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Superoxide dismutases: active sites that save, but a protein that kills Anne-Frances Miller Protection from oxidative damage is sufficiently important that biology has evolved three independent enzymes for hastening superoxide dismutation: the Cu- and Zn-containing superoxide dismutases (Cu,Zn-SODs), the SODs that are specific for Fe or Mn or function with either of the two (Fe-SODs, Mn-SODs or Fe/ Mn-SODs), and the SODs that use Ni (Ni-SODs). Despite the overwhelming similarities between the active sites of Fe-SOD and Mn-SOD, the mechanisms and redox tuning of these two sites appear to incorporate crucial differences consistent with the differences between Fe3þ/2þ and Mn3þ/2þ. Ni-SOD is revealed by spectroscopy to employ completely different ligation to that of the other SODs while nonetheless incorporating a device also found in Cu,Zn-SOD. Finally, the protein of human Cu,Zn-SOD appears to be an important contributor to the development of amyotrophic lateral sclerosis, possibly because of its propensity for extended b-sheet formation. Addresses Department of Chemistry, University of Kentucky, Lexington KY, 40506-0055, USA e-mail: [email protected] Current Opinion in Chemical Biology 2004, 8:162–168 This review comes from a themed issue on Bioinorganic chemistry Edited by Stephen J Lippard and Jeremy M Berg 1367-5931/$ – see front matter ß 2004 Elsevier Ltd. All rights reserved. DOI 10.1016/j.cbpa.2004.02.011 Abbreviations ALS amyotrophic lateral sclerosis SOD superoxide dismutase XAS X-ray absorption spectroscopy Introduction Disproportionation of superoxide (O2 ) is an exceptionally simple reaction, yet it incorporates central themes of redox catalysis in general, including the coupling between protons and electrons, which is a potent device for conservation, transduction and utilization of energy. The overall disproportionation: 2O2 þ 2Hþ $ O2 þ H2 O2 is accomplished by Fe-, Mn- and Cu,Zn-superoxide dismutases (SODs) in two steps, which are both first-order with respect to O2 (reviewed in [1]): Ezox þ O2 þ Hþ $ Ezred ðHþ Þ þ O2 þ Ezred ðH Þ þ O2 þ þ H $ Ezox þ H2 O2 Current Opinion in Chemical Biology 2004, 8:162–168 (1a) (1b) where Ezox and Ezred denote the Cu2þZn2þ and CuþZn2þ, Fe3þ and Fe2þ, Mn3þ and Mn2þ, Ni3þ and Ni2þ states of the Cu,Zn-, Fe-, Mn- and Ni-SODs, respectively, and the acquisition of a redox-coupled proton is indicated by the appended ‘(Hþ)’. (Proton uptake coupled to enzyme reduction is presumed but has not been demonstrated experimentally for Ni-SOD.) Oxidation of O2 does not involve proton transfer at neutral pH (HO2 $ O2 þ Hþ has a pK of 4.5 [2]). Thus, this half of the reaction of O2 explicitly requires only substrate binding and electron transfer, and it is favorable. By contrast, pure reduction of O2 is extremely unfavorable. However, by supplying even only one of the protons required for formation of H2O2, the enzyme can greatly promote and accelerate reduction of O2 [2]. Thus, one theme evident among SODs is that the favorable first half-reaction is coupled to uptake of one proton, which in turn can facilitate substrate reduction (and binding, below). Excess energy available from the first half reaction is thereby applied to the second. An additional barrier to spontaneous disproportionation of superoxide at neutral pH is the difficulty of overcoming electrostatic repulsion between two O2 anions. SODs circumvent this difficulty in two ways: first, Fe-, Mn- and Cu,Zn-SODs react with only one molecule of O2 at a time; and second, they exploit electrostatic interactions with the negative charge of O2 to favor specific binding of substrate but not products. Structurally characterized SODs have so far been found to have net positive electrostatic potential near the active site, caused by the metal centre itself. In Cu,Zn-, Fe- and Mn-SODs, the charge on the metal centre is not fully neutralized by its ligands (although second-sphere residues tend to compensate). Net positive charge probably contributes to substrate binding, and these SODs all bind not only O2 , but also a series of other small anions. By contrast, each of the two products of disproportionation is neutral and therefore would not be bound by this mechanism. Thus, the change in charge associated with conversion of substrate to product is exploited by the mechanism of substrate binding. The SOD ping-pong mechanism requires that O2 bind to two different versions of the same active site. However the active site’s electrostatic attraction for incoming O2 is preserved upon metal ion reduction by the coupled uptake of a proton (above). Thus, although the charge distribution is changed, the total charge is not, and substrate binding should still be favored to a similar extent, if in a different mode. Although the three kinds of SODs are completely different in their protein structure and