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Evolution and Natural Selection Part One Evolution Evolution and Natural Selection Natural selection is a major mechanism of evolution. Evidence of Evolution Evolution—change in a population’s genetic makeup over time. According to Darwin’s theory of natural selection, competition for limited resources results in differential survival. Individuals with more favorable phenotypes are more likely to survive and produce more offspring, thus passing on their traits to future generations. On the Origin of Species by Means of Natural Selection by Charles Darwin Darwin hypothesized that all life descended from a common ancestor. Natural Selection: Darwin’s proposed mechanism for evolution — a population can change over time if individuals with more fit traits leave more offspring than less fit individuals Darwin’s background • Loved nature, studied to be a clergyman • Went on HMS Beagle for voyage around the world In the Galapagos Islands, Darwin saw animals that were similar to the mainland but slightly different on each island. Darwin inferred that adaptation to environment and origin of new species are related. Summary of Darwin's theory: OBSERVATION 1: If all individuals born reproduce successfully, a population will increase exponentially. OBSERVATION 2: But populations remain stable. OBSERVATION 3: Resources are limited INFERENCE 1: Production of more individuals than can be supported by the environment leads to a struggle for existence, with only a fraction of offspring surviving each generation OBSERVATION 4: Members of a population vary extensively OBSERVATION 5: Variation is heritable INFERENCE 2: Fitness: Individuals whose inherited traits confer an advantage have a better chance of surviving in a given environment and will leave more offspring INFERENCE 3: Unequal fitness will lead to gradual change in a population, with favorable traits accumulating over generation Over time, a population might eventually accumulate enough change to become a new species ***Evolutionary fitness is measured by reproductive success. Genetic variation and mutation play roles in natural selection. A diverse gene pool is important for the survival of a species in a changing environment. Environments can be more or less stable or fluctuating, and this affects evolutionary rate and direction. An adaptation is a genetic variation that is favored by selection and is manifested as a trait that provides an advantage to an organism in a particular environment. In addition to natural selection, chance and random events can influence the evolutionary process, especially for small populations. Natural Selection Acts On Phenotype Part Two Natural selection acts on phenotypic variations in populations. Environments change and act as selective mechanism on populations. The environment does not directly cause changes in DNA, but acts upon phenotypes that occur through random changes in DNA Example: Flowering time in relation to global climate change Crop production is sensitive to climate change; temperature has a large impact on the rate of plant development. Warmer temperatures will mean reduced crop yields. Example: Peppered moth The light phenotype was favored before the Industrial Revolution. The color blended with the tree bark. After the Industrial Revolution, mostly dark colored moths were seen. They had an advantage on dark tree bark. Phenotypic variations are not directed by the environment but occur through random changes in the DNA and through new gene combinations. effects) or result in a new phenotype. Some phenotypic variations significantly increase or decrease fitness of the organism and the population. Example: Sickle cell anemia and Heterozygote Advantage Sickle cell disease is caused by a single base substitution mutation. It is maintained in the population in a state of balanced polymorphism because of the protective effect against severe forms of malaria conferred by the heterozygous states. Rock Pocket Mouse Video and Worksheet Example: DDT resistance in insects Pesticide-Resistant Organisms: • Super Rats that can consume up to five times the lethal amount of rat poison • Head lice resistant to treatment • DDT no longer effective against disease vectors such as mosquitoes • Fruit flies resistant to malathion • The Colorado potato beetle has evolved resistance to 52 different compounds belonging to all major insecticide classes (multiple resistance) Pesticide Resistance http://www.pbs.org/wgbh/evolution/library/10/1/image_pop/l_101_02.html Humans impact variation in other species. Example: Artificial selection Example: Loss of genetic diversity within a crop species Example: Overuse of antibiotics leading to increase in antibiotic resistant bacteria. Biggest problem: overuse and improper use of antibiotics, especially in livestock. Some evidence that evolution continues to occur: • Increase in antibiotic-resistant bacteria such as MRSA and Clostridium difficile • Evolution of the SARS virus and other emergent diseases • Lactose tolerance in Europeans • Butterflies in the South Pacific have evolved resistance to a killer bacteria in a single year Stickleback • Video and Worksheet What is Population Genetics? The study of changes in the genetic makeup of populations. An important concept in population genetics is the Gene Pool: All the alleles in all the individuals that make up a population. What was the result? Population Genetics Remember, individuals do not evolve, populations do. Natural Selection + Genetics Population- a group of individuals of a single species that live in a specific