Conservation ofParaHoxgenes` function in patterning of the
... between 36-48 hpf, presumably by contraction of the larval retractor (shell) muscle. This results in a 90° displacement of the mantle cavity to the right side, and, when viewed from the front, the foot and velum are rotated anti-clockwise in relation to the protoconch. The remaining part of torsion ...
... between 36-48 hpf, presumably by contraction of the larval retractor (shell) muscle. This results in a 90° displacement of the mantle cavity to the right side, and, when viewed from the front