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Journal of General Virology (1999), 80, 2639–2646. Printed in Great Britain ................................................................................................................................................................................................................................................................................... Envelope gene sequences encoding variable regions 3 and 4 are involved in macrophage tropism of feline immunodeficiency virus Thomas W. Vahlenkamp,1 Anthony De Ronde,2 Nancy N. M. P. Schuurman,1 Arno L. W. van Vliet,1 Judith van Drunen,1 Marian C. Horzinek1 and Herman F. Egberink1 1 Virology Unit, Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, Yalelaan 1, 3584 CL Utrecht, The Netherlands 2 Department of Human Retrovirology, Academic Medical Centre, Amsterdam, The Netherlands The envelope is of cardinal importance for the entry of feline immunodeficiency virus (FIV) into its host cells, which consist of cells of the immune system including macrophages. To characterize the envelope glycoprotein determinants involved in macrophage tropism, chimeric infectious molecular clones were constructed containing envelope gene sequences from isolates that had been propagated in peripheral blood mononuclear cells (PBMC). The progeny virus was examined for growth in PBMC and bone marrow-derived macrophages and viruses with different replication kinetics in macrophages were selected. Envelope-chimeric viruses revealed that nucleotide sequences encoding variable regions 3 and 4 of the surface glycoprotein, SU, are involved in macrophage tropism of FIV. To assess the biological importance of this finding, the phenotypes of envelope proteins of viruses derived from bone marrow, brain, lymph node and PBMC of an experimentally FIV-infected, healthy cat were examined. Since selection during propagation had to be avoided, provirus envelope gene sequences were amplified directly and cloned into an infectious molecular clone of FIV strain Petaluma. The viruses obtained were examined for their replication properties. Of 15 clones tested, 13 clones replicated both in PBMC and macrophages, two (brain-derived clones) replicated in PBMC only and none replicated in Crandell feline kidney cells or astrocytes. These results indicate that dual tropism for PBMC and macrophages is a common feature of FIV variants present in vivo. Introduction Feline immunodeficiency virus (FIV) is a lentivirus pathogen of domestic cats. FIV infection is characterized by an impairment of immune functions and a progressive depletion of CD4+ T lymphocytes (Ackley et al., 1990 ; Pedersen et al., 1987 ; Siebelink et al., 1990). Pathogenesis of FIV infection is similar to that of human immunodeficiency virus (HIV) infection in man, both leading to AIDS after an extended asymptomatic period (Pedersen et al., 1987 ; Yamamoto et al., 1988). In addition to CD4+ T cells, the tropism of FIV involves Author for correspondence : Thomas Vahlenkamp. Present address : Institute of Virology, Faculty of Veterinary Medicine, University of Leipzig, An den Tierkliniken 29, D-04103 Leipzig, Germany. Fax j49 341 9738219. e-mail vahlen!rz.uni-leipzig.de 0001-6297 # 1999 SGM CD8+ T cells, CD21+ B cells, astrocytes, megakaryocytes and monocytes\macrophages (Brunner & Pedersen, 1989 ; Dow et al., 1992 ; English et al., 1993 ; Pedersen et al., 1987). Certain FIV strains that were isolated from diseased cats also replicate in cells of the Crandell feline kidney (CRFK) line (Miyazawa et al., 1989 ; Nishimura et al., 1996 ; Phillips et al., 1990 ; Siebelink et al., 1992 ; Yamamoto et al., 1988). It is not known whether the phenotype of virus variants present in the asymptomatic phase of FIV infection differs from the phenotype present in the disease phase, as described in about 50 % of HIV-1-infected individuals (Tersmette et al., 1989). Differences have been found, however, between the infected cell populations at different times : early after infection, CD4+ T cells are the predominant cellular targets, and the proportion of infected macrophages increases during the acute flu-like illness. In the chronic stage, most infected cells are CD8+ T lymphocytes, B Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Fri, 16 Jun 2017 05:45:40 CGDJ T. W. Vahlenkamp and others lymphocytes and macrophages (Beebe et al., 1994 ; Dean et al., 1996 ; English et al., 1993). The envelope glycoprotein plays a key role in the initial virus–cell interaction, although other virus proteins may also be involved. The