Folie 1 - NETTAB
... Hospital Bonn participated in the Boston Children’s Hospital’s CLARITY challenge. ...
... Hospital Bonn participated in the Boston Children’s Hospital’s CLARITY challenge. ...
KAIE LOKK Comparative genome-wide DNA methylation
... (5mC), and this methylated form of cytosine is considered the “fifth” DNA base. Methylated cytosines have a crucial role in mammalian development, and the proportion of methylated CpG sites can vary greatly over a genome. Repeated sequences tend to be the most heavily methylated, while CpG-rich regu ...
... (5mC), and this methylated form of cytosine is considered the “fifth” DNA base. Methylated cytosines have a crucial role in mammalian development, and the proportion of methylated CpG sites can vary greatly over a genome. Repeated sequences tend to be the most heavily methylated, while CpG-rich regu ...
Phosphorus partitioning of soybean lines containing different mutant
... paralog (Glyma03g32500:lpa1-a; For clarity of presentation in this study, nonsense mutations will be indicated by presence of bold type) and a missense R1039K substitution affecting an ancestrally invariant residue within the second paralog (Glyma19g35230:lpa2-a) in EMS induced mutant line M153 (Wil ...
... paralog (Glyma03g32500:lpa1-a; For clarity of presentation in this study, nonsense mutations will be indicated by presence of bold type) and a missense R1039K substitution affecting an ancestrally invariant residue within the second paralog (Glyma19g35230:lpa2-a) in EMS induced mutant line M153 (Wil ...
biojeopardy evolution
... A population of birds on the coast range in size from 9-15cm, with the majority of birds being 12 cm. Another population of birds exist on a distant island off the same coastline, but all the birds are 15cm. What is the most likely explanation for difference in sizes of members of these populations ...
... A population of birds on the coast range in size from 9-15cm, with the majority of birds being 12 cm. Another population of birds exist on a distant island off the same coastline, but all the birds are 15cm. What is the most likely explanation for difference in sizes of members of these populations ...
Genomic rearrangements account for more than one
... in the Dutch patients (2). However, in most cases, these studies were probably limited by the complexity and sensitivity of the technical approaches employed. For instance, in order to achieve a good accuracy, the commonly used Southern blot analysis should be carried out using several well-designed ...
... in the Dutch patients (2). However, in most cases, these studies were probably limited by the complexity and sensitivity of the technical approaches employed. For instance, in order to achieve a good accuracy, the commonly used Southern blot analysis should be carried out using several well-designed ...
Multiple Roles of the Y Chromosome in the Biology of
... It is generally accepted that the sex chromosomes of most animals arose from a couple of homologous autosomes after the acquisition of a dominant sex determination gene[17,18] and that the Y chromosome is the result of the degeneration of one of them[19,20,21]. Its degeneration would be a consequenc ...
... It is generally accepted that the sex chromosomes of most animals arose from a couple of homologous autosomes after the acquisition of a dominant sex determination gene[17,18] and that the Y chromosome is the result of the degeneration of one of them[19,20,21]. Its degeneration would be a consequenc ...
Introduction
... genes contained within the T-DNA, such as opine synthesis genes, are expressed, which leads the creation of a hospitable environment for the bacteria. Agrobacterium has been an important tool for plant molecular biologists since it was discovered that the left and right borders of the T-DNA is all ...
... genes contained within the T-DNA, such as opine synthesis genes, are expressed, which leads the creation of a hospitable environment for the bacteria. Agrobacterium has been an important tool for plant molecular biologists since it was discovered that the left and right borders of the T-DNA is all ...
Slides: background and project plan
... • Codon - a triplet of bases, codes a specific amino acid (except the stop codons); many-to-1 relation • Stop codons - signal termination of the protein synthesis process ...
... • Codon - a triplet of bases, codes a specific amino acid (except the stop codons); many-to-1 relation • Stop codons - signal termination of the protein synthesis process ...
Role of base-backbone and base-base interactions
... helical twist than the average (Table 1). In contrast, the YR steps in B-DNA and in the protein complexes are characterised with high standard deviations in roll, helical twist, and slide parameters, and thus these are more flexible than the others. The slide parameter at YR steps is positive on the ...
