Download Transfection Methods Overview - Bio-Rad

Survey
yes no Was this document useful for you?
   Thank you for your participation!

* Your assessment is very important for improving the workof artificial intelligence, which forms the content of this project

Document related concepts

Community fingerprinting wikipedia , lookup

Cre-Lox recombination wikipedia , lookup

Molecular cloning wikipedia , lookup

Artificial gene synthesis wikipedia , lookup

Cell-penetrating peptide wikipedia , lookup

Cell culture wikipedia , lookup

Transformation (genetics) wikipedia , lookup

List of types of proteins wikipedia , lookup

Channelrhodopsin wikipedia , lookup

Vectors in gene therapy wikipedia , lookup

Transcript
www.bio-rad.com/transfection
Transfection Methods Overview
Transfection Methods
Overview
1
4
Terminology
Common Transfection Methods
Reagent-Based Methods
Lipids
2
Factors Affecting Transfection
Calcium phosphate
Host Cell
Cationic polymers
Cell health
DEAE-dextran
Cell culture
Activated dendrimers
Genetic Material
Magnetic beads
DNA quality and quantity
Instrument-Based Methods
Electroporation
3
Biolistic technology
Transfection Workflow
Microinjection
Laserfection/optoinjection
Virus-Based Methods
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
2
www.bio-rad.com/transfection
Transfection Methods
1
Terminology
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
3
www.bio-rad.com/transfection
Transfection Methods
Terminology
Terminology
Transfection: Introduction of foreign DNA into the nucleus of eukaryotic cells.
Cells that have incorporated the foreign DNA are called transfectants.
Stable transfectants: Cells that have integrated foreign DNA in their genome.
Transient transfectants: Foreign DNA does not integrate in the genome but
genes are expressed for a limited time (24–96 hours).
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
4
www.bio-rad.com/transfection
Transfection Methods
Host Cell
Cell health
Cell culture
Genetic Material
2
DNA quality and quantity
Factors
Affecting
Transfection
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
5
www.bio-rad.com/transfection
Transfection Methods
Host Cell
Cell Health
Cell Health
■■
Cells should be grown in appropriate medium with all necessary factors
■■
Cultures must be free of contamination
■■
Fresh medium must be used if it contains chemically unstable components, such as thiamine
■■
■■
Home
ells should be incubated at 37°C with CO2 supplied at the correct percentage
C
(5–10%) and 100% relative humidity
Cells should be maintained in log phase growth
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
6
www.bio-rad.com/transfection
Transfection Methods
Host Cell
Cell Culture
Cell Culture
Confluency and Growth Phase
Cells should be transfected at 40–80% confluency (cell type dependent)
■■
– Too few cells cause cell cultures to grow poorly without cell-to-cell contact
–Too many cells result in contact inhibition, making cells resistant to uptake of DNA
and other macromolecules
■■
ctively dividing cells take up DNA better than quiescent cells (breakdown and perforation
A
of the nuclear membrane during mitosis enable nuclear delivery)
Number of Passages for Primary Cells
The number of passages should be low (<50)
■■
■■
■■
■■
Home
The number of passages for cells used in a variety of experiments should be consistent
ell characteristics can change over time with immortalized cell lines and cells may not
C
respond to the same transfection conditions
Cells may not respond to the same transfection conditions after repeated passages
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
7
www.bio-rad.com/transfection
Transfection Methods
DNA Quality
and Quantity
Genetic Material
DNA Quality and Quantity
■■
■■
■■
Home
Use
high-quality plasmid DNA that is free of proteins, RNA, and chemicals for transfections;
endotoxin removal should be part of the preparation procedure
Typically, DNA is suspended in sterile water or TE buffer to a final concentration of 0.2–1 mg/ml
he optimal amount of DNA to use in the transfection will vary widely depending upon the type of DNA,
T
transfection reagent/method, target cell line, and number of cells
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
8
www.bio-rad.com/transfection
Transfection
Methods | Overview
Transfection
Methods
3
Transfection
Workflow
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
9
www.bio-rad.com/transfection
Transfection Methods