metal ion content (Figure 1), their evolution to address the same www.sciencedirect.com Superoxide dismutases: active sites that save, but a protein that kills Miller 163 Figure 1 Fe-SOD and Mn-SOD Cu,Zn-SOD Current Opinion in Chemical Biology Comparison of the protein folds of Mn- or Fe-SODs (left) and Cu,Zn-SODs (right). Fe- and Mn-SODs have monomers of 200 amino acids and occur as dimers or tetramers. The magenta ball depicts the active site Fe or Mn ion of the colored monomer (coordinates 1ISB.pdb for Fe-SOD). Cu,ZnSODs have monomers of 150 amino acids and mostly occur as dimers. The Cu ion is in green and the Zn in black for the colored monomer (coordinates 2SOD.pdb). The Zn loop and the electrostatic loop of Cu,Zn-SOD make up what appear in the figure to be the upper and lower lips of the metal-containing active site. The structure of Ni-SOD has been solved too, but could not yet be made public (see [55]). challenge has produced common as well as different features. Fe-SOD The active site contains a single Fe ion coordinated in a trigonal bipyramid by three histidines, an Asp and a molecule of OH/H2O that is supported by a conserved hydrogen bond network including Gln69 and Tyr34 (numbering of Escherichia coli, Figure 2). Substrate analogues have been shown to bind differently to the two oxidation states, forming a six-coordinate complex of the oxidized state but leaving a five-coordinate active site in the reduced state [4]. However, substrate binding is almost certainly coupled to transfer of electron density, as NO binding produces a state best described as formal Fe3þ-NO [5]. In Fe-SOD’s first half-reaction, the flow of electrons would be the reverse, with the Fe3þ-O2 adduct dissociating as in reversible O2-binding systems to yield O2 þ Fe2þ. Proton uptake coupled to metal ion reduction was demonstrated in the classic paper by Bull and Fee [6]. Recent experimental [7] and computational [8] studies indicate that the coordinated OH becomes protonated to H2O upon Fe reduction (Protein(Fe3þ-OH) $ Protein(Fe2þ-OH2)). An ‘extra’ proton is thus available to aid in substrate binding to the reduced state. Because the reduced metal ion itself is less positively charged and less disposed to coordinate O2 (below) an outer sphere mechanism is attractive instead of the inner-sphere mechanism proposed for the first half reaction. Studies of both NO binding and N3 www.sciencedirect.com binding demonstrate the existence of two similar but distinct substrate analogue-bound configurations, whose populations are modulated by the second sphere [5,9]. Perhaps they represent occupancy of the substrate binding sites that are normally employed in the two different oxidation states. Substrate binding has been difficult to elucidate unambiguously in X-ray crystal structures because it has been difficult to obtain full occupancy of the substrate analogue, the metal ion is subject to reduction in the X-ray beam, and the substrate analogues are very small molecules whose electron density can be difficult to distinguish from that of a coordinated solvent, next to a relatively electrondense metal ion. However, recent successful resonance Raman of the N3 complex of Fe3þ-SOD and variable temperature-variable field magnetic circular dichroism in conjunction with computations support the crystallographically determined six-coordinate N3 complex [9]. In addition, better resolution is being attained in some of the recent crystal structures, such as the 1.6 Å structure of Fe-SOD from Thermosynechococcus elongatus [10]. Mn-SOD The obvious similarities between Fe- and Mn-SODs [1,4] belie crucial differences between the events underlying the mechanism [4,11,12]. Whereas Fe3þ-SOD coordinates substrate analogues to form a six-coordinate complex, substrate analogue binding to Mn3þ-SOD appears to involve only partial, weak or transient coordination of the anion to Mn3þ (although at low temperature or Current Opinion in Chemical Biology 2004, 8:162–168 164 Bioinorganic chemistry Figure 2 Q146 N80 W128 H80 Y34 H71 H81 HO- H63 R143 H2O Mn D167 H2O H48 D83 Cu H171 D124 H30 Zn H26 H46 H120 Mn-SOD (or Fe-SOD) Cu,Zn-SOD Current Opinion in Chemical Biology Comparison of the active site of Mn- or Fe-SODs (left) with that of oxidized Cu,Zn-SODs (right), including important hydrogen bonding residues and residues mentioned in the text. For Mn- or Fe-SOD, the magenta ball depicts the Mn3þ/2þ or Fe3þ/2þ ion and the water molecule to its left may indicate a substrate-binding site [3]. The amino acid residues are numbered according to E. coli Mn-SOD and the coordinates used were 1D5N.pdb. In E. coli Fe-SOD, the active site Gln is Q69. For Cu,Zn-SOD, the green ball depicts the Cu2þ ion and the black ball depicts the Zn2þ ion. The amino acid residues are numbered according to human cytoplasmic Cu,Zn-SOD (SOD1) although the coordinates used were those of the bovine enzyme, 2SOD.pdb. The