tropism of FIV for CRFK cells has been shown to be affected by the third variable (V3) region of the surface glycoprotein, SU (Siebelink et al., 1995 ; Verschoor et al., 1995), and by the ectodomain of the transmembrane (TM) glycoprotein (Vahlenkamp et al., 1997). The V3 region also contains a linear neutralization domain (de Ronde et al., 1994 ; Lombardi et al., 1993). FIV was shown to use CXCR4 for cell fusion and the V3 region was found to be involved in the interaction (Willett et al., 1997 a, b). Although having a different sequence, the V3 region of the viral envelope protein of HIV-1 is also important for tropism, cytopathicity and virus neutralization and is involved in the interaction with CCR5 and CXCR4, the main co-receptors used by the macrophagetropic and T cell-tropic HIV-1 isolates (Cao et al., 1993 ; Deng et al., 1996 ; Dragic et al., 1996 ; Feng et al., 1996 ; Levy, 1993 ; Wain-Hobson, 1996 ; Wild et al., 1993). Macrophages play an important role in the immune system as antigen-presenting cells (Beebe et al., 1994 ; Bendinelli et al., 1995 ; Levy, 1993) and they are probably also involved in FIV pathogenesis – by harbouring the virus and contributing to its dissemination in the organism. Only a few studies have addressed macrophage tropism (Beebe et al., 1994 ; Brunner & Pedersen, 1989 ; Power et al., 1998) ; FIV was shown to be present in peritoneal macrophages of cats infected with FIV strain Petaluma for 6–18 months. Cultures of peritoneal macrophages were found to be susceptible to infection with this strain, which had been propagated on CRFK cells (Brunner & Pedersen, 1989). By using in situ hybridization, Beebe et al. (1994) showed that the dominant cell type that was infected shifted from T lymphocytes to macrophages during the onset of primary disease. The shift might be due to cytopathic infection of T lymphocytes with subsequent selection of macrophage-tropic variants (Beebe et al., 1994). In an attempt to identify determinants of macrophage tropism, we focused on the FIV envelope glycoprotein. Chimeric infectious molecular clones derived from peripheral blood mononuclear cells (PBMC)-tropic and macrophagetropic viruses were constructed and progeny virus was examined for replication kinetics in macrophages and PBMC in vitro. The V3 and V4 regions of the FIV SU glycoprotein were indeed found to possess determinants involved in macrophage tropism. In order to get an impression of the phenotype of virus variants present in a persistently viraemic, experimentally infected healthy cat, we constructed infectious molecular clones by using envelope gene sequences derived directly from tissues of different body compartments. By using this approach, the tropism of variants present in vivo can be determined without introducing possible errors due to in vitro selection. Viruses derived from these clones were tested for their ability to replicate in feline PBMC, bone marrow-derived macroCGEA phages, primary astrocytes and CRFK cells. Our results indicate that dual tropism for PBMC and macrophages is a common feature of FIV variants present in vivo. Methods Cell culture. CRFK-HO6 cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 5 % foetal calf serum (FCS). Feline PBMC were maintained in Iscove’s medium supplemented with 200 U\ml recombinant interleukin-2 (Eurocetus), 2n5 µg\ml concanavalin A and 10 % FCS. Bone marrow-derived macrophages were prepared as described by Daniel et al. (1993) and cultured in Iscove’s medium supplemented with 15 % Hyclone serum and 2 mM glutamine. Primary astrocytes were obtained from newborn kittens, prepared essentially as described by Dow et al. (1992) and tested for glial fibrillary acidic protein positivity prior to infection. All culture media were supplemented with 100 µg\ml streptomycin and 100 IU\ml penicillin. Tissues and virus isolates. Virus isolates were obtained from the cerebrospinal fluid (CSF) and PBMC of a naturally FIV-infected cat that showed signs of central nervous system involvement by co-cultivation of uninfected feline PBMC. The virus isolates obtained (FIV-UT48), derived from the CSF and PBMC, were stored at k80 mC. Both virus isolates were used to infect feline PBMC and proviral DNA was isolated by using the method described by Boom et al. (1990). Tissues [bone marrow, brain (cortex, cerebellum), lymph node (mandibularis)] and PBMC were obtained from an experimentally FIVUT48-infected cat (no. 330). The cat was infected and kept under specified-pathogen-free conditions for more than 6 years, but did not show any clinical symptoms. Proviral