) Population(2) Omadacycline Linezolid Intent to Treat (ITT) 87.2% (156/179) 81.1% (146/180) Clinically Evaluable (CE) 97.5% (156/160) 94.2% (146/155) (1)The table shows combined data from our Phase 2 and Phase 3 non-registration trials, neither of which had a sufficient number of patients enrolled to determine statistical non-inferiority. (2)An Intent-to-Treat, or ITT, population refers to all enrolled subjects, as defined in the protocol, who received at least one dose of study drug. A Clinically Evaluable, or CE, population refers to all ITT subjects who had a qualifying infection, as defined in the protocol. (3)Clinical success refers to the continued improvement or complete resolution of baseline symptoms in the ITT or CE populations, assessed by the clinical investigator 10 to 17 days after the last dose of study drug. 3/3/2015 8 Phase 3 Trial Designs: Meet Both FDA and EMA Guidelines* ABSSSI 650 patients Omadacycline IV Omadacycline Oral Linezolid IV Linezolid Oral d1 d2-3 Up to d14 Early Response CABP 750 patients Omadacycline IV Omadacycline Oral Moxifloxacin IV Moxifloxacin Oral d1 d3-5 d3 – 5 Early Response d16-20 End of Treatment Post Treatment Evaluation, Test of Cure(1) Up to d14 d16-20 End of Treatment d5-14 Post Treatment Evaluation, Test of Cure(1) (*)Approval of 1 + 1 strategy in EU subject to scientific advice (1) TOC endpoint = Primary endpoint within EMA guidance 3/3/2015 9 Omadacycline: Promising Safety and Tolerability Profile ~700 individuals treated to-date No hERG channel effects: TQTc(1) study completed No effects on heart rate (HR) in patients Modest transient vagolytic HR effect in healthy volunteers No known metabolites No CYP interactions identified No DDI effects anticipated Modest GI effects No nausea-vomiting seen in IV-oral cross-over study No anticipated monitoring (1) Thorough QTc study 3/3/2015 10 Robust Commercial-Scale Formulations BOTH oral tablet and IV: at commercial-scale Stability profile (>2 years) for both oral and IV Oral tablet: meets FDA bioequivalence test Dosing regimens: IV: 100 mg every 12 hours for two doses: followed by 100 mg every 24 hr. Oral: 300 mg dosed as two 150 mg tablets every 24 hr. 3/3/2015 11 Omadacycline: Strong IP Through 2028 Protection through 2028 U.S. Base Composition of Matter plus anticipated patent term extension into 2028 OR U.S. Hatch Waxman plus GAIN Act extension into 2028 EU: 10 yrs. of market exclusivity expected Potential Pediatric exclusivity – adds additional 6 months 3/3/2015 12 Omadacycline: Proven Power of well tolerated Oral and IV Formulations Combined with the Importance of the “Big 3”* Indications Antibiotic Class Form Indications Blockbuster >$1.5B Peak Yr. (1) Levofloxacin Quinolone Oral & IV Skin, Respiratory Tract, UTI 2010 Co-Amoxy clav B-Lactam Oral & IV Skin, Upper Resp Tract, UTI 2011 Azithromycin Macrolide Oral & IV Upper & Lower Resp Tract 2011 Ciprofloxacin Quinolone Oral & IV Skin, Respiratory Tract UTI 2009 Clarithromycin Macrolide Oral & IV Upper & Lower Resp Tract 2011 History of “Concurrent” Blockbusters Oral Use ~Two-thirds of Total Revenues * Skin, Respiratory , UTI (1) IMS Data 2014 3/3/2015 13 Retail Opportunity > 10X Hospital(1,2,3) Retail Rx’s Target Mkt MM Hospital Antibiotic Treated Events MM (1) Decision Resources Hospital-Treated Infections 2014 Resources Community-Acquired Pneumonia 2012 (3) IMS 2014 MIDAS Rx Global Data Defined Market Azithromycin, Ciprofloxacin, Clarithromycin, Co-Amoxyclav, Levofloxacin, Linezolid * Respiratory includes Upper respiratory tract infections in retail Rx’s e.g. Bronchitis, CABP, Sinusitis, Otitis Media etc. (2) Decision 3/3/2015 14 Omadacycline: Broad Opportunity with Few Late-Stage Competitors Hospital cIAI cUTI ABSSSI CABP Community CABP ABSSSI UTI Other Omadacycline Eravacycline Solithromycin Neisseria Delafloxacin Finafloxacin Lefamulin 3/3/2015 15 Financial Summary Merger with Transcept closed October 30th 2014 Cash ~$100M (January 2015) Leading investors include: Abingworth Baupost Group Fidelity HBM Healthcare Investments Interwest Ventures Omega Funds IR Action Plan: Life science advisors Broaden investor base Expand analyst coverage Business development opportunities Sarecycline: Ex-U.S. rights Sarecycline: Monetize potential royalties Omadacycline: “Regional rights” 3/3/2015 16