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Bioinformatics Tools and Genomes to Life
Bioinformatics Tools and Genomes to Life

... -- the multiprotein complexes that execute cellular functions and govern cell form. • Characterize gene regulatory networks. • Characterize the functional repertoire of complex microbial communities in their natural environments at the molecular level. • Develop the computational methods and capabil ...
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... the ribosomal RNA, reflecting the amount of cross- contamination between nucleus and cytoplasmic RNA fractions. These bands completely disappeared in well 2 (kit with modifications) indicating that the RNA purified using this protocol contains low crosscontamination between the RNA populations. B) H ...
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... enterobacteria. • O-island specific DNA encoded genes required for virulence and a large number of phage and phage associated genes. ...
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Biology Ch 10 How Proteins are Made

... From Genes to Proteins • The genes don’t directly make proteins – A combined effort between 3 types of RNA ...
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... soybean genotypes. RNA was extracted from the isolated cells, amplified, and sequenced with Solexa plataform. The generated paired-end sequences (54 bp) were mapped to the soybean genome and gene models (http://www.phytozome.net) for the identification of expressed genes and splicing variants. A tot ...
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... Learning methods for classifying cancer samples using the gene expression profiles, is the limited availability of the samples. So selecting the relevant features is imperative for optimizing the classification algorithms. A feature(gene) selection method using 1D Discrete Wavelet Transforms is prop ...
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... Peste des petits ruminants (PPR) is an important viral disease of sheep and goats, endemic in India. The study was undertaken to characterize the local PPRV by the detection of antigen by IcELISA and sequencing of fusion (F) protein and nucleoprotein (N) gene segments and phylogenetic analysis, so a ...
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... • The problem of identifying (annotating) human genes is considerably harder than the early success story for ßglobin might suggest (see Lesk’s “Introduction to bioinf”). • The human factor VIII gene (whose mutations cause hemophilia A) is spread over ~186,000 bp. It consists of 26 exons ranging in ...
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Prenatal Arsenic Exposure and Altered Gene Expression

... Are any of the genes that are altered in association with arsenic controlled by the epigenetic mechanism DNA methylation? ...
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Gene Expression

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... Dicer-TRBP complex, and then released as miRNA duplexes. miRNA duplexes are incorporated into Argonaute (Ago) family proteins, from which one of the two strands of the duplex is discarded, and finally the effector complex, called RNA-induced silencing complexes (RISCs) is formed. RISCs recognize com ...
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Multidimensional Analysis

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... • Goal: to measure RNA levels of all genes in genome • RNA levels vary with the following: – Cell type – Developmental stage – External stimuli ...
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Serial Analysis of Gene Expression

... •To create a method of comparing gene expression differences between two samples with information about abundance of transcripts •To illustrate effectiveness of this technique by examining pancreatic gene expression patterns •To confirm the quantitative nature of the novel technique through library ...
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... of one strand of _____ DNA ...
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... for encoding the organism in question. Understanding all of the ways in which information is encoded in a genome is still an area of active research - while we have gotten much better at quickly reading the chemical composition (the sequence of nucleotides in a genome and some of the chemical modic ...
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Chapter 11 Vocabulary and Objectives

...  Explain some changes in DNA that can lead to health problems  explain that organisms have systems to fight diseases Lesson 1: How are Molecules of Life Involved in Heredity? I. Objectives:  Describe the structure of nucleotides;  Explain the structure of a DNA molecule;  Explain complementary ...
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Scientific abstract

... Long non-coding RNAs are considered as transcripts that do not code for protein and are longer than 200 nucleotides. LncRNAs are not well studied yet and it is a new emerging field. Once it was discovered that these sequences are well conserved lncRNAs were considered as functional RNAs because cons ...
RNA and Transcription Worksheet File
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... How does each cell function so differently? Not all genes are active in all cell types. Genes make RNA which is translated into proteins, the building blocks required for each cell to function. Different cell types need different proteins to function. Mutations in the DNA sequence can result in no p ...
DNA -> RNA -> Proteins
DNA -> RNA -> Proteins

... mRNA finds a ribosome • mRNA moves out of the nucleus into the cytoplasm of the cell where it finds a ribosome • The ribosome is made of RNA and it will serve as a work bench for making ...
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RNA-Seq



RNA-seq (RNA sequencing), also called whole transcriptome shotgun sequencing (WTSS), is a technology that uses the capabilities of next-generation sequencing to reveal a snapshot of RNA presence and quantity from a genome at a given moment in time.
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