DNA was isolated from the tissues and PBMC by using the method described by Boom et al. (1990). Amplification and cloning of envelope gene sequences. Gene sequences encoding the FIV envelope glycoprotein were amplified by using primers with flanking 5h MluI (ACGCGT) and 3h SalI (GTCGAC) restriction sites (underlined). Primer 217 consisted of the nucleotide sequence 5h TAGACGCGTAAGATTTTTAAGATACTCTGATG 3h (nt 6512–6543 ; Talbott et al., 1989) and primer 259 consisted of the sequence 5h CTTGTCGACTAAGTCTGAGATACTTCATCATTCCTCC 3h (nt 8861–8825). PCR was performed for 35 cycles by using the Expand Long Template reaction mixture (Boehringer Mannheim). Each cycle consisted of 1 min at 94 mC, 1 min at 55 mC and 2n5 min at 68 mC. The 50 µl reaction mixture contained 100 ng cellular DNA, 100 ng of each primer, 50 mM Tris–HCl (pH 9n2), 1n75 mM MgCl , # 14 mM (NH ) SO , 200 µM of each deoxynucleoside triphosphate and %# % 0n75 µl of the enzyme mixture. Amplification products were analysed on a 1 % agarose gel, purified from the gel by using a QIAquick kit (Qiagen) and digested with the restriction enzymes MluI and SalI. After preparative gel electrophoresis, the purified amplification products were cloned into pPETENV. This vector is basically identical to Pet-14 (Olmsted et al., 1989) but lacks flanking DNA sequences. In addition, pPETENV contains unique MluI and SalI restriction sites to allow selective exchange of envelope gene sequences (Verschoor et al., 1995). Exchange of envelope gene fragments. To construct envelopechimeric clones, the MluI–SalI fragments were first cloned into vector pSH, a derivative of pSP73 containing MluI and SalI cloning sites (Verschoor et al., 1995). Construction of chimeric clones 27\8 and 8\27 was performed by exchanging the MluI–NsiI (1293 bp) and NsiI–SalI (1045 bp) fragments between the parent clones 8 and 27. The resultant chimeric MluI–SalI fragments were subsequently cloned into pPETENV. Sequence analysis confirmed that the fragment exchanges were performed correctly. Exchange of the V3–V4 region was performed Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Fri, 16 Jun 2017 05:45:40 Macrophage tropism of FIV Fig. 1. Schematic representation of the leader (L), surface (SU) and transmembrane (TM) envelope regions of the parental and chimeric molecular clones. The restriction sites used for the exchange of the DNA fragments are indicated. Virus replication of the corresponding envelope-chimeric viruses was determined by measuring p24 production in the culture supernatant by an antigen-capture ELISA. similarly, except that the XbaI–NsiI (602 bp) fragments were exchanged between the parent clones 8 and 27, resulting in clones 8\27\8 and 27\8\27 (Fig. 1). Sequence analysis of the V3–V4 region was performed by generating PCR fragments of the clones by using the primers T7-273 (5h TAATACGACTCACTATAGGGACCTAATCAAACATGTATGTGG 3h ; T7 sequence in italics ; FIV-specific part from nt 7265–7286) and SP6-NsiI (5h ATTTAGGTGACACTATAGCTTTTGTCATATTGAAATGTAC 3h ; SP6 sequence in italics ; FIV-specific part from nt 7827–7806). The PCR fragments were sequenced by using SP6 and T7 Taq dye primers (Applied Biosystems) and the ThermoSequenase fluorescencelabelled primer cycle-sequencing kit (Amersham). The sequence products were analysed on an automatic DNA sequencer (model 377 ; Applied Biosystems). The sequences were aligned manually. Phylogenetic analysis of the V3–V4 regions of the clones was performed by the neighbourjoining method of the TREECON program (Van de Peer & De Wachter, 1994) rooted at the FIV-Petaluma sequence. The distance matrix was generated by Kimura’s two-parameter estimation (Kimura, 1980). Bootstrap analysis was done after 100 replicates. Transfection and infection experiments. Transfections were performed using the Lipofectamine reagent (Life Technologies) following the manufacturer’s instructions. DNA of the constructed molecular clones was transfected into 1n25i10& CRFK-HO6 cells grown overnight in a 24-well plate. Fifty µl aliquots of DMEM without FCS and antibiotics (DMEM−) were mixed with 0n5 µg DNA and with 2 µl Lipofectamine. The two reagents were mixed and left at room temperature for 15 min. CRFK-HO6 cells were rinsed with DMEM− and the 100 µl transfection mixture was added to the cultures for 5 min. DMEM− (100 µl) was added and cultures were incubated at 37 mC. After 4 h, 0n5 ml DMEM supplemented with 5 % FCS and antibiotics was added and the cells were incubated overnight. Cultures were rinsed with PBS and maintained in DMEM with 5 % FCS and antibiotics. CRFK-HO6 