Definition of gene sets - Weizmann Institute of Science
... used to retrieve the 600bp upstream of each gene. Only one-to-one orthologues were used in this analysis. Data processing for Signature Algorithm Expression data were normalized as described in reference (4). The element Egc of the gene expression matrix contains the log-expression change of gene g ...
... used to retrieve the 600bp upstream of each gene. Only one-to-one orthologues were used in this analysis. Data processing for Signature Algorithm Expression data were normalized as described in reference (4). The element Egc of the gene expression matrix contains the log-expression change of gene g ...
OUTLINE OF GENETICS LECTURE #1 A. TERMS PHENOTYPE
... ALLELE: The actual gene encoded by a locus, and which may vary between individuals and mutant/parental strains. For example, I have two mutants that both contain mutations at the argB locus and are unable to grow on media without arginine (they have an identical phenotype). One mutant has a base pai ...
... ALLELE: The actual gene encoded by a locus, and which may vary between individuals and mutant/parental strains. For example, I have two mutants that both contain mutations at the argB locus and are unable to grow on media without arginine (they have an identical phenotype). One mutant has a base pai ...
PDF
... We have determined part of the sequence of the 2.7-kb HindIII fragment from an MLO pathogen of Oenothera. This region contains the 3' region of the rp123 gene, and the entire rpl2 and rpsl9 genes, which were identified by homologies with ribosomal protein gene operons of E. coli [11] and M. capricol ...
... We have determined part of the sequence of the 2.7-kb HindIII fragment from an MLO pathogen of Oenothera. This region contains the 3' region of the rp123 gene, and the entire rpl2 and rpsl9 genes, which were identified by homologies with ribosomal protein gene operons of E. coli [11] and M. capricol ...
Bacterial cultivation - Furry Helpers Pet Sitting
... • Exoenzymes :enzymes that are produced by the cell and secreted outside to act on the substrate external to the cell. The broken down molecules can then be transported easily into the cell and used as nutrients by the cell. • Amylase :an exoenzyme that breaks down starch. • Reaction catalyzed by am ...
... • Exoenzymes :enzymes that are produced by the cell and secreted outside to act on the substrate external to the cell. The broken down molecules can then be transported easily into the cell and used as nutrients by the cell. • Amylase :an exoenzyme that breaks down starch. • Reaction catalyzed by am ...
Lecture_4_Glycolysis
... Obligate anaerobes cannot survive in the presence of O2. There are many more fermentations than just alcoholic and lactic acid fermentation. ...
... Obligate anaerobes cannot survive in the presence of O2. There are many more fermentations than just alcoholic and lactic acid fermentation. ...
LACTOSE INTOLERANCE – CURRENT STATE OF
... Small intestine biopsy is the only diagnostic procedure allowing for the direct measurement of lactase activity. However, due to invasive nature it is hardly accepted by patients unless they have to undergo gastrointestinal endoscopy for other reasons. Therefore, lactase persistence/nonpersistence s ...
... Small intestine biopsy is the only diagnostic procedure allowing for the direct measurement of lactase activity. However, due to invasive nature it is hardly accepted by patients unless they have to undergo gastrointestinal endoscopy for other reasons. Therefore, lactase persistence/nonpersistence s ...
Selection for TnlO Tet Repressor Binding to tet Operator
... We have constructed a genetic assay which selects positively for a functional interaction between Tet repressor and its cognate operator in Escherichia coli. In this strain Tet repressor blocks expression of lacl and lacZ. This leads to derepression of a lacPO controlled galK gene. The strain can be ...
... We have constructed a genetic assay which selects positively for a functional interaction between Tet repressor and its cognate operator in Escherichia coli. In this strain Tet repressor blocks expression of lacl and lacZ. This leads to derepression of a lacPO controlled galK gene. The strain can be ...
Ontology Alignment
... – Synthesis of gene products (RNA and proteins) – Two steps: transcription and translation – Transcription: Gene RNA (mediated by transcription factor proteins (TF) that regulate (up / down) the synthesis of RNA by a polymerase enzyme) – Translation: RNA protein ...
... – Synthesis of gene products (RNA and proteins) – Two steps: transcription and translation – Transcription: Gene RNA (mediated by transcription factor proteins (TF) that regulate (up / down) the synthesis of RNA by a polymerase enzyme) – Translation: RNA protein ...
Prokaryotic Genomics
... determines a gene’s function, then all other genes with similar protein sequences perform the same function. – Annotation also uses information about the gene’s chromosomal neighborhood: genes that are part of the same subsystem are often found grouped together. – We are not likely to be able to pre ...
... determines a gene’s function, then all other genes with similar protein sequences perform the same function. – Annotation also uses information about the gene’s chromosomal neighborhood: genes that are part of the same subsystem are often found grouped together. – We are not likely to be able to pre ...
Data Mining in Ensembl with BioMart
... • Choose the species of interest (Dataset) • Decide what you would like to know about the genes (Attributes) (sequences, IDs, description…) • Decide on a smaller geneset using Filters. (enter IDs, choose a region …) ...
... • Choose the species of interest (Dataset) • Decide what you would like to know about the genes (Attributes) (sequences, IDs, description…) • Decide on a smaller geneset using Filters. (enter IDs, choose a region …) ...
Towards evolving a better repressor
... were crossed, the double transgenic mouse contained a regulated operon. Although many proteins and enzymes can function outside of their natural sources, their functionality is generally not optimized for use in industrial or non-native applications. The lac repressor, although widely used, is an ex ...
... were crossed, the double transgenic mouse contained a regulated operon. Although many proteins and enzymes can function outside of their natural sources, their functionality is generally not optimized for use in industrial or non-native applications. The lac repressor, although widely used, is an ex ...