Transfection Workflow
Transfection Workflow
Tissue culture
Count cells
Resuspend cells in
electroporation buffer
Add nucleic acid
Transfect cells
Plate cells
Protein expression
Western blot analysis
Home
Overview
Analysis
Reporter gene activity
Terminology
Factors Affecting
Transfection
Microscopy
Transfection
Workflow
Gene expression
Flow cytometry
Common
Transfection
Methods
Real-time qPCR
10
www.bio-rad.com/transfection
Transfection
Methods | Overview
Transfection
Methods
Reagent-Based Methods
Lipids
Calcium phosphate
Cationic polymers
DEAE-dextran
4
Activated dendrimers
Magnetic beads
Instrument-Based Methods
Electroporation
Biolistic technology
Common
Transfection
Methods
Home
Overview
Terminology
Microinjection
Laserfection/optoinjection
Virus-Based Methods
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
11
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Lipids
Cationic Lipids: Liposomes/Lipoplexes
Cationic lipids are amphiphilic molecules that have a positively charged polar head group linked,
via an anchor, to an apolar hydrophobic domain generally comprising two alkyl chains
■■
Structural variations in the hydrophobic domain of cationic lipids include the length and the degree of
non-saturation of the alkyl chains
■■
Electrostatic interactions between the positive charges of the cationic lipid head groups and the
negatively charged phosphates of the DNA backbone are the main forces that allow DNA to spontaneously associate with cationic lipids
■■
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
12
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Lipid-Mediated
Gene Delivery
Nucleic acid
Cationic lipid
Transfection
Complexing
Lipid-mediated gene delivery is also referred to as lipofection, or
liposome-based gene transfection. It uses lipids to cause a cell
to absorb exogenous DNA.
Liposome
Endocytosis
Transfer of genetic material into the cell takes place via
liposomes, which are vesicles that can merge with the cell
membrane since they are both made of a phospholipid bilayer.
Home
Overview
Terminology
Factors Affecting
Transfection
Lipids
Transfection
Workflow
Analysis
Common
Transfection
Methods
13
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Lipids
Method Overview
Solution A
Solution B
2–4 µl Transfectin™ lipid reagent
per 50 µl serum-free medium
0.25–1 µg plasmid DNA
per 50 µl serum-free medium
Mix equal volumes of TransFectin
and DNA solutions
Incubate 20 min to form DNA-liposome complexes
Mix; add DNA-liposome complexes directly to cells
(100 µl/24-well plate)
Plated cells
Home
Overview
Aspirate medium from cells
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Incubate overnight and assay
Common
Transfection
Methods
14
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Lipids
Pros and Cons
Advantages of Lipids
Deliver nucleic acids to cells in a culture dish with high efficiency
Easy to use, minimal steps required; adaptable to high-throughput systems
Using a highly active lipid will reduce the cost of lipid and nucleic acid, and achieve effective results
■■
■■
■■
Disadvantage of Lipids
Not applicable to all cell types
■■
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
15
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Calcium Phosphate
Calcium Phosphate
Ca++
The protocol involves mixing DNA with calcium chloride,
adding this in a controlled manner to a buffered saline/
phosphate solution, and allowing the mixture to incubate
at room temperature.
Ca++
Ca++
This step generates a precipitate that is dispersed onto the
cultured cells. The precipitate is taken up by the cells via
endocytosis or phagocytosis.
Ca++
Ca++
Calcium
phosphate
Ca++
DNA
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
16
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Calcium Phosphate
Method Overview
Solution A:DNA in calcium solution
Solution A
Solution B:
Solution B
2x Hanks buffered saline solution
1 Add solution A to solution B while vortexing.
Step 1
2 Incubate 20–30 min. Apply the solution to a subconfluent cell culture.
Step 2
3 Incubate 2–12 hr. Replace the solution with complete growth medium.
Step 3
4
Assay for transient gene expression or begin selection for
stable transformation time.
Step 4
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
17
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Calcium Phosphate
Pros and Cons
Advantages of Calcium Phosphate
Inexpensive
■■
■■
High efficiency (cell type dependent)