cells were monitored for p24 production by using an antigen-capture ELISA. For preparation of cell-free virus stocks, the culture supernatant was harvested on day 5, centrifuged, filtered (0n45 µm) and stored at k80 mC. Reverse transcriptase activity was determined as described by Pedersen et al. (1987) and cultures of feline PBMC, macrophages and astrocytes were infected with an equivalent of 5i10% c.p.m. Cultures were monitored at regular intervals for antigen production by measuring p24 in the supernatant. Results Characterization of envelope gene sequences involved in macrophage tropism Molecular clones containing envelope gene sequences were derived from a cat infected with isolate FIV-UT48. FIV isolates had been obtained after co-cultivation of CSF and PBMC with PBMC from uninfected cats. By using PCR, virus envelope sequences were cloned into an FIV-Petaluma background and the viruses obtained were examined for their replication kinetics in cultures of PBMC and macrophages. For detailed study, we selected clones 8 and 27 from PBMC cultures that did not replicate in CRFK cells. As shown in Fig. 2 (a), both clones replicated with similar kinetics in PBMC, virus antigen being detectable in the supernatant from day 4 onwards. However, the replication curves in macrophages were different. In three independent experiments, virus replication of clone 8 could be measured from day 8 onwards, whereas virus antigen in the supernatant of cultures infected with progeny of clone 27 was already detectable on day 4 (Fig. 2 b). In addition, the slope of virus production against time was different for the two viruses : clone 8 replicated slightly more slowly than clone 27. Construction of envelope-chimeric clones To identify virus determinants responsible for the different phenotypes, we constructed envelope-chimeric clones ; a schematic representation of the constructs derived from clones 8 and 27 is shown in Fig. 1. The MluI–NsiI fragment consisted of a part of the envelope leader sequence and encoded the V2, Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Fri, 16 Jun 2017 05:45:40 CGEB T. W. Vahlenkamp and others (a) 1.75 1.50 A450 1.25 1.00 0.75 0.50 0.25 4 8 11 15 18 Time post-infection (days) 22 4 8 11 15 18 Time post-infection (days) 22 (b) 1.75 1.50 A450 1.25 1.00 0.75 0.50 0.25 Fig. 2. Replication kinetics of viruses derived from clones 8 ($), 27 (4), 8/27/8 ( ) and 27/8/27 (>) in feline PBMC (a) and bone marrowderived macrophages (b). The experiments were repeated at least three times. The results of one representative experiment are shown. Virus antigen production was measured by p24 ELISA in the culture supernatant. V3 and V4 regions of the envelope glycoprotein. The XbaI–NsiI gene fragment encoded the V3 and V4 regions of the SU envelope glycoprotein. The results of the infection experiments with progeny of these clones are also summarized in Fig. 1. Virus derived from clone 8\27, with envelope genes consisting of the MluI–NsiI fragment (1293 bp) of clone 8 and the NsiI–SalI fragment (1045 bp) of clone 27, replicated similarly in PBMC and macrophages to virus from the parent clone 8 and the corresponding virus derived from clone 27\8 replicated with similar kinetics to virus from clone 27. Progeny of clone 8\27\8 [MluI–XbaI (602 bp) and NsiI– SalI fragments (1045 bp) derived from clone 8 and XbaI–NsiI fragment (691 bp) derived from clone 27] showed the same replication kinetics as virus from the parent clone, 27. Virus derived from the corresponding clone 27\8\27 showed the same phenotype as virus derived from the parent clone, 8 (Fig. 2). These results indicated that the envelope gene sequence encoding the V3–V4 region is involved in macrophage tropism of FIV. Sequence analysis of the envelope gene fragment The MluI–SalI DNA fragments of clone 27 (lymphotropic and macrophage tropic), 8 (lymphotropic with an impaired capacity to replicate in macrophages) and 46 were sequenced and the deduced amino acid sequences were analysed. Clone 46, which was derived from the CSF, was included because CGEC Fig. 3. Comparison of the deduced amino acid sequences of the XbaI–NsiI fragments from clones 8, 27 and 46. Clone 27 is lymphotropic and macrophage tropic whereas clones 8 and 46 are lymphotropic but have only limited or absent ability to replicate in macrophages. Sequence differences from clone 27, amino acid positions and the restriction sites for XbaI and NsiI are indicated. progeny virus replicated only in PBMC. Exchange of envelope fragments derived from this clone did not result in replication competent