network - bioinf leipzig
... The model based on experimental evidence in yeast organizes TFs in a stratified nature of three distinct layers: the top, core, and bottom layers. TFs within a layer are highly interconnected and share similar properties. TFs of the different layers regulate distinct sets of targets genes. The three ...
... The model based on experimental evidence in yeast organizes TFs in a stratified nature of three distinct layers: the top, core, and bottom layers. TFs within a layer are highly interconnected and share similar properties. TFs of the different layers regulate distinct sets of targets genes. The three ...
this help page as PDF
... To better model sequence differences that are located within exons we have introduced the new adjustable parameter --min_intron_len. The --min_intron_len parameter has been implemented for those cases that leave additional target sequence after mapping the query sequence. By default, every insertion ...
... To better model sequence differences that are located within exons we have introduced the new adjustable parameter --min_intron_len. The --min_intron_len parameter has been implemented for those cases that leave additional target sequence after mapping the query sequence. By default, every insertion ...
abstracts
... Prunus and Arabidopsis, but conserved regions have been detected including 23% of the Prunus genetic distance and 17% of the Arabidopsis total sequence. The position of more than 30 major genes has been established in the reference map of this genus using data from different populations that are anc ...
... Prunus and Arabidopsis, but conserved regions have been detected including 23% of the Prunus genetic distance and 17% of the Arabidopsis total sequence. The position of more than 30 major genes has been established in the reference map of this genus using data from different populations that are anc ...
Journal of Bacteriology
... export of protein. A hydropathy profile of the predicted amino acid sequence, made with the algorithm of Engelman et al. (7), is shown in Fig. 3. Almost the entire length of the protein appears to be very hydrophilic, which is consistent with its presence in the growth medium. Furthermore, the prote ...
... export of protein. A hydropathy profile of the predicted amino acid sequence, made with the algorithm of Engelman et al. (7), is shown in Fig. 3. Almost the entire length of the protein appears to be very hydrophilic, which is consistent with its presence in the growth medium. Furthermore, the prote ...
PcGs and Hox genes - Development
... Psc-Su(z)2 and ph0 mutant clones The group 1 mutants Psc-Su(z)2 and ph0 show the most severe phenotypes of all PcG mutants (Figs 1, 2). First, both PscSu(z)2 and ph0 mutant clones show strong misexpression of all three Hox genes, although the timing of misexpression differs for each Hox gene. High l ...
... Psc-Su(z)2 and ph0 mutant clones The group 1 mutants Psc-Su(z)2 and ph0 show the most severe phenotypes of all PcG mutants (Figs 1, 2). First, both PscSu(z)2 and ph0 mutant clones show strong misexpression of all three Hox genes, although the timing of misexpression differs for each Hox gene. High l ...
Genetic mapping of Theobroma cacao (Malvaceae - Funpec-RP
... alleles, probably deriving from specific individual mutations that are characterized by nonpigmentation of the leaves (Bartley, 2005). A similar effect was observed in F2 progenies, resulting from self-fertilization of F1 plants from Pa 121 x SIC 802 and Pa 121 x Pa 169 (Yamada et al., 1982). One fo ...
... alleles, probably deriving from specific individual mutations that are characterized by nonpigmentation of the leaves (Bartley, 2005). A similar effect was observed in F2 progenies, resulting from self-fertilization of F1 plants from Pa 121 x SIC 802 and Pa 121 x Pa 169 (Yamada et al., 1982). One fo ...
Supplementary Tutorial - WashU Epigenome Browser
... represents one item (gene or genomic coordinate) submitted in the gene set, with the name inside of or adjacent to the box. The width of each box represents the relative length of the item. The “Zoom in” operation can be performed on this image by clicking on the image and dragging the cursor over t ...
... represents one item (gene or genomic coordinate) submitted in the gene set, with the name inside of or adjacent to the box. The width of each box represents the relative length of the item. The “Zoom in” operation can be performed on this image by clicking on the image and dragging the cursor over t ...
Isolation and characterization of Viviparous
... related genes (Suzuki et al., 1997). The multiple domains of ABI3 enable it to function either as an activator or a repressor depending on the promoter context (Zhang et al., 2006b). The N-terminal A1 domain is responsible for ABA-dependent co-activation and repression activities (Hoecker et al., 19 ...