water molecule above and to the right of the Cu2þ ion represents the presumed substrate binding site (outer-sphere binding via R143 and H63 is envisioned for the reduced state). Solid lines indicate bonds and dashed lines indicate hydrogen bonds. in the Y34F mutant, a dominant six-coordinate complex is formed) [13]. Similarly, Fe3þ-SOD has a pKa of 8.5 assigned to coordination of OH to Fe3þ but Mn3þ-SOD’s active site pK of 9.5 has been assigned to deprotonation of Tyr34, based on the pH dependence of the 13 Cz NMR signal of Tyr34 [12]. These differences are consistent with the different electronic configurations of Fe and Mn in each oxidation state [11,12]. Thus, Mn3þ, a d4 ion, would loose the benefit of Jahn-Teller stabilization upon formation of a six-coordinate complex with OH, other substrate analogues, or O2 , whereas Fe3þ is a d5 ion with no such cost. Conversely Fe2þ has some preference for retention of an unsaturated coordination sphere, whereas Mn2þ prefers octahedral hexa-coordination. Thus, differences persist but are less pronounced in the reduced states. The Fe2þ of Fe2þ-SOD does not appear to coordinate substrate analogues, but the Mn2þ of Mn2þ-SOD does [14,15]. However, Mn3þ-SOD has been shown to take up a proton upon reduction, similar to Fe-SOD [7] and the active site pK of the reduced state has been assigned to Tyr34 but also affects the metal site [12], as in Fe2þ-SOD [16]. The greater tendency of Fe3þ than Mn3þ to coordinate OH can explain the much lower pK (and lower activity at higher pH) of the Fe-containing versions of metal-specific and cambialistic SODs (most recently [17], discussed in [4,18,19]). Current Opinion in Chemical Biology 2004, 8:162–168 Thus, the protein features that would optimally complement the electronic configuration and intrinsic reduction potential of Mn are not expected to provide nearly as good support for Fe, and it is not surprising that metal ion substitution produces altered substrate analogue affinities, shifted pKs and very different reduction midpoint potentials, all of which could contribute to the observed decreases in activities. While the overall electronic configuration and coordination geometry seems to be conserved when one of Fe or Mn is bound in the active sites of proteins with different metal ion specificities for activity [11], high field EPR and optical band maxima demonstrate that subtle differences in the geometry of the Mn2þ or Fe3þ ion in the different active sites correlate with activity [19], as does the EPR spectral change associated with high pH for bound Fe3þ [20]. Such spectroscopic differences have been produced by perturbations even beyond the second sphere, such as mutations that affect the hydrogen bonding network [19,21,22] or ionization of Tyr34 [12], and distinguish the Fe- or Mn-SODs of different species [15]. The active site of Mn-SOD also appears to depress the reduction midpoint potential of the bound metal ion much more than does the active site of Fe-SOD [23,24], as is to be expected since intrinsic potential of www.sciencedirect.com Superoxide dismutases: active sites that save, but a protein that kills Miller 165 high-spin Mn3þ/2þ is much higher than that of high spin Fe3þ/2þ. There is evidence that this reflects, at least in part, the extent to which the different sites stabilize coordinated OH versus coordinated H2O: because the former is associated with the 3þ state for both Fe and Mn, its relative stabilization would lower the reduction potential [25,26]. Thus, the Mn-SOD protein, which appears to donate a stronger hydrogen bond to coordinated solvent [25], would be expected to lower the reduction potential more, as observed, and mutation of the hydrogen-bond-donating Gln to hydrogen-bond-accepting Glu is associated with a large increase in reduction potential [26]. Similarly, mutation of a nearby residue that partially disrupts the hydrogen bond network increases Fe-based activity at the expense of Mn-based activity in a SOD protein that supports both, and also appears to raise the metal ion reduction potential, as appropriate for Fe [19]. Moreover, insofar as the strength (and polarity) of the hydrogen bond to coordinated solvent would also modulate the ligand strength of coordinated solvent, it could produce the observed effects on the EPR signal too [19]. Another area of progress has been characterization of the peroxide-inhibited complex of Mn-SOD. Silverman’s team have found that mutations affecting residues that hydrogen bond with the conserved active site Gln146, or His30 in the substrate access channel, result in very longlived inhibited complexes that accumulate to up to 20 times higher levels than in WT Mn-SOD [27]. By contrast, a mutant Mn-SOD displaying decreased formation of the inhibited complex has anti-proliferative properties and results in slower-growing tumors [28]. The optical signature of the