area. • Five Fingers of Evolution Microevolution- is evolution on the smallest scale – a generation-to-generation change in the frequencies of alleles within a population. Ex: Peppered Moth Macroevolution- major biological changes that are clearly visible. Ex: Development of an entire new species Directional Selection is most common when an environment changes. One phenotype favored over another. Directional Selection If only large seeds were available, birds with larger beaks would have an easier time feeding and would be more successful in surviving and passing on genes. Stabilizing selection maintains the status quo by favoring the mean phenotype. Example: human birth weight Stabilizing Selection Very small and very large babies are less likely to survive than average-sized individuals. The fitness of these smaller or larger babies is therefore lower than that of more average-sized individuals. Distruptive selection occurs when the extreme phenotypes are favored. May lead to speciation. Disruptive Selection In an area where medium-sized seeds are less common, birds with unusually small or large beaks would have higher fitness. Therefore, the population might split into two groups—one with smaller beaks and one with larger beaks. Example: Wood Frog and Leopard Frog Wood Frog Breeds in early April Leopard Frog Breeds in mid-April geographic variation – difference in variation between population subgroups in different areas Genetic Drift Genetic drift occurs in small populations when an allele becomes more or less common simply by chance. Genetic drift is a random change in allele frequency. Bottleneck Effect The bottleneck effect is a change in allele frequency following a dramatic reduction in the size of a population. For example, a disaster may kill many individuals in a population, and the surviving population’s gene pool may contain different gene frequencies from the original gene pool. Founder Effect The founder effect occurs when allele frequencies change as a result of the migration of a small subgroup of a population. Founder Effect Two groups from a large, diverse population could produce new populations that differ from the original group. The Hardy-Weinberg Law: If evolution can be defined as a change in gene (or more appropriately, allele) frequencies, is it conversely true that a population not undergoing evolution should maintain a stable gene frequency from generation to generation? This was the question that Hardy and Weinberg answered independently. The Hardy-Weinberg Law: The condition in which Gene (allele) frequencies do not change from one generation to the next. The population is said to be in genetic equilibrium. What conditions must be met for the HardyWeinberg Law to hold true? The gene pool remains the same from generation to generation. Five conditions must be met………. • 1) Large Populations – In small populations alleles of low frequency might be lost by the death of a few individuals “Genetic Drift” • 2) No Migration – Individuals may not migrate into or out of the population • 3) No Mutations – These will change the frequency of the alleles in the population • 4) No Natural Selection – Each member of the population must survive long enough to have offspring • 5) Random Mating – Each member of the population must have an equal chance to reproduce Population Genetics • The Hardy-Weinberg law does NOT apply to situations in the real world! • Mutations occur spontaneously • Reproduction is NOT random • Natural selection DOES occur Population Genetics • The failure of HardyWeinberg Law is a sign that evolution is occurring! Hardy-Weinberg Equation: p2 + 2pq + q2 = 1 and p+q=1 p = frequency of the dominant allele in the population q = frequency of the recessive allele in the population p2 = percentage of homozygous dominant individuals q2 = percentage of homozygous recessive individual 2pq = percentage of heterozygous individuals Population Genetics • Example 30% of a population of apple rose that show the recessive phenotype of a yellow color as opposed to the dominant phenotype of green color What is the frequency recessive allele and what is the frequency of the dominant allele? • p+q=1 • Where p = dominant allele • q = recessive allele • q2 = .30 q = √.30 = .55 q = .55 p+q=1 P + .55 = 1 p = .45 Population Genetics • What % of the apple roses that are heterozygous for color? now use: p2 + 2pq + q2 = 1 Population Genetics Heterozygous is 2pq 2 (.45 x .55 ) = .50 50% are heterozygous PROBLEM #1. You have sampled a population in which you know that the percentage of the homozygous recessive genotype (aa) is 36%. Using that 36%, calculate the following: • The frequency of the "aa" genotype. • The frequency of the "a" allele. • The frequency of the "AA and Aa" • The frequencies of the genotypes "AA" and "Aa." PROBLEM #1. • • The frequency of the "aa" genotype. Answer: 36%, as given in the problem itself. • • The frequency of the "a" allele. Answer: Since the frequency of aa is 36%. which means that q2 = 0.36. If q2 = 0.36, then q = 0.6, again by definition. Since q equals the frequency of the a allele, then the frequency is 60%. • • The frequency of the "A" allele. Answer: Since q = 0.6, and p + q = 1, then p = 0.4; the frequency of A is by definition equal to p, so the answer is 40%. PROBLEM #1. The frequencies of the genotypes "AA" and "Aa." Answer: The frequency of AA is equal to p2, and the frequency of Aa is equal to 2pq. So, using the information above, the frequency of AA is 16% (i.e. p2 is 0.4 x 0.4 = 0.16) and Aa is 48% (2pq = 2 x 0.4 x 0.6 = 0.48). • Bozeman on Natural Selection • Bozeman on Genetic Drift