... related genes (Suzuki et al., 1997). The multiple domains of ABI3 enable it to function either as an activator or a repressor depending on the promoter context (Zhang et al., 2006b). The N-terminal A1 domain is responsible for ABA-dependent co-activation and repression activities (Hoecker et al., 19 ...
B3 6 mark questions
... * Cells containing the toxin gene produce a chemical that kills insects. Explain the advantages and disadvantages of introducing the toxin gene into crop plants. ...
... * Cells containing the toxin gene produce a chemical that kills insects. Explain the advantages and disadvantages of introducing the toxin gene into crop plants. ...
Chromosomal Clustering of Periodically Expressed Genes
... one missing value at time point j, the approach first finds 10 other oligonucleotides that have a value measured at time point j, with expression most similar to x at all other 45 time points. Then the weighted average of expression values for time point j from these 10 similar oligonucleotides is u ...
... one missing value at time point j, the approach first finds 10 other oligonucleotides that have a value measured at time point j, with expression most similar to x at all other 45 time points. Then the weighted average of expression values for time point j from these 10 similar oligonucleotides is u ...
Yeast whole-genome analysis of conserved regulatory motifs
... • Chromatin states capture chromatin dynamics – Single annotation track for each cell type – One 15-state track per cell type instead of 29 combinations ...
... • Chromatin states capture chromatin dynamics – Single annotation track for each cell type – One 15-state track per cell type instead of 29 combinations ...
Slide 1
... • To test for under-enrichment of “black”, test for over-enrichment of “red”. • The EASE score used by DAVID subtracts one from the observed overlap between gene list and gene set to ensure >1 from the list is in the gene set. • Need to choose “background population” appropriately, e.g., if only por ...
... • To test for under-enrichment of “black”, test for over-enrichment of “red”. • The EASE score used by DAVID subtracts one from the observed overlap between gene list and gene set to ensure >1 from the list is in the gene set. • Need to choose “background population” appropriately, e.g., if only por ...
Sarah Pulliam
... that contains a defective (partly deleted) p53 allele, delineated as the “m” allele. These mice are highly resistant to tumors; however, they also have shortened lifespans and show signs of early aging phenotypes. Some examples of such phenotypes are weight loss, hunched spines, lethargy, osteoporos ...
... that contains a defective (partly deleted) p53 allele, delineated as the “m” allele. These mice are highly resistant to tumors; however, they also have shortened lifespans and show signs of early aging phenotypes. Some examples of such phenotypes are weight loss, hunched spines, lethargy, osteoporos ...
BIOLOGY 181 Lab # 10 Mendelian Genetics in Corn INTRODUCTION
... 1. We will determine the genotype of the parent with the dominant phenotype by looking at the phenotypes of the offspring of particular crosses. By following the next steps, we will learn the rational behind a test cross and the information it can provide. Please write your answers in the ...
... 1. We will determine the genotype of the parent with the dominant phenotype by looking at the phenotypes of the offspring of particular crosses. By following the next steps, we will learn the rational behind a test cross and the information it can provide. Please write your answers in the ...
Comparison of Identified TSS Locations to Other
... available set of ESTs, and may change with the inclusion of additional 5’ capped data. The two main sources of library bias that can affect the determination of the condition-specificity of the TSSs by applying Shannon entropy to the ESTs are library normalization and library size. While we recogniz ...
... available set of ESTs, and may change with the inclusion of additional 5’ capped data. The two main sources of library bias that can affect the determination of the condition-specificity of the TSSs by applying Shannon entropy to the ESTs are library normalization and library size. While we recogniz ...
Guppies – Quang Anh
... gene frequency of the brightest guppies was the highest, at 0.78, and so, it proves that those are the ones seen as the most attractive by the female guppies. And although the predation, natural force, played a role in the simulation, it was overwhelmed by sexual selection and even though the bright ...
... gene frequency of the brightest guppies was the highest, at 0.78, and so, it proves that those are the ones seen as the most attractive by the female guppies. And although the predation, natural force, played a role in the simulation, it was overwhelmed by sexual selection and even though the bright ...