peroxide-inhibited complex is very similar to that of the six-coordinate N3 complex of Mn3þSOD [27]. Thus, the inhibited complex could represent a deviation from normal turnover, if after productive O2 coordination to Mn2þ to form a six-coordinate complex, electron transfer from Mn2þ were accompanied by proton transfer to the terminal O to form a hydroperoxide adduct. This could explain the observed six-coordinate Mn3þ complex, whereas on-pathway catalysis might be more likely to involve proton transfer to the proximal O, which would prompt dissociation of nascent HO2– in conjunction with Mn2þ oxidation to the (favored) five-coordinate Mn3þ complex. Cu,Zn-SOD ‘Erythrocuprein’ was the first of the SODs to be identified as such [29]. The active site of the oxidized form of Cu,Zn-SOD has a Cu2þ ion coordinated in a distorted square pyramid by a solvent molecule and four histidines, one of which is also a ligand to a roughly tetrahedral Zn2þ coordinated by two other His and an Asp (Figure 2; [30,31]). Thus the active site is completely unrelated to that of Fe-SOD and Mn-SOD, and different mechanisms are found to accomplish many of the elements of superoxide disproportionation. A series of small anions are www.sciencedirect.com attracted by local positive charge, bind directly to Cu2þ in place of the solvent molecule, and extend in the direction of the conserved Arg143 (reviewed by [31]). Upon reduction, Cu is thought to release the His63 ligand it shared with the Zn2þ ion, as well as departing O2, to become trigonal and roughly planar. The active site electrostatics are conserved overall by uptake of a proton upon reduction, as in Fe-SOD and Mn-SOD, but in this case the His63 released by Cu appears to take up a proton at the now free Ne, on the basis of NMR observation of a proton at that position [32]. This device also serves to make the redox-coupled proton available to promote reduction of O2 by Cuþ. In the second half reaction, O2 is believed to bind to the protein via the conserved Arg143 and the Ne of His63. Upon (partial) protonation by these groups, O2 would oxidize the Cu, which as Cu2þ would recapture its ligand His63, completing displacement of the Ne Hþ presumably transferred to nascent product (reviewed in [1]). It is my hope that more experiments will be done to define the site and mode of substrate binding to the reduced state. Finally, Cu,Zn-SOD has been the basis for protein engineering to produce a monomeric version and to increase activity by modifying the electrostatic environment of the active site (reviewed in [33]). Cu,Zn-SOD also remains prominent as a model system for developments in the application of NMR spectroscopy to paramagnetic systems [34]. Recent research on Cu,Zn-SOD has been propelled by questions as to the relationship between CuZn-SOD and amyotrophic lateral sclerosis (ALS, reviewed in [35]). From the first, it was evident that mutants of CuZnSOD gained some property that was associated with development of ALS, and dominated over coexpressed WT-Cu,Zn-SOD (reviewed in [35,36]). However, a bewildering variety of mutants, approximately 90 as of 2003 [35], are all associated with familial ALS. Two possibilities dominate current thinking, and are potentially related to one another. One model is that mutant CuZn-SODs have higher-than-WT oxidative activity that contributes to oxidative damage [31,37,38,39], and appears to be stimulated by physiological bicarbonate concentrations ([40], but see [41]). Indeed levels of oxidative stress appear higher in the presence of ALS-associated Cu,Zn-SOD mutants [39] and there is good evidence of production of CO3 – ([42] and references therein), which is sufficiently long-lived to diffuse away and initiate oxidative damage to other molecules nearby. However the majority of ALS-associated mutants have not been shown to have significantly higher-than-WT peroxidase activity [41]. Instead, there is growing support for the notion that many ALS-associated SOD mutants are less stable [33,35] and Current Opinion in Chemical Biology 2004, 8:162–168 166 Bioinorganic chemistry more prone to formation of aggregates and fibrils [43], which could saturate the cell’s chaperone [44,45] and proteasome resources [36] or inhibit axonal transport machinery [46,47]. In vitro, WT-Cu,Zn-SOD becomes modified by CO3 at its surface Trp32, and cross-linked ([42] and references therein). Cu,Zn-SODs with mutations that abrogate metal ion binding are much less stable and form amyloid-like filaments [43,48], and in mutant and WT-Cu,Zn-SODs that retain bound Cu, oxidative damage to active site residues causes metal ion release [49]. Even metal-depleted WT-Cu,Zn-SOD has been shown to form filaments based on association of the b sheets of individual SOD monomers [30]. Thus metaldepleted and mutant Cu,Zn-SODs have a much higher tendency to aggregate, even without oxidative cross-linking, and oxidative