viruses, however. The amino acid sequences encoded by the XbaI–NsiI fragments are shown in Fig. 3. The amino acid changes between clone 27 and clone 8 present within the V3 and V4 regions were lysine to arginine (K R) at position 395, aspartic acid to glutamic acid (D E) at position 409, isoleucine to valine (I V) at position 413, proline to leucine (P L) at position 423, serine to threonine (S T) at position 429, asparagine to threonine (N T) at position 448, phenylalanine to leucine (F L) at position 452 and lysine to glutamic acid (K E) at position 478. When comparing clone 46 with clone 8, two amino acid changes were observed within the V3 region : arginine to lysine (R K) and glycine to arginine (G R) at positions 395 and 397, respectively. The P L change at position 423 resulted in the appearance of a potential N-glycosylation site in clones 8 and 46. The T N change at position 448, introducing an additional potential N-glycosylation site, was present in both clones 27 and 46. Cell tropism of infectious molecular clones derived from different cat tissues Tissue samples were obtained from a cat infected for 6 years with the FIV-UT48 isolate. Fifteen infectious molecular Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Fri, 16 Jun 2017 05:45:40 Macrophage tropism of FIV Table 1. Replication of FIV clones derived from different tissues Virus replication was determined by measuring p24 production in the culture supernatant by an antigencapture ELISA. , Not done. Replication in : Tissue Clone CFRK cells PBMC Macrophages Astrocytes Bone marrow 63 90 11 37 38 40 122 4 5 110 31 32 33 62 111 Pet k k k k k k k k k k k k k k k j j j j j j j j j j j j j j j j j j j j k j k j j j j j j j j j j k k k k k k k k k k k k k j Brain Lymph node PBMC pPet clones were constructed (Table 1). Two clones contained envelope gene sequences derived from the bone marrow (63, 90), three clones were derived from the lymph node (4, 5, 110) and five clones were isolated from each of brain tissue (11, 37, 38, 40, 122) and PBMC (31, 32, 33, 62, 111). An infectious clone containing the envelope gene sequence of FIV-Petaluma (pPet) with MluI and SalI restriction sites was included as a positive control. Except for two clones (37 and 40, which replicated in PBMC only) derived from the brain, all clones replicated in PBMC and macrophages. None of the 15 clones grew in either CRFK cells or astrocytes. The Petaluma clone (pPet) replicated in all four cell-culture systems tested. The V3–V4 envelope gene regions of clones containing envelope genes derived from different tissues of a cat infected for 6 years with FIV-UT48 were sequenced. Analysis revealed a close relatedness of these sequences and clones 27, 8 and 46 of the FIV-UT48 isolate. Differences were too small to show significant bootstrap values. No amino acids or glycosylation sites specific for the exclusively lymphotropic phenotype and present only in the brain-derived clones 37 and 40 (Table 1) and clone 46 could be identified. Discussion To characterize virus determinants involved in macrophage tropism, we selected clones with different phenotypes derived from PBMC-propagated FIV isolates : clone 8, which replicates well in PBMC but poorly in macrophages, and clone 27, which replicates well in both cell types. These clones differ de- monstrably in their glycoprotein gene sequences and the results obtained support the premise that determinants of macrophage tropism are present on the virus envelope. The construction of envelope-chimeric viruses revealed that the V3–V4 region of the SU envelope glycoprotein is important for macrophage tropism. The deduced amino acid sequence obtained from these clones showed that a potential Nglycosylation site at position 448 within the lympho- and macrophage-tropic clone 27 is shifted to position 422 in clone 8. The exclusively lymphotropic clone 46 contains potential N-glycosylation sites at both positions 422 and 448, suggesting that glycosylation at position 422 does not favour entry into macrophages. In HIV-1, glycosylation in the V3 region is involved in the binding of neutralizing antibodies, is lost upon prolonged culture in a T cell line and is related to the non-syncytium-inducing (NSI) versus syncytium-inducing (SI) character of the virus isolate ; all this suggests a role in HIV-1 entry (Back et al., 1994). Our lymphotropic clone, 46, also contained a glycine to arginine mutation at position 397, which adds a positively charged amino acid to the V3 region. Within the V3 region of HIV-1, basic amino acid substitutions or a loss of acidic