... helical twist than the average (Table 1). In contrast, the YR steps in B-DNA and in the protein complexes are characterised with high standard deviations in roll, helical twist, and slide parameters, and thus these are more flexible than the others. The slide parameter at YR steps is positive on the ...
Synapsis-Mediated Fusion of Free DNA Ends Forms Inverted Dimer Plasmids in Yeast.
... the other hand, join end-to-end in an apparently nonhomologous reaction (ORR-WEAVERand SZOSTAK 1983; SUZUKIet al. 1983). Such end-to-end joining products arerecovered exclusively on transformation with a plasmid linearized in region lacking homology with the yeast genome (KUNES, BOTSTEINand Fox 1985 ...
... the other hand, join end-to-end in an apparently nonhomologous reaction (ORR-WEAVERand SZOSTAK 1983; SUZUKIet al. 1983). Such end-to-end joining products arerecovered exclusively on transformation with a plasmid linearized in region lacking homology with the yeast genome (KUNES, BOTSTEINand Fox 1985 ...
Natural rules for Arabidopsis thaliana
... genomics and functional genome over many major species provides scientists the opportunity to review and analyze those confirmed sequence data by using different bioinformatical means and allows them to illustrate the potential mechanism of pre-mRNA splicing. Some researchers have applied large conf ...
... genomics and functional genome over many major species provides scientists the opportunity to review and analyze those confirmed sequence data by using different bioinformatical means and allows them to illustrate the potential mechanism of pre-mRNA splicing. Some researchers have applied large conf ...
Transcription
... common s factor in E. coli is s70. 2. Binding of the s factor converts the core RNA pol into the holoenzyme. 3. s factor is critical in promoter recognition, by decreasing the affinity of the core enzyme for non-specific DNA sites (104) and increasing the affinity for the corresponding promoter 4. s ...
... common s factor in E. coli is s70. 2. Binding of the s factor converts the core RNA pol into the holoenzyme. 3. s factor is critical in promoter recognition, by decreasing the affinity of the core enzyme for non-specific DNA sites (104) and increasing the affinity for the corresponding promoter 4. s ...
Phylogenetic Relationships between the Western Aster Yellows
... were used to make phylogenetic comparisons between prokaryotes (10, 57, 58). Comparative analyses of full-length 16s rRNA genes have allowed an even more detailed evaluation of phylogenetic relationships among microorganisms. Evolutionary distances between organisms are calculated on the basis of th ...
... were used to make phylogenetic comparisons between prokaryotes (10, 57, 58). Comparative analyses of full-length 16s rRNA genes have allowed an even more detailed evaluation of phylogenetic relationships among microorganisms. Evolutionary distances between organisms are calculated on the basis of th ...
Development and characterization of DehaloR^2, a novel anaerobic
... methane in the initial microcosms (data not shown). In the abiotic controls, no TCE reductive dechlorination byproducts were detected over the course of the experiment. In contrast to the microcosms, the sediment-free DehaloR^2 consortium rapidly dechlorinated 320 μM TCE to ethene within 10 days wit ...
... methane in the initial microcosms (data not shown). In the abiotic controls, no TCE reductive dechlorination byproducts were detected over the course of the experiment. In contrast to the microcosms, the sediment-free DehaloR^2 consortium rapidly dechlorinated 320 μM TCE to ethene within 10 days wit ...
Fulltext PDF - Indian Academy of Sciences
... an introgression line 31505-1 were then obtained in derivatives of 31504. All, 31504, 31505 and 31505-1, were 50–55 cm high, about 30 cm lower than wheat parent Lumai 5. The results indicated that these three dwarfing lines probably had the same reduce height gene from Th. ponticum. Since no current ...
... an introgression line 31505-1 were then obtained in derivatives of 31504. All, 31504, 31505 and 31505-1, were 50–55 cm high, about 30 cm lower than wheat parent Lumai 5. The results indicated that these three dwarfing lines probably had the same reduce height gene from Th. ponticum. Since no current ...
Genetic mapping of mutations using phenotypic pools and
... window size until it reaches a minimum characteristic of the amplification potential. Thus, for any given amplification potential, there is a maximum pool size above which no further reductions in window size are obtained. We were surprised at the periodic nature of the data presented in Fig. 2C. Fo ...