damage leads to metal depletion. Finally, Tobisawa et al. have shown, for a set of four Cu,Zn-SOD mutants comprising mutants with disrupted active sites as well as mutants that retain close-to WT catalytic activity, that the mutants but not the WT form aggregates when they are either expressed at a high level, or proteasome activity is inhibited [47]. Moreover, mutant SOD aggregation was accompanied by defective microtubule assembly, and mis-localization of mitochondria and proteins [47]. These results provide attractive rationales for the special vulnerability of motor neurons, as even slightly defective localization and transport mechanisms would be particularly damaging since many proteins must be moved over 1 m distances to reach nerve termini [46]. The delayed onset of symptoms associated with ALS could reflect age-related decline of proteasome activity and thus loss of ability to prevent accumulation of aggregates [47,50]. Ni-SOD contains one Ni per monomer [54] but there are conflicting reports as to whether the enzyme is tetrameric or hexameric. X-ray absorption spectroscopy (XAS) indicates penta-coordinate Ni3þ coordinated by multiple S donors and N/O ligands [56]. However, there are only two Cys per monomer and the one Met has been shown not to be a ligand, since mutation to Leu does not disrupt activity or the spectral signatures [57]. Thus, a dinuclear, Ni2 site was proposed, most reasonably, consistent with the Ni3þ EPR signal intensity corresponding to 0.5 Ni3þ per monomer (one Ni3þ per Ni2 cluster and one such cluster per protein dimer) [54,56]. Well-resolved 14N superhyperfine structure on the EPR signal further indicates an axial N donor [54,56]. Mutation of the only His (His1) to Gln decreases the activity 100-fold, and causes the enzyme to be largely reduced as-isolated, indicating an increase in reduction potential [57]. The resting Ni3þ state is proposed to alternate with a Ni2þ state upon reaction with O2 [56], and the dithionite-reduced enzyme displays exclusively four-coordinated Ni2þ, indicating that the Ni3þ site releases a ligand upon reduction (reminiscent of Cu,Zn-SOD). On the basis of sulfur XAS, Szilagyi et al. have proposed that a terminal thiolate ligand takes up a proton upon Ni3þ reduction by peroxide [58], analogous to proton uptake by a ligand in Fe- and Mn-SOD. Alternatively, it is possible that the dissociating N donor could become protonated upon its release from Ni and thus accomplish redox-coupled proton uptake in a fashion analogous to that observed in Cu,Zn-SOD [56]. The forthcoming crystal structures will provide exciting complements to the spectroscopic information. Conclusions Thus, the two models should probably be viewed as interrelated with the roles of cause and effect blurring and varying in different mutants, and even WT-Cu,ZnSOD could contribute to sporadic ALS [30,40]. There is conflicting evidence as to the importance of Zn-depletion [35,48]. However Cu,Zn-SOD’s association with familial ALS could derive from a tendency of b sheets to form extended arrays [51]. This could happen in Cu,Zn-SOD if the sheet edges normally protected by the Zn-binding and electrostatic loops are unmasked upon metal ion depletion or loss of loop structure [30] (see Figure 1). There is also recent evidence that Cu,Zn-SOD’s localization to mitochondria could play an important role in the aetiology of ALS [52,53]. Progress continues apace for all three types of SOD. However, the directions this is taking are strikingly different. For the Fe-, Mn- and Fe/Mn-SODs, spectroscopic methods are advancing our ability to understand electronic bases for reactivity and how these vary from enzyme to enzyme. For the Cu,Zn-SODs there is great excitement in understanding this enzyme’s link to ALS. Research on Ni-SOD has jumped forward with new spectroscopic results and most exciting crystal structures. Ni-SOD References and recommended reading Several Streptomyces species have been shown to produce a Ni-dependent SOD that is completely unrelated to the better-known Cu,Zn-, Fe- and Mn-SODs [54]. Crystal structures have been solved but (alas) were not yet public at the time of this writing [55]. However, a substantial amount of spectroscopic evidence provides important insights into how the active site Ni ions function. Papers of particular interest, published within the annual period of review, have been highlighted as: Current Opinion in Chemical Biology 2004, 8:162–168 Acknowledgements I offer my belated thanks to Dr JA Fee for generosity to me at the beginning of my independent career. Work on SOD in my laboratory is currently funded by NSF MCB0129599 and the Kentucky science and engineering fund KSEF172. of special interest of outstanding interest 1. Miller A-F: Superoxide Processing. In Coordination Chemistry in the Biosphere and Geosphere. Edited by Que L Jr, Tolman W: Oxford, Amsterdam, New York and Tokyo: Pergamon; 2003:479-506. www.sciencedirect.com Superoxide dismutases: active sites that save, but a protein that kills Miller 167 2. Sawyer DT, Valentine JS: How super is superoxide? Acc Chem Res 1981, 14:393-400. 