■■
Can be applied to a wide range of cell types
■■
Can be used for transient and stable transfection
Disadvantages of Calcium Phosphate
Reagent consistency is critical for reproducibility
■■
■■
Small pH changes (±0.1) can compromise transformation efficiency
■■
Size and quality of the precipitate are crucial to the success of transfection
■■
Home
alcium phosphate precipitation does not work in RPMI, due to the high
C
concentration of phosphate within the medium
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
18
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Cationic Polymers
Cationic Polymers
Cationic polymers differ from cationic lipids in that they do not contain a hydrophobic
moiety and are completely soluble in water. Given their polymeric nature, cationic polymers
can be synthesized in different lengths, with different geometry (linear versus branched).
The most striking difference between cationic lipids and cationic polymers is the ability of
the cationic polymers to more efficiently condense DNA.
There are three general types of cationic polymers used in transfections:
■■
■■
■■
Linear (histone, spermine, and polylysine)
Branched
Spherical
Cationic polymers include polyethyleneimine (PEI) and dendrimers.
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
19
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
DEAE-Dextran
Headline
DEAE-Dextran
DEAE-dextran is a cationic polymer that tightly associates with negatively charged nucleic
acids. The positively charged DNA:polymer complex comes into close association with the
negatively charged cell membrane. DNA:polymer complex uptake into the cell is presumed
to occur via endocytosis or macropinocytosis.
CH2 CH3
Dextran
O CH2 CH2
+
N
H
CH2 CH3
Diethylaminoethyl
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
20
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
DEAE-Dextran
Solution A
HeadlineOverview
Method
Step 1
Solution A:DNA (~1–5 µg/ml) diluted into 2 ml of growth
medium with serum containing chloroquine
Solution B:
Solution B
Step 2
DEAE-dextran solution (~50–500 µg/ml)
Solution C: ~5 ml of DMSO
Step 3
Solution D: Complete growth medium
Solution C
Step 4
1 Add solution A to solution B, then mix gently.
2
Aspirate cell medium and apply the mixed A and B solutions to the
subconfluent cell culture. Incubate the DNA mixture for ~4 hr.
Solution D
3 Aspirate supernatant.
Step 5
4 Add solution C to induce DNA uptake.
5 R
emove DMSO and replace with complete growth medium; assay for
transient gene expression.
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
21
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
DEAE-Dextran
Pros and Cons
Advantages of DEAE-Dextran
Inexpensive
■■
■■
Easy to perform and quick
■■
Can be applied to a wide range of cell types
Disadvantages of DEAE-Dextran
High concentrations of DEAE-dextran can be toxic to cells
■■
Home
■■
Transfection efficiencies will vary with cell type
■■
Can be used only for transient transfection
■■
Typically produces less than 10% delivery in primary cells
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
22
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Activated
Dendrimers Structure
Activated Dendrimers
G4
Generation
numbers
G3
G2
Positively charged amino groups (termini) on the surface of
the dendrimer molecule interact with the negatively charged
phosphate groups of the DNA molecule to form a DNAdendrimer complex.
The DNA-dendrimer complex has an overall positive net charge
and can bind to negatively charged surface molecules on the
membrane of eukaryotic cells. Complexes bound to the cell
surface are taken into the cell by nonspecific endocytosis. Once
inside the cell, the complexes are transported to the endosomes.
Core
G1
G0
Branching
points
Termini
Dendrimer
DNA is protected from degradation by endosomal nucleases by
being highly condensed within the DNA-dendrimer complex.
Amino groups on the dendrimers that are unprotonated at
neutral pH can become protonated in the acidic environment of
the endosome. This leads to buffering of the endosome, which
inhibits pH-dependent endosomal nucleases.
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
23
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Magnetic Beads
Magnet-Mediated Transfection
Magnet-mediated transfection uses magnetic force to deliver DNA into target cells.
Nucleic acids are first associated with magnetic nanoparticles. Then, application
