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© 2008, Juliet R.C. Pulliam and Jonathan Dushoff. Some Rights Reserved. This work is Copyright Juliet R.C. Pulliam and Jonathan Dushoff 2008 and is made available under a Creative Commons Attribution Noncommercial Share Alike United States 3.0 License. You are free to copy, distribute, and modify this work, provided that you do not use the work for commercial purposes, you credit the authors, and you include a copy of this notice. If this work is used for academic purposes, the associated paper should be cited: Pulliam, JRC and Dushoff, J (2009) Ability to replicate in the cytoplasm predicts zoonotic transmission of livestock viruses. Journal of Infectious Diseases 199(4): 565568. DOI: 10.1086/596510 If you modify this work, you may distribute the resulting derivative work only under the same or a similar license to this one and with proper attribution of the original work, as stated above. To see further details of this license, including a link to the legal code, visit http://creativecommons.org/licenses/by-nc-sa/3.0/. NOTE: THIS DOCUMENT INCLUDES ALL VIRUS GENERA KNOWN TO INFECT VERTEBRATE HOSTS ACCORDING TH TO THE 8 REPORT OF THE INTERNATIONAL COMMITTEE ON THE TAXONOMY OF VIRUSES. PAGE NUMBERS REFER TO PAGES IN THE REPORT CORRESPONDING TO EACH GENUS. Family Genus* Start page Complete?† Orthopoxvirus Parapoxvirus Avipoxvirus Capripoxvirus Leporipoxvirus Suipoxvirus Molluscipoxvirus Yatapoxvirus 122 123 124 125 126 127 127 128 completed completed avian completed completed completed human completed Unassigned 132 completed Asfivirus 135 completed (dsDNA viruses) Poxviridae Chordopoxvirinae Unassigned Asfarviridae * † Genera listed in bold are those that include virus species in the database. If searches were not done for a genus, the reason for exclusion is given (eg, if no virus species in the genus are known to infect mammals, if all virus species in the genus are thought to be maintained through continuous transmission in humans, or if all virus species in the genus require co-infection with another virus species to complete the replication cycle). Iridoviridae Ranavirus Lymphocystivirus Megalocytivirus Unassigned 154 156 158 160 amphib/fish fish fish ectotherms Simplexvirus Varicellovirus Mardivirus Iltovirus Unassigned 199 200 201 202 202 completed completed avian avian completed Cytomegalovirus Muromegalovirus Roseolovirus Unassigned 203 204 204 205 completed completed human completed Lymphocryptovirus Rhadinovirus Unassigned 205 206 207 completed completed completed Ictalurivirus Unassigned 208 208 fish completed Mimivirus 275 completed Mastadenovirus Aviadenovirus Atadenovirus Siadenovirus Unassigned 213 221 223 225 226 completed avian completed avian/reptilian fish Polyomavirus 231 completed Alphapapillomavirus 239 Betapapillomavirus 245 Gammapapillomavirus Deltapapillomavirus 247 Epsilonpapillomavirus Zetapapilomavirus 247 Etapapillomavirus 248 human human human completed completed completed avian Herpesviridae Alphaherpesvirinae Betaherpesvirinae Gammaherpesviridae Unassigned Unassigned Adenoviridae Polyomaviridae Papillomavirus Page 2 of 6 Thetapapillomavirus 248 Iotapapillomavirus 249 Kappapapillomavirus 249 Lambdapapillomavirus Mupapillomavirus 250 Nupapillomavirus 250 Xipapillomavirus 251 Omikronpapillomavirus Pipapallomavirus 251 Unassigned 252 avian completed completed completed human human completed completed completed completed Circovirus Gyrovirus 328 331 completed completed Anellovirus 335 completed Parvovirus Erythrovirus Dependovirus Amdovirus Bocavirus 358 360 361 363 364 completed completed completed completed completed Orthohepadnavirus Avihepadnavirus Unassigned 379 382 383 completed avian completed Alpharetrovirus Betaretrovirus Gammaretrovirus Deltaretrovirus Epsilonretrovirus Lentivirus 425 427 428 431 432 433 compeled completed completed completed completed completed Spumavirus 437 completed (ssDNA viruses) Circoviridae Unassigned Parvoviridae Parvovirinae (reverse transcribing viruses) Hepadnaviridae Retroviridae Orthoretrovirinae Spumaretrovirus (dsRNA viruses) Page 3 of 6 Reoviridae Orthoreovirus Orbivirus Rotavirus Coltivirus Seadornavirus Aquareovirus 455 466 484 497 504 511 completed completed completed completed completed fish/inverts Aquabirnavirus Avibirnavirus Unassigned 565 566 567 fish/invert avian fish/invert Bornavirus 615 completed Vesiculovirus Lyssavirus Ephemerovirus Novirhabdovirus Unassigned 629 630 633 635 639 completed completed completed fish completed Marburgvirus Ebolavirus 650 651 completed completed Rubulavirus Avulavirus Respirovirus Henipavirus Morbillivirus 659 661 662 663 663 completed completed completed completed completed Pneumovirus Metapneumovirus 665 666 completed completed Unassigned 666 completed Influenzavirus A‡ 685 human Birnaviridae (negative-stranded ssRNA viruses) Bornaviridae Rhabdoviridae Filoviridae Paramyxoviridae Paramyxovirinae Pneumovirinae Unassigned Orthomyxoviridae ‡ Influenzavirus A is considered to be maintained in humans due to the fact that some strains are continuously transmitted in humans, despite the fact that avian hosts are the primary reservoir of genetic diversity. Primary analyses are performed with Influenza A Page 4 of 6 Influenzavirus B Influenzavirus C Thogotovirus Isavirus 687 688 689 691 human human completed fish Orthobunyavirus Hantavirus Nairovirus Phlebovirus Unassigned 699 704 707 709 713 completed completed completed completed completed Arenavirus 725 completed Deltavirus 735 dependent Enterovirus Rhinovirus Cardiovirus Aphthovirus Hepatovirus Parechovirus Erbovirus Kobuvirus Teschrovirus Unassigned 760 764 767 768 770 771 772 773 774 775 completed completed completed completed completed completed completed completed completed completed Lagovirus Norovirus Sapovirus Vesivirus Unassigned 846 847 848 848 849 completed completed completed completed completed Hepevirus 853 completed Avastrovirus Mamastrovirus 861 861 avian completed Bunyaviridae Arenaviridae Unassigned (positive-stranded ssRNA viruses) Picornaviridae Caliciviridae Unassigned Astroviridae excluded from the database; however, all analyses were also repeated with Influenza A included in the dataset to determine the robustness of the observed results. See text for details and results. Page 5 of 6 Nodaviridae Betanodavirus 869 fish Coronavirus Torovirus 947 956 completed completed Arterivirus 965 completed Flavivirus Pestivirus Hepacivirus Unassigned 981 988 993 996 completed completed completed completed Alphavirus Rubivirus 999 1006 completed completed Araguari virus 1131 completed Johnston Atoll virus 1131 completed Anymanini virus 1131 completed Quaranfil virus 1132 completed Coronaviridae Arteriviridae Flaviviridae Togaviridae (unassigned vertebrate viruses) Page 6 of 6