3. Borgstahl GEO, Pokross M, Chehab R, Sekher A, Snell EH: Cryo-trapping the six-coordinate, distorted-octahedral active site of manganese superoxide dismutase. J Mol Biol 2000, 296:951-959. 4. Miller A-F: Fe-superoxide dismutase. In Handbook of Metalloproteins, vol. 1. Edited by Wieghardt K, Huber R, Poulos TL, Messerschmidt A: Chicester, New York, Weinheim, Brisbane, Singapore and Toronto: Wiley and Sons; 2001:668-682. A thorough review of the Fe-SOD literature up to 2000. 5. Jackson TA, Yikilmaz E, Miller A-F, Brunold TC: Spectroscopic and computational study of a non-heme iron {Fe-NO}7 system: exploring the geometric and electronic structures of the nitrosyl adduct of iron superoxide dismutase. J Am Chem Soc 2003, 125:8348-8363. A long-overdue investigation of Fe-SOD’s reactivity with NO, which is a uniquely faithful substrate analogue with respect to its electronic structure and redox activity. 6. Bull C, Fee JA: Steady-state kinetic studies of superoxide dismutases: properties of the iron containing protein from Escherichia coli. J Am Chem Soc 1985, 107:3295-3304. 7. Miller A-F, Padmakumar K, Sorkin DL, Karapetian A, Vance CK: Proton-coupled electron transfer in Fe-superoxide dismutase and Mn-superoxide dismutase. J Inorg Biochem 2003, 93:71-83. 8. Han WG, Lovell T, Noodleman L: Coupled redox potentials in manganese and iron superoxide dismutases from reaction kinetics and density functional/electrostatics calculations. Inorg Chem 2002, 41:205-218. Detailed computations comparing the energetics of metal ion reduction alone and coupled to proton transfer, from an expert. This paper duplicates trends observed among different Fe- and Mn-SODs and validates the expected link between observed rate constants and the reduction midpoint potential. 9. Xie J, Yikilmaz E, Miller A-F, Brunold TC: Second-sphere contributions to substrate analog binding in iron(III) superoxide dismutase. J Am Chem Soc 2002, 124:3769-3774. 10. Kerfeld CA, Yoshida S, Tran KT, Yeates TO, Cascio D, Bottin H, Berthomieu C, Sugiura M, Boussac A: The 1.6 A resolution structure of Fe-superoxide dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus. J Biol Inorg Chem 2003, 8:707-714. 11. Jackson TA, Xie J, Yikilmaz E, Miller A-F, Brunold TC: Spectroscopic and computational studies on iron and manganese superoxide dismutases: nature of the chemical events associated with active site pKs. J Am Chem Soc 2002, 124:10833-10845. 12. Maliekal J, Karapetian A, Vance C, Yikilmaz E, Wu Q, Jackson T, Brunold TC, Spiro TG, Miller A-F: Comparison and contrasts between the active site pKs of Mn-superoxide dismutase and those of Fe-superoxide dismutase. J Am Chem Soc 2002, 124:15064-15075. Despite the overwhelming appearance of similarity between the active sites of Fe-SOD and MnSOD, the events responsible for the oxidized state pK are not the same. The mechanistic significance of this finding is discussed. 13. Whittaker MM, Whittaker JW: Low-temperature thermochromism marks a change in coordination for the metal ion in manganese superoxide dismutase. Biochemistry 1996, 35:6762-6770. 14. Whittaker JW, Whittaker MM: Active site spectral studies on manganese superoxide dismutase. J Am Chem Soc 1991, 113:5528-5540. 15. Un S, Dorlet P, Voyard G, Tabares LC, Cortez N: High-field EPR characterization of manganese reconstituted superoxide dismutase from Rhodobacter capsulatus. J Am Chem Soc 2001, 123:10123-10124. cambialistic, manganese-containing enzyme. J Bacteriol 2003, 185:3223-3227. 18. Edwards RA, Whittaker MM, Whittaker JW, Baker EN, Jameson GB: Outer sphere mutations perturb metal reactivity in manganese superoxide dismutase. Biochemistry 2001, 40:15-27. A thoughtful comparison of several mutants addressing the Gln that hydrogen bonds to coordinated solvent, as well as the ‘gateway’ Tyr. 19. Yamakura F, Sugio S, Hiraoka BY, Ohmori D, Yokota T: Pronounced conversion of the metal-specific activity of superoxide dismutase from Porphyromonas gingivalis by the mutation of a single amino acid (Gly155Thr) located apart from the active site. Biochemistry 2003, 42:10790-10799. A lesson in the subtlety of proteins, and enzyme active sites. A remote mutation indirectly modifies the strengths of hydrogen bonds and thus achieves a 20-fold effect on activity. This most recent contribution from one of the founders of the field combines biochemical, spectroscopic and structural data. 20. Vance CK, Miller A-F: Spectroscopic comparisons of the pH dependencies of Fe-substituted-(Mn) superoxide dismutase and Fe-superoxide dismutase. Biochemistry 1998, 37:5518-5527. 