of magnetic force drives the nucleic acid–particle complexes toward and into the
target cells, where the cargo is released.
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
24
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Magnetic Beads
Negatively
charged DNA
HeadlineOverview
Method
1 Dilute nucleic acid in medium.
Positively charged
magnetic particles
2 Add magnetic nanoparticle.
3 Incubate 10–20 min.
4 Add medium to adherent cells (2–4 x 105 cells).
5 Add nucleic acid/nanoparticle solution.
6 Place culture plate on magnet plate.
7 Incubate 15 min.
8 Remove magnet plate.
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
25
www.bio-rad.com/transfection
Transfection Methods
Reagent-Based Methods
Magnetic Beads
Pros and Cons
Advantages of Magnetic Beads
Rapid
■■
■■
■■
Increased transfection efficiency by the directed transport, especially for low amounts
of nucleic acids
igh transfection rates for adherent mammalian cell lines and primary cell cultures
H
(suspension cells and cells from other organisms also successfully transfected but
need to be immobilized)
■■
Mild treatment of cells
■■
Can also be performed in the presence of serum
Disadvantages of Magnetic Beads
Relatively new method
■■
■■
Home
Requires adherent cells; suspension cells need to be immobilized or centrifuged
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
26
www.bio-rad.com/transfection
Transfection Methods
Instrument-Based Methods
Step 1
+
How Electroporation Works
Ions
Electroporation
Gene
–
Cell
membrane
Before Field Applied
1Electroporation exposes a cell to a high-intensity electric field that temporarily
destabilizes the membrane.
Step 2
+
–
2During this time the membrane is highly permeable to exogenous molecules
present in the surrounding media.
Field Applied — Ions Move
3DNA then moves into the cell through these holes.
Step 3
+
–
4When the field is turned off, the pores in the membrane reseal, enclosing the
DNA inside.
Field Applied — Pathways Form
Step 4
+
–
Field Removed — Membrane Heals
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
27
www.bio-rad.com/transfection
Transfection Methods
Instrument-Based Methods
Electroporation
Type of Electrical Pulse — the Waveform
The most common electrical fields are exponential and square waveforms. The waveform has a significant
effect on the transfection efficiency for different cell types. Both exponential-decay and square-wave pulses
have been used very effectively for electroporation.
V0
V0
e
Vt
Voltage, V
Voltage, V
Voltage, V
V0
t
V0
e
t
t
Time, ms
■■
Terminology
Time, ms Time, ms
t
Time, ms
■■
■■
Overview
Vt
Square Waveform
Determined by pulse duration and/or number of pulses
Several short pulses may be more beneficial than one long pulse
Exponential Waveform
Capacitors charged to a set voltage
Set voltage is released from the selected capacitor
and decays rapidly (exponentially) over time
Home
V0
Voltage, V
V0
■■
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
28
www.bio-rad.com/transfection
Transfection Methods
Instrument-Based Methods
Electroporation
Pros and Cons
Advantages of Electroporation
Nonchemical method that doesn’t seem to alter the
biological structure or function of the target cells
■■
■■
Easy to perform
■■
High efficiency
■■
Can be applied to a wide range of cell types
Disadvantage of Electroporation
Cell mortality (if using suboptimal conditions)
■■
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
29
www.bio-rad.com/transfection
Transfection Methods
Instrument-Based Methods
Biolistic Technology
Biolistic Particle Delivery
Biolistic transformation is the delivery of nucleic acids into cells via high velocity nucleic acid–coated microparticles.
Helios® Gene Gun
For in situ, in vivo, and in vitro transformations
Applications for animals, plants, cell culture, nematodes,
yeast, and bacteria
Pressure range 100–600 psi enables fine-tuning of penetration
Highly portable — can be used in the field
Small target area for accurate targeting
■■
■■
■■
■■
■■
PDS-1000/He™ Biolistic Particle Delivery System
For in vitro, ex vivo, and in vivo (for some plants and microbes)
transformations
Applications for animal cell and organ cultures, plant cell cultures
and explants, pollen, insects, algae, fungi, and bacteria
Pressure range 450–2,200 psi gives flexibility and penetration —
ideal for plant applications
Large target area — more cells can be transformed
■■
■■
■■
■■
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