... window size until it reaches a minimum characteristic of the amplification potential. Thus, for any given amplification potential, there is a maximum pool size above which no further reductions in window size are obtained. We were surprised at the periodic nature of the data presented in Fig. 2C. Fo ...
A Community-Based Annotation Framework for
... and Arabidopsis (Arabidopsis thaliana; Arabidopsis Genome Initiative, 2000), benefited from large functional annotation efforts that relied on large numbers of professional curators. In plant biology, the Arabidopsis genome annotation was notably successful. Today, it provides a basis for genome ann ...
... and Arabidopsis (Arabidopsis thaliana; Arabidopsis Genome Initiative, 2000), benefited from large functional annotation efforts that relied on large numbers of professional curators. In plant biology, the Arabidopsis genome annotation was notably successful. Today, it provides a basis for genome ann ...
pdf
... nitrogen sink. Although denitrification has long been believed to be the major process responsible for fixed nitrogen loss from the oceans, recent studies show that anaerobic ammonium oxidation (anammox) is potentially a more important process involved. We have investigated the phylogeny of both ana ...
... nitrogen sink. Although denitrification has long been believed to be the major process responsible for fixed nitrogen loss from the oceans, recent studies show that anaerobic ammonium oxidation (anammox) is potentially a more important process involved. We have investigated the phylogeny of both ana ...
Analysis continued Each TopHat run will result in four files: a list of
... Running CuffCompare results in a number of different datasets. The transcript accuracy dataset calculates the accuracy of each of the transcripts as compared to the reference at various levels (nucleotide, exon, intron, transcript, gene), e.g., how often an exon that was predicted by the output from ...
... Running CuffCompare results in a number of different datasets. The transcript accuracy dataset calculates the accuracy of each of the transcripts as compared to the reference at various levels (nucleotide, exon, intron, transcript, gene), e.g., how often an exon that was predicted by the output from ...
Standard
... (Medicago) as it has a number of attractive advantages. Flowering in Medicago is regulated by vernalisation and long day length, it has diploid in-breeding genetics, a moderate-sized sequenced genome of about 550 Mb and large mutant populations (Clarkson and Russell, 1975; Benlloch et al., 2006; Ros ...
... (Medicago) as it has a number of attractive advantages. Flowering in Medicago is regulated by vernalisation and long day length, it has diploid in-breeding genetics, a moderate-sized sequenced genome of about 550 Mb and large mutant populations (Clarkson and Russell, 1975; Benlloch et al., 2006; Ros ...
Relatedness in the post-genomic era: is it still
... levels of relatedness. We used a Type B simulation (see Supplementary information S1 (box)). From the current generation, we drew 4 samples of 1,250 individuals, first with no filtering so that siblings were included, followed by filtering to exclude close relatives (the x axis labels indicate the ...
... levels of relatedness. We used a Type B simulation (see Supplementary information S1 (box)). From the current generation, we drew 4 samples of 1,250 individuals, first with no filtering so that siblings were included, followed by filtering to exclude close relatives (the x axis labels indicate the ...
Package ‘GenomicFeatures’ October 14, 2014
... functions for making your own custom TxDb object from various annotation resources. • The BSgenome, TwoBitFile, and FaFile classes, defined and documented in the BSgenome, rtracklayer, and Rsamtools packages, respectively. • The TxDb class. • The genes function for extracting gene ranges from a TxDb ...
... functions for making your own custom TxDb object from various annotation resources. • The BSgenome, TwoBitFile, and FaFile classes, defined and documented in the BSgenome, rtracklayer, and Rsamtools packages, respectively. • The TxDb class. • The genes function for extracting gene ranges from a TxDb ...
Single-Nucleotide Polymorphism Mapping
... density is approximately one per kilobase of DNA (3), and to date more than 15,000 SNPs have been identified. Thus, SNP mapping can provide data on very small intervals, and in some cases is capable of mapping to single-gene resolution. Most SNP mapping experiments begin with chromosome mapping (als ...
... density is approximately one per kilobase of DNA (3), and to date more than 15,000 SNPs have been identified. Thus, SNP mapping can provide data on very small intervals, and in some cases is capable of mapping to single-gene resolution. Most SNP mapping experiments begin with chromosome mapping (als ...