21. Gratepanche S, Ménage S, Touati D, Wintjens R, Delplace P, Fontecave M, Masset A, Camus D, Dive D: Biochemical and electron paramagnetic resonance study of the iron superoxide dismutase from Plasmodium falciparum. Mol Biochem Parasitol 2002, 120:237-246. 22. Whittaker MM, Whittaker JW: Mutagenesis of a proton linkage pathway in Escherichia coli manganese superoxide dismutase. Biochemistry 1997, 36:8923-8931. 23. Vance CK, Miller A-F: Novel insights into the basis for E. coli SOD’s metal ion specificity, from Mn-substituted Fe-SOD and its very high Em. Biochemistry 2001, 40:13079-13087. 24. Vance CK, Miller A-F: A simple proposal that can explain the inactivity of metal-substituted superoxide dismutases. J Am Chem Soc 1998, 120:461-467. 25. Schwartz AL, Yikilmaz E, Vance CK, Vathyam S, Koder RL Jr, Miller A-F: Mutational and spectroscopic studies of the significance of the active site Gln to metal ion specificity in superoxide dismutase. J Inorg Biochem 2000, 80:247-256. 26. Yikilmaz E, Xie J, Miller A-F, Brunold TC: Hydrogen-bond mediated tuning of the redox potential of the non-heme Fe site of superoxide dismutase. J Am Chem Soc 2002, 124:3482-3483. Demonstration of a strongly elevated reduction potential despite preservation of native-like iron electronics in both oxidation states, as a result of conversion of an active site hydrogen bond donor into a hydrogen bond acceptor 27. Hearn AS, Stroupe ME, Cabelli DE, Ramilo CA, Luba JP, Tainer JA, Nick HS, Silverman DS: Catalytic and structural effects of amino acid substitution at histidine 30 in human manganese superoxide dismutase: insertion of valine Cc into the substrate access channel. Biochemistry 2003, 42:2781-2789. 28. Davis CA, Hearn AS, Fletcher B, Bickford J, Garcia JE, Leveque V, Melendez JA, Silverman DN, Zucali J, Agarwal A et al.: Potent antitumor effects of an active site mutant of human MnSOD: evolutionary conservation of product inhibition. J Biol Chem 2004, in press. Exciting experiments exploring the possible utility of Mn-SOD as a therapeutic. This paper is most interesting because of its comparison between the effects of expression of WT-Mn-SOD with those of expression of a mutant, which vindicate a mechanism-based design principle and support the novel notion that optimization of Mn-SOD’s turnover may be evolutionarily disfavored. 29. McCord JM, Fridovich I: Superoxide dismutase an enzymic function for erythrocuprein (hemocuprein). J Biol Chem 1969, 244:6049-6055. 16. Sorkin DL, Duong DK, Miller A-F: Mutation of tyrosine 34 to phenylalanine eliminates the active site pK of reduced Fe-SOD. Biochemistry 1997, 36:8202-8208. 30. Strange RW, Antonyuk S, Hough MA, Doucette PA, Rodriguez JA, Hart PJ, Hayward LJ, Valentine JS, Hasnain SS: The structure of holo and metal-deficient wild-type human Cu,Zn superoxide dismutase and its relevance to familial amyotrophic lateral sclerosis. J Mol Biol 2003, 328:877-891. 17. Tabares LC, Bittel C, Carrillo N, Bortolotti A, Cortez N: The single superoxide dismutase of Rhodobacter capsulatus is a 31. Bordo D, Pesce A, Bolognesi M, Stroppolo ME, Falconi M, Desideri A: Copper-zinc superoxide dismutase in prokaryotes www.sciencedirect.com Current Opinion in Chemical Biology 2004, 8:162–168 168 Bioinorganic chemistry and eukaryotes. In Handbook of Metalloproteins, vol. 2. Edited by Wieghardt K, Huber R, Poulos TL, Messerschmidt A: Chicester, New York, Weinheim, Brisbane, Singapore and Toronto: Wiley and Sons; 2001:1284-1300. A review of literature up to 2000. 45. Bruening W, Roy J, Giasson B, Figlewicz DA, Mushynski WE, Durham HD: Up-regulation of protein chaperones preserves viability of cells expressing toxic Cu/Zn-superoxide dismutase mutants associated with amyotrophic lateral sclerosis. J Neurochem 1999, 72:693-699. 32. Banci L, Bertini I, Cramaro F, Del Conte R, Viezzoli MS: The solution structure of reduced dimeric copper zinc superoxide dismutase. Eur J Biochem 2002, 269:1905-1915. 46. Williamson TL, Cleveland DW: Slowing of axonal transport is a very early event in the toxicity of ALS-linked SOD1 mutants to motor neurons. Nat Neurosci 1999, 2:50-56. 33. Banci L, Bertini I, Cramaro F, Del Conte R, Viezzoli MS: Solution structure of apo Cu,Zn superoxide dismutase: role of metal ions in protein folding. Biochemistry 2003, 42:9543-9553. 47. Tobisawa S, Hozumi Y, Arawaka S, Koyama S, Wada M, Nagai M, Aoki M, Itoyama Y, Goto K, Kato T: Mutant SOD1 linked to familial amyotrophic lateral sclerosis, but not wild-type SOD1, induces ER stress in COS7 cells and transgenic mice. Biochem Biophys Res Commun 2003, 303:496-503. This paper compares the effects of high and moderate expression of WT- and ALS-associated mutants of Cu,Zn-SOD. The data support attractive rationalizations for the late onset of ALS and its specificity to motor neurons. Note, however, that the systems employed are very complex. 34. Bermel W, Bertini I, Felli IC, Kümmerle R, Pierattelli R: 13 C direct detection experiments on the paramagnetic oxidized monomeric copper, zinc superoxide dismutase. J Am Chem Soc 2003, 125:116423-116429. 