30
www.bio-rad.com/transfection
Transfection Methods
Instrument-Based Methods
Biolistic Technology
Helios Gene Gun — Process Overview
®
1 Precipitate DNA onto gold particles.
2 Load DNA/gold into tubing.
3 Rotate tubing to coat DNA gold over inside surface.
4 Cut tubing into cartridges.
5 Load cartridges into gene gun.
6 Deliver DNA into target cells.
Step 1
Home
Step 2
Overview
Step 3
Terminology
Factors Affecting
Transfection
Step 4
Transfection
Workflow
Step 5
Common
Transfection
Methods
Step 6
31
www.bio-rad.com/transfection
Transfection Methods
Instrument-Based Methods
Biolistic Technology
PDS-1000/He™ System — Process Overview
1 DNA-coated gold particles (microcarrier) are spread over the central area of a thin plastic disk (macrocarrier).
2 Disk loaded with the DNA-gold particles is placed into a holder inside the PDS-1000/He system.
3The system uses high-pressure helium, released by a rupture disk, and partial vacuum to propel the macrocarrier
loaded with microcarrier toward the target cells.
4 Macrocarrier is stopped after a short distance by a stopping screen.
5 DNA-coated gold particles continue travelling toward the target to penetrate the cells.
6 Sample chamber is subjected to partial vacuum, from 15 to 29 inches of mercury, depending on the target cells.
Gas acceleration tube
Rupture disk
Macrocarrier
Stopping screen
Microcarrier launch assembly
DNA-coated microcarriers
Target cells
Target shelf
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
32
www.bio-rad.com/transfection
Transfection Methods
Instrument-Based Methods
Biolistic Technology
Helios® Gene Gun vs. PDS-1000/He™ System
Factors Affecting Transformation Helios Gene Gun System
PDS-1000/He System
PDS-1000/He™ System With Hepta™ Adaptor
Experimental conditions
In situ, in vitro, in vivo, ex vivo
In vitro, ex vivo, in vivo (plants)
In vitro, ex vivo, in vivo (plants)
Target area
Small (2 cm2)
Large (40 cm2)
Largest (~75 cm2)
Pressure range
100–600 psi
450–2,200, psi
450–2,200 psi, reduced by 7-way spread of helium
Target type
Animals: Any tissue exposed Animals: Cell and organ culture
to barrel (skin, organs); cell, Plants: Small intact plants, explant, and organ culture
plant cell culture, explants
Plants: Field and greenhouse
use, plant cell culture, explants
Yeast, bacteria, other microbes Home
Overview
Terminology
Factors Affecting
Transfection
Animals: Cell and organ culture
Plants: Cells with thin cell walls
Yeast, bacteria, other microbes
Yeast, bacteria, other microbes
Organelles (chloroplasts,
mitochondria, etc.)
Transfection
Workflow
Common
Transfection
Methods
33
www.bio-rad.com/transfection
Transfection Methods
Instrument-Based Methods
Biolistic Technology
Pros and Cons
Advantages of Biolistic Technology
Simple, rapid, versatile technique
Targeted intracellular gene delivery
Cell type independent
Uses small amounts of DNA
Delivers single or multiple genes
No carrier DNA needed
Can deliver large DNA fragments
No extraneous genes or proteins delivered
Requires little manipulation of cells
High reproducibility
■■
■■
■■
■■
■■
■■
■■
■■
■■
■■
Disadvantages of Biolistic Technology
Generally lower efficiency compared to electroporation or viral- or lipid-mediated transfection
Limited bacterial transfection data
Preparation of microparticles
Instrument cost
Requires purchase agreement
■■
■■
■■
■■
■■
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
34
www.bio-rad.com/transfection
Transfection Methods
Instrument-Based Methods
Microinjection
Microinjection
■■
■■
■■
■■
Direct injection of naked DNA
Laborious (one cell at a time)
Technically demanding and costly
Can be used for many animals
Holding pipet
Injecting pipet
Transgene
Fertilized egg, 100 µm
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
35
www.bio-rad.com/transfection
Transfection Methods
Instrument-Based Methods
Laserfection/
Optoinjection
Laserfection/Optoinjection
■■
■■
This procedure uses laser light to transiently permeabilize a large number of cells in a very short time
arious substances can be efficiently optoinjected, including ions, small molecules, dextrans, short interfering
V
RNAs (siRNAs), plasmids, proteins, and semiconductor nanocrystals, into numerous cell types
■■
Advantages: very efficient; works with many cell types; fewer cell manipulations needed
■■
Disadvantages: requires the cells to be attached; expensive laser-based equipment needed
Impermeant
nanoparticles
Intact cell
Home