amino acids are correlated with the T cell-tropic phenotype (Chesebro et al., 1992 ; De Jong et al., 1992 ; Fouchier et al., 1992 ; Shioda et al., 1994 ; Simmonds et al., 1991). The overall charge of the V3 region in clone 46 may influence the interaction between the V3 region and a cellular receptor. The V3 region of the SU envelope glycoprotein and the Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Fri, 16 Jun 2017 05:45:40 CGED T. W. Vahlenkamp and others ectodomain of the TM envelope glycoprotein of FIV have previously been shown to contain virus determinants for CRFK cell tropism (Siebelink et al., 1995 ; Vahlenkamp et al., 1997 ; Verschoor et al., 1995). These cell culture-adapted strains of FIV use the chemokine receptor CXCR4 for cell fusion (Willett et al., 1997 a, b, 1998, Poeschla & Looney, 1998). The same chemokine receptor is used by T cell line-adapted SI HIV1 strains, while NSI macrophage-tropic strains make use of the chemokine receptor CCR5 as second receptor (Deng et al., 1996 ; Dragic et al., 1996 ; Feng et al., 1996). However, the relationship between receptor usage and virus strains seems to be complex, and several dual-tropic strains of HIV-1 have been described (Doranz et al., 1996 ; Simmons et al., 1996). Our genotypically and phenotypically characterized FIV clones will be useful in the search for additional receptors and in elucidating the mechanisms involved in the broader cell tropism of FIV. The identification of determinants important for macrophage tropism in the V3 and V4 regions indicates evolutionary links between the basic entry mechanisms of FIV and HIV-1. By comparing virus and cellular determinants involved in cell tropism of FIV and HIV-1, factors responsible for the similar pathogenesis of the two lentivirus infections may be identified. The limited or absent capacity of clones 8 and 46 to replicate in macrophages could have been the result of their previous propagation in and adaptation to PBMC. To exclude this factor as a reason for the absence of macrophage tropism, we decided to clone envelope genes directly from tissues of an infected cat by PCR. We constructed 15 infectious molecular clones with envelope genes derived directly from cat tissues (bone marrow, brain, lymph node) and PBMC. All viruses containing the envelope gene sequences from PBMC, lymph node and bone marrow replicated in macrophages and PBMC. However, progeny of two (of five) clones derived from the brain showed a different phenotype : they replicated in PBMC only. The amino acid sequences of the V3–V4 region differed between all clones analysed. These clones are likely to differ at positions in the remainder of the envelope as well, which does not allow a direct comparison as could be done between the envelope chimeras of clones 27 and 8 (Fig. 1). By comparing all V3–V4 sequences, including clones 27, 8 and 46 from the first set of experiments, we could not identify amino acid positions or potential glycosylation sites in the V3–V4 region that were specific for the exclusively lymphotropic phenotype. This suggests that, rather than an individual amino acid, the conformation of the whole envelope protein and in particular of the V3–V4 region is responsible, as evidenced by the chimeric clones 8 and 27. Although unlikely, we cannot exclude PCR errors as the explanation for the absence of macrophage tropism. The phenotypes of these two clones are probably derived from variants with a tropism for cells of the central nervous system. None of the 15 clones replicated in primary feline astrocyte CGEE Fig. 4. Phylogenetic tree of a 417 bp fragment of the V3–V4 envelope region of clones of the FIV-UT48 isolate (clones 27, 8 and 46) and clones from different tissues of an FIV-UT48 infected cat. BM, Bone marrow ; BR, brain ; LN, lymph node. The tree included the FIV-UT113 and FIV-PPR sequences and was rooted at the FIV-Petaluma sequence (PET). Bootstrap values above 70 % are shown. cultures or CRFK cells. For primary HIV-1 isolates and laboratory strains, tropism for macrophages and microglial cells is highly overlapping (Watkins et al., 1990), but differences in tropism for microglial cells and macrophages have also been reported for some primary isolates (Strizki et al., 1996). Our non-macrophage-tropic clones obtained from the brain may therefore represent variants that preferentially infect microglial cells and not macrophages. Interestingly, the envelope gene of the exclusively lymphotropic clone 46 was derived from the CSF isolate of FIV-UT48. 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