35. Potter SZ, Valentine JS: The perplexing role of copper-zinc superoxide dismutase in amyotrophic lateral sclerosis (Lou Gehrig’s disease). J Biol Inorg Chem 2003, 8:373-380. 36. Johnston JA, Dalton MJ, Gurney ME, Kopito RR: Formation of high molecular weight complexes of mutant Cu,Zn-superoxide dismutase in a mouse model for familial amyotrophic lateral sclerosis. Proc Natl Acad Sci USA 2000, 97:12571-12576. 37. Wiedau-Pazos M, Goto JJ, Rabizadeh S, Gralla EB, Roe JA, Lee MK, Valentine JS, Bredesen DE: Altered reactivity of superoxide dismutase in familial amyotrophic lateral sclerosis. Science 1996, 271:515-518. 38. Yim MB, Kang J-H, Yim H-S, Kwak H-S, Chock PB, Stadtman ER: A gain of function of an amyotropic lateral sclerosis-associated Cu,Zn-superoxide dismutase mutant: an enhancement of free radical formation due to a decrease in Km for hydrogen peroxide. Proc Natl Acad Sci USA 1996, 93:5709-5714. 39. Zhang H, Joseph J, Gurney M, Becker D, Kalyanaraman B: Bicarbonate enhances peroxidase activity of Cu,Znsuperoxide dismutase. J Biol Chem 2002, 277:1013-1020. Demonstration of elevated markers of oxidative damage in mouse neurons expressing an ALS-associated mutant of Cu,Zn-SOD. 40. Elam JS, Malek K, Rodriguez JA, Doucette PA, Taylor AB, Haywards LJ, Cabelli DE, Valentine JS, Hart PJ: An alternative mechanism of bicarbonate-mediated peroxidation by copperzinc superoxide dismutase. J Biol Chem 2003, 278:21032-21039. 41. Liochev SI, Fridovich I: Mutant Cu,Zn superoxide dismutases and familial amyotrophic lateral sclerosis: evaluation of oxidative hypotheses. Free Radic Biol Med 2003, 34:1383-1389. 42. Zhang H, Andrekopoulos C, Joseph J, Chandran K, Karoui H, Crow JP: Kalyanaraman: Bicarbonate-dependent peroxidase activity of human Cu,Zn-superoxide dismutase induces covalent aggregation of protein. J Biol Chem 2003, 278:24078-24089. A very thorough multifaceted paper that builds on and unites earlier works from several other laboratories. Thus, the references cited are also recommended reading. 43. Elam JS, Taylor AB, Strange RW, Antonyuk S, Doucette PA, Rodriguez JA, Hasnain SS, Hayward LJ, Valentine JS, Yeates TO et al.: Amyloid-like filaments and water-filled nanotubes formed by SOD1 mutant proteins linked to familial ALS. Nat Str Biol 2003, 10:461-467. Demonstration of extended b-sheet formation between Cu,Zn-SOD dimers upon destabilization of the Zn- and electrostatic loop. 44. Okado-Matsumoto A, Fridovich I: Amyotrophic lateral sclerosis: a proposed mechanism. Proc Natl Acad Sci USA 2002, 99:9010-9014. Current Opinion in Chemical Biology 2004, 8:162–168 48. Lindberg MJ, Tibell L, Oliveberg M: Common denominator of Cu/Zn superoxide dismutase mutants associated with amyotrophic lateral sclerosis: decreased stability of the apo state. Proc Natl Acad Sci USA 2002, 99:16607-16612. 49. Gunther MR, Peters JA, Sivaneri MK: Histidinyl radical formation in the self-peroxidation reaction of bovine copper-zinc superoxide dismutase. J Biol Chem 2002, 277:9160-9166. 50. Sherman MY, Goldberg AL: Cellular defenses against unfolded proteins: a cell biologist thinks about neurodegenerative diseases. Neuron 2001, 29:15-32. 51. Richardson JS, Richardson DC: Natural b-sheet proteins use negative design to avoid edge-to-edge aggregation. Proc Natl Acad Sci USA 2002, 99:2754-2759. 52. Takeuchi H, Kobayashi Y, Ishigaki S, Doyu M, Sobue G: Mitochondrial localization of mutant superoxide dismutase 1 triggers caspase-dependent cell death in a cellular model of familial amyotrophic lateral sclerosis. J Biol Chem 2002, 277:50966-50972. 53. Sturtz LA, Diekert K, Jensen LT, Lill R, Culotta VC: A fraction of yeast Cu,Zn-superoxide dismutase and its metallochaperone, CCS, localize to the intermembrane space of mitochondria. J Biol Chem 2001, 276:38084-38089. 54. Youn H-D, Kim E-J, Roe J-H, Hah YC, Kang S-O: A novel nickelcontaining superoxide dismutase from Streptomyces spp. Biochem J 1996, 318:889-896. 55. Wuerges J, Lee J-W, Kang A-O, Carugo KD: Crystallization of a nickel-containing superoxide dismutase and preliminary phase determination by MAD at the Ni K edge. Acta Crystallogr 2002, D58:1220-1223. 56. Choudhury SB, Lee J-W, Davidson G, Yim Y-I, Bose K, Sharma ML, Kang S-O, Cabelli DE, Maroney MJ: Examination of the nickel site structure and reaction mechanism in Streptomyces seoulensis superoxide dismutase. Biochemistry 1999, 38:3744-3752. 57. Bryngelson PA, Arobo SE, Pinkham JL, Cabelli DE, Maroney MJ: Expression, reconstitution and mutation of recombinant Streptomyces coelicolor NiSOD. J Am Chem Soc 2004, in press. 58. Szilagyi RK, Bryngelson PA, Maroney MJ, Hedman B, Hodgson KO, Solomon EI: S K-edge X-ray absorption spectroscopic investigation of the Ni-containing superoxide dismutase active site: new structural insight into mechanism. J Am Chem Soc 2004, in press. www.sciencedirect.com