Overview
532 nm laser beam
Terminology
Factors Affecting
Transfection
Transiently permeabilized
Transfection
Workflow
Common
Transfection
Methods
Intact cell
36
www.bio-rad.com/transfection
Transfection Methods
Virus-Based Methods
Viral Vectors
Retroviruses
Murine leukemia virus (MuLV)
Human immunodeficiency virus (HIV)
Human T-cell lymphotropic virus (HTLV)
■■
■■
■■
DNA Viruses
Adenovirus
Adeno-associated virus (AAV)
Herpes simplex virus (HSV)
■■
■■
■■
Retroviruses — a class of viruses that can create double-stranded DNA copies of their RNA genomes;
these copies can be integrated into the chromosomes of host cells. HIV is a retrovirus.
Adenoviruses — a class of viruses with double-stranded DNA genomes that cause respiratory, intestinal,
and eye infections in humans. The virus that causes the common cold is an adenovirus.
Adeno-associated viruses — a class of small, single-stranded DNA viruses that can insert their genetic
material at a specific site on chromosome 19.
Herpes simplex viruses — a class of double-stranded DNA viruses that infect a particular cell type,
neurons. Herpes simplex virus type 1 is a common human pathogen that causes cold sores.
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
37
www.bio-rad.com/transfection
Transfection Methods
Virus-Based Methods
Viral Attributes
Viral Vector
DNA Insert Size
Maximum Titer
Cell Type
Expression
Pitfalls
Retroviral
8 kb
1 x 109
Dividing cells
Stable
Random insertion site
Lentivirus
9 kb
1 x 109
Dividing cells
Nondividing cells
Stable
Random insertion site
Adenovirus
8 kb
1 x 1013
Dividing cells
Nondividing cells
Transient
Highly immunogenic
Adeno-associated virus 5 kb 1 x 1011 (AAV)
Dividing cells Nondividing cells
Stable, site-specific
location
Requires helper virus to grow; difficult to remove helper virus
Herpes simplex virus
30–40 kb
1 x 109
Dividing cells
Transient
Nondividing cells
No gene expression
during latent infection
Vaccinia virus
Dividing cells
Potential cytopathic effects
Home
3 x 109
25 kb
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Transient
Common
Transfection
Methods
38
www.bio-rad.com/transfection
Transfection Methods
Virus-Based Methods
Virus Preparation
Viral Workflow
Transfect a 293 producer
cell line with the gene of
interest inserted into the
expression vector
Transfect
8–10 hr
Expression
vector
Target Cell Infection
Plate target cells
48–72 hr
Harvest
supernatant
Collect virus
18 hr
Infect with diluted virus
Determine
the titer of
virus stock
Add the viral
supernatant to
the target cells
to produce a
stably expressed
cell line
Determine viral titer (1 week)
2–3 days
Select cells and analyze
Home
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
39
www.bio-rad.com/transfection
Transfection Methods
Virus-Based Methods
Pros and Cons
Advantages of Virus-Based Methods
Very high gene delivery efficiency, 95–100%
■■
■■
Simplicity of infection
Disadvantages of Virus-Based Methods
Labor intensive
■■
■■
Best for introducing a single cloned gene that is to be highly expressed
■■
P2 containment required for most viruses
–Institutional regulation and review boards required
–Viral transfer of regulatory genes or oncogenes is inherently dangerous
and should be carefully monitored
–Host range specificity may not be adequate
Home
■■
Many viruses are lytic
■■
Need for packaging cell lines
Overview
Terminology
Factors Affecting
Transfection
Transfection
Workflow
Common
Transfection
Methods
40
www.bio-rad.com/transfection
Transfection Methods
Bio-Rad
Laboratories, Inc.
Web site www.bio-rad.com USA 800 424 6723 Australia 61 2 9914 2800 Austria 01 877 89 01 Belgium 09 385 55 11 Brazil 55 31 3689 6600 Canada 905 364 3435 China 86 21 6169 8500
Czech Republic 420 241 430 532 Denmark 44 52 10 00 Finland 09 804 22 00 France 01 47 95 69 65 Germany 089 31 884 0 Greece 30 210 777 4396 Hong Kong 852 2789 3300 Hungary 36 1 459 6100
India 91 124 4029300 Israel 03 963 6050 Italy 39 02 216091 Japan 03 6361 7000 Korea 82 2 3473 4460 Malaysia 60 3 2117 5260 Mexico 52 555 488 7670 The Netherlands 0318 540666
New Zealand 64 9 415 2280 Norway 23 38 41 30 Poland 48 22 331 99 99 Portugal 351 21 472 7700 Russia 7 495 721 14 04 Singapore 65 6415 3170 South Africa 27 861 246 723 Spain 34 91 590 5200
Sweden 08 555 12700 Switzerland 061 717 95 55 Taiwan 886 2 2578 7189 Thailand 66 2 6518311 United Kingdom 020 8328 2000 Vietnam 84 8 38131140
Life Science
Group
Bulletin 6057 Rev A
US/EG
Home
10-0826
0111
Sig 1110
41