Microbiology
... segment (34960 bp) contains, as well as 12 genes already identified as part of the pur operon, 17 putative ORFs and one partial one. Two of them (gabP and guaA) are known B. subtilis genes. The gene product of cotA (formerly pig) shows significant similarity to oxidoreductases (phenoxazine synthase ...
... segment (34960 bp) contains, as well as 12 genes already identified as part of the pur operon, 17 putative ORFs and one partial one. Two of them (gabP and guaA) are known B. subtilis genes. The gene product of cotA (formerly pig) shows significant similarity to oxidoreductases (phenoxazine synthase ...
C H E M I S T R Y
... Prokaryotes cluster genes into operons that are transcribed together to give a single mRNA molecule. ...
... Prokaryotes cluster genes into operons that are transcribed together to give a single mRNA molecule. ...
Macromolecule PowerPoint
... Main energy transport molecule & source for metabolism All digested carbohydrates broken down to this for absorption in the small intestine. Only fuel used by the brain/nervous tissue ...
... Main energy transport molecule & source for metabolism All digested carbohydrates broken down to this for absorption in the small intestine. Only fuel used by the brain/nervous tissue ...
Chapter 5 Active Lecture Questions
... Apoenzymes are inactive by themselves and must be activated by ...
... Apoenzymes are inactive by themselves and must be activated by ...
Gene Clustering - Bioinformatics at School of Informatics, Indiana
... On each group ( each breakpoint with the next 5th,.. Breakpoint ) the four highest score have been chosen as blocks for dynamic programming. This dynamic programming get the block as potential clusters, the start and stop position and the weight of that block (“Break point interval score”). and fina ...
... On each group ( each breakpoint with the next 5th,.. Breakpoint ) the four highest score have been chosen as blocks for dynamic programming. This dynamic programming get the block as potential clusters, the start and stop position and the weight of that block (“Break point interval score”). and fina ...
Document
... – broad biological goals, such as mitosis or purine metabolism, that are accomplished by ordered assemblies of molecular functions ...
... – broad biological goals, such as mitosis or purine metabolism, that are accomplished by ordered assemblies of molecular functions ...
Biochemistry 1 (BASIC-106)
... • α and β differ only in configuration of OH of the anomeric carbon compared to C #6 • Though almost exactly the same, they operate differently in our bodies. For example: Humans have the α-amylase enzyme for the digestion of starch, but not the β-amylase enzyme for the digestion of cellulose. ∴ We ...
... • α and β differ only in configuration of OH of the anomeric carbon compared to C #6 • Though almost exactly the same, they operate differently in our bodies. For example: Humans have the α-amylase enzyme for the digestion of starch, but not the β-amylase enzyme for the digestion of cellulose. ∴ We ...
5 What is a common suffix for [specific] carbohydrates?
... differ and how can this affect digestion? • Alpha differs from the beta glycosidic bond only in the angle of formation between the two sugars • Alpha-glycosidic linkage is below the plane of the rings and the beta glycosidic linkages are above • Humans lack enzymes needed to cleave betaglycosidic li ...
... differ and how can this affect digestion? • Alpha differs from the beta glycosidic bond only in the angle of formation between the two sugars • Alpha-glycosidic linkage is below the plane of the rings and the beta glycosidic linkages are above • Humans lack enzymes needed to cleave betaglycosidic li ...
GLOBE® 55 HM Corn Syrup/Glucose Solids 019530
... 100% total extract Very low mineral content No mineral hazing Faster product filtration Better color control Improves control of protein interaction ...
... 100% total extract Very low mineral content No mineral hazing Faster product filtration Better color control Improves control of protein interaction ...
Motif Mining from Gene Regulatory Networks
... with distinct sets of nodes is at least U = 4. – The number of appearances in the real network is significantly larger than in the randomized networks: Nreal – Nrand > 0.1Nrand (Why??). ...
... with distinct sets of nodes is at least U = 4. – The number of appearances in the real network is significantly larger than in the randomized networks: Nreal – Nrand > 0.1Nrand (Why??). ...
Lac operon
lac operon (lactose operon) is an operon required for the transport and metabolism of lactose in Escherichia coli and many other enteric bacteria. Although glucose is the preferred carbon source for most bacteria, the lac operon allows for the effective digestion of lactose when glucose is not available. Gene regulation of the lac operon was the first genetic regulatory mechanism to be understood clearly, so it has become a foremost example of prokaryotic gene regulation. It is often discussed in introductory molecular and cellular biology classes at universities for this reason.Bacterial operons are polycistronic transcripts that are able to produce multiple proteins from one mRNA transcript. In this case, when lactose is required as a sugar source for the bacterium, the three genes of the lac operon can be expressed and their subsequent proteins translated: lacZ, lacY, and lacA. The gene product of lacZ is β-galactosidase which cleaves lactose, a disaccharide, into glucose and galactose. LacY encodes lactose permease, a protein which becomes embedded in the cytoplasmic membrane to enable transport of lactose into the cell. Finally, lacA encodes galactoside O-acetyltransferase. Layout of the lac operon.It would be wasteful to produce the enzymes when there is no lactose available or if there is a more preferable energy source available, such as glucose. The lac operon uses a two-part control mechanism to ensure that the cell expends energy producing the enzymes encoded by the lac operon only when necessary. In the absence of lactose, the lac repressor halts production of the enzymes encoded by the lac operon. In the presence of glucose, the catabolite activator protein (CAP), required for production of the enzymes, remains inactive, and EIIAGlc shuts down lactose permease to prevent transport of lactose into the cell. This dual control mechanism causes the sequential utilization of glucose and lactose in two distinct growth phases, known as diauxie.