Package `tmod`
... Just like a heatmap corresponds to a single numeric matrix, the pvalue / effect plot corresponds to two matrices: one with the effect size, and another one with the p-values. Each cell in the matrix corresponds to the results of a single statistical test. For example, a number of genes or transcript ...
... Just like a heatmap corresponds to a single numeric matrix, the pvalue / effect plot corresponds to two matrices: one with the effect size, and another one with the p-values. Each cell in the matrix corresponds to the results of a single statistical test. For example, a number of genes or transcript ...
A program for annotating and predicting the effects of single
... upstream of the most distal transcription start site and “downstream” is defined as 5 kb downstream of the most distal polyA addition site, but these default variables can be easily adjusted. SnpEff also found thousands of SNPs within the exons. For example, there are 3,718 SNPs in the 3' untranslat ...
... upstream of the most distal transcription start site and “downstream” is defined as 5 kb downstream of the most distal polyA addition site, but these default variables can be easily adjusted. SnpEff also found thousands of SNPs within the exons. For example, there are 3,718 SNPs in the 3' untranslat ...
Evolution of a pseudo-control region in the mitochondrial genome of
... Sequences of the mitochondrial genome were employed to study the phylogenetic relationships of the Palearctic buzzards (genus Buteo).In a first approach a 2.5 kb PCR fragment comprising the section between ND6 and 12s genes was isolated from Buteo buteo hureo,cloned and sequenced. The gene order cor ...
... Sequences of the mitochondrial genome were employed to study the phylogenetic relationships of the Palearctic buzzards (genus Buteo).In a first approach a 2.5 kb PCR fragment comprising the section between ND6 and 12s genes was isolated from Buteo buteo hureo,cloned and sequenced. The gene order cor ...
chapter 15 - Course Notes
... over of linked genes to develop a method for constructing a genetic map, an ordered list of the genetic loci along a particular chromosome. Sturtevant hypothesized that the frequency of recombinant offspring reflected the distance between genes on a chromosome. He assumed that crossing over is a ...
... over of linked genes to develop a method for constructing a genetic map, an ordered list of the genetic loci along a particular chromosome. Sturtevant hypothesized that the frequency of recombinant offspring reflected the distance between genes on a chromosome. He assumed that crossing over is a ...
The Chromosomal Basis of Inheritance
... over of linked genes to develop a method for constructing a genetic map, an ordered list of the genetic loci along a particular chromosome. Sturtevant hypothesized that the frequency of recombinant offspring reflected the distance between genes on a chromosome. He assumed that crossing over is a ...
... over of linked genes to develop a method for constructing a genetic map, an ordered list of the genetic loci along a particular chromosome. Sturtevant hypothesized that the frequency of recombinant offspring reflected the distance between genes on a chromosome. He assumed that crossing over is a ...
TEV_v7_BY
... present in the C57BL/6J reference mouse genome are drawn from three distinct classes, namely short interspersed nuclear elements (SINEs), long interspersed nuclear elements (LINEs) and members of the endogenous retrovirus (ERV) superfamily. Despite their high prevalence, the relative contribution of ...
... present in the C57BL/6J reference mouse genome are drawn from three distinct classes, namely short interspersed nuclear elements (SINEs), long interspersed nuclear elements (LINEs) and members of the endogenous retrovirus (ERV) superfamily. Despite their high prevalence, the relative contribution of ...
Leukaemia Section t(3;12)(q26;p13) ETV6/MECOM / t(3;12)(q26;p13) ETV6/EVI1 Atlas of Genetics and Cytogenetics
... The ETV6 gene spans a region of less than 250 kb at band 12p13.1 and consists of 8 exons. There are two start codons, one (exon 1a starting at codon 1) located at the beginning of the gene and another alternative (exon 1b starting at codon 43) upstream of exon 3. Protein The ETV6 protein (452 amino ...
... The ETV6 gene spans a region of less than 250 kb at band 12p13.1 and consists of 8 exons. There are two start codons, one (exon 1a starting at codon 1) located at the beginning of the gene and another alternative (exon 1b starting at codon 43) upstream of exon 3. Protein The ETV6 protein (452 amino ...