Model Repair for Markov Decision Processes
... The probabilities in MDP models are often not precise, and are determined by characteristics of network connections, or refined later in the design stage. Over the past years, the parametric model checking problem has been formulated and studied for Markov chains with probabilities as parameters [3], ...
... The probabilities in MDP models are often not precise, and are determined by characteristics of network connections, or refined later in the design stage. Over the past years, the parametric model checking problem has been formulated and studied for Markov chains with probabilities as parameters [3], ...
Hidden Markov Models
... HMM Coupled HMM Hierarchical HMM Input-output HMM Switching state systems Hybrid HMM (HMM +NN) Special case of graphical models ...
... HMM Coupled HMM Hierarchical HMM Input-output HMM Switching state systems Hybrid HMM (HMM +NN) Special case of graphical models ...
Hidden Markov Models
... HMM Coupled HMM Hierarchical HMM Input-output HMM Switching state systems Hybrid HMM (HMM +NN) Special case of graphical models ...
... HMM Coupled HMM Hierarchical HMM Input-output HMM Switching state systems Hybrid HMM (HMM +NN) Special case of graphical models ...
Sp. A Sp. B Sp. C Crown group Stem group
... of B. By the time that B arose (but possibly not before that time), all characteristics shared by modern angiosperms would have been in place. The above considerations are critical for understanding the arguments below about the four tree scenarios, Tree a through Tree d. Tree "a" = Upland hypothesi ...
... of B. By the time that B arose (but possibly not before that time), all characteristics shared by modern angiosperms would have been in place. The above considerations are critical for understanding the arguments below about the four tree scenarios, Tree a through Tree d. Tree "a" = Upland hypothesi ...
DNA Mismatch Repair and Synonymous Codon Evolution in
... FIG. I.-Relationship between the relative mutation rate equilibrium G+C content, as predicted by the simplified model [ 81). In each graph the curves from left to right are MS = 0.9,0.7, 0.5, corresponding to sequences, under no repair, of lo%, 30%, 50% G+C, respectively. ...
... FIG. I.-Relationship between the relative mutation rate equilibrium G+C content, as predicted by the simplified model [ 81). In each graph the curves from left to right are MS = 0.9,0.7, 0.5, corresponding to sequences, under no repair, of lo%, 30%, 50% G+C, respectively. ...
1 BAYESIAN STATISTICS 8 Proceedings of the Eighth Valencia
... in DNA forensic analysis. Merl and Prado introduce, develop and apply structured Bayesian models of DNA sequence data in challenging problems of detecting natural selection, while Xing and Sohn develop hidden Markov Dirichlet process models in studies that aim to jointly model recombination and coal ...
... in DNA forensic analysis. Merl and Prado introduce, develop and apply structured Bayesian models of DNA sequence data in challenging problems of detecting natural selection, while Xing and Sohn develop hidden Markov Dirichlet process models in studies that aim to jointly model recombination and coal ...
Contig annotation tool CAT robustly classifies assembled
... For the first ORF, the top DIAMOND hit is present in Escherichia coli and the hit had a bitscore of 239. The same homology search yielded two other hits with bitscores ≥90% of that value: Vibrio cholerae (bitscore: 224) and Klebsiella pneumoniae (bitscore: 218). The bitscore of the fourth hit in Bac ...
... For the first ORF, the top DIAMOND hit is present in Escherichia coli and the hit had a bitscore of 239. The same homology search yielded two other hits with bitscores ≥90% of that value: Vibrio cholerae (bitscore: 224) and Klebsiella pneumoniae (bitscore: 218). The bitscore of the fourth hit in Bac ...
Lampetra fluviatilis Neurotrophin Homolog, Descendant of a
... For the tree constructions (all three consensus trees), the maximum parsimony method was used, which is a character-state method that treats each site as an independent character. Sequences were imported to PAUP v. 3.1.1 (Swofford, 1993) for an unbiased parsimonious analysis. The neurotrophin and Tr ...
... For the tree constructions (all three consensus trees), the maximum parsimony method was used, which is a character-state method that treats each site as an independent character. Sequences were imported to PAUP v. 3.1.1 (Swofford, 1993) for an unbiased parsimonious analysis. The neurotrophin and Tr ...
Evolutionary history of the genus Capra
... with the Y-chromosome phylogeny. The mtDNA data also revealed two well-deWned clades. However, the species in each clade are diVerent from those inferred from the Y-chromosome data. To explain the discordance between Y-chromosome and mtDNA phylogenies, several hypotheses are considered. We suggest t ...
... with the Y-chromosome phylogeny. The mtDNA data also revealed two well-deWned clades. However, the species in each clade are diVerent from those inferred from the Y-chromosome data. To explain the discordance between Y-chromosome and mtDNA phylogenies, several hypotheses are considered. We suggest t ...
Heuris`c)search:)FastA)and)BLAST)
... (have)some)degree)of)similarity))) – Compute)local)alignment)using)dynamic)programming)in) these)regions)) • Assump'on:)a)good)alignment)probably)has)some)exact) ...
... (have)some)degree)of)similarity))) – Compute)local)alignment)using)dynamic)programming)in) these)regions)) • Assump'on:)a)good)alignment)probably)has)some)exact) ...
Mugisha, L., Leendertz, FH, Opuda-Asibo, J., Olobo, JO, Ehlers, B. A
... The members of the family Herpesviridae have been previously grouped into three subfamilies, designated Alphaherpesvirinae, Betaherpesvirinae and Gammaherpesvirinae [28], and phylogenetic lineages in these subfamilies were identified [22–25]. In studies amplifying unknown herpes virus sequences from ...
... The members of the family Herpesviridae have been previously grouped into three subfamilies, designated Alphaherpesvirinae, Betaherpesvirinae and Gammaherpesvirinae [28], and phylogenetic lineages in these subfamilies were identified [22–25]. In studies amplifying unknown herpes virus sequences from ...
Ray-tracing Method for Estimating Radio Propagation Using Genetic
... *4 Ray-launching method: A method where rays are emitted from the source point at fixedinterval angles, and the propagation path is traced for each ray. ...
... *4 Ray-launching method: A method where rays are emitted from the source point at fixedinterval angles, and the propagation path is traced for each ray. ...
Time-series Bitmaps - University of California, Riverside
... if, for example, we take the first 16,000 symbols of the mitochondrial DNA sequences of four familiar species and use them to create their own file icons. Figure 6 below illustrates this. Even if we did not know these particular animals, we would have no problem recognizing that there are two pair o ...
... if, for example, we take the first 16,000 symbols of the mitochondrial DNA sequences of four familiar species and use them to create their own file icons. Figure 6 below illustrates this. Even if we did not know these particular animals, we would have no problem recognizing that there are two pair o ...
Star Method for MSA and Its Parallelization
... solution for pairwise similarity score matrix computation by mapping pairwise matrix H for one GPU block, where each thread in the block is mapped to one cell in Figure 4. Meanwhile, one anti-diagonal of sequence pair matrix is mapped into GPU grid. However, we must take into account that grid size ...
... solution for pairwise similarity score matrix computation by mapping pairwise matrix H for one GPU block, where each thread in the block is mapped to one cell in Figure 4. Meanwhile, one anti-diagonal of sequence pair matrix is mapped into GPU grid. However, we must take into account that grid size ...
Recent developments in genetic data analysis: what can
... occurred down the ancestral lineages since the most recent common ancestor. In a model, this genetic history could be generated, for example, by a coalescent simulation (Hudson, 1991). The genetic history, and therefore the data set, depends both on past demography – changes in reproductive patterns ...
... occurred down the ancestral lineages since the most recent common ancestor. In a model, this genetic history could be generated, for example, by a coalescent simulation (Hudson, 1991). The genetic history, and therefore the data set, depends both on past demography – changes in reproductive patterns ...
The hybrid origins of three perennial Medicago species
... animal kingdom. Species formed by hybridization often have different phenotype and better fitness than either the parents (Otto 2007). However, in other cases, depending on the relatedness of the parents, the descendants may also be sterile. This is caused by chromosomal ...
... animal kingdom. Species formed by hybridization often have different phenotype and better fitness than either the parents (Otto 2007). However, in other cases, depending on the relatedness of the parents, the descendants may also be sterile. This is caused by chromosomal ...
Convergence of Newton-like methods for solving systems of
... The analysis of Newton-like methods given in this paper is essentially based on the Newton-Kantorovich Theorem (Kantorovich [51) and its extension given by Ortega and Rheinboldt [6]. In our approach the dependence of the a s y m p t o t i c order of convergence on the error in M k as an approximatio ...
... The analysis of Newton-like methods given in this paper is essentially based on the Newton-Kantorovich Theorem (Kantorovich [51) and its extension given by Ortega and Rheinboldt [6]. In our approach the dependence of the a s y m p t o t i c order of convergence on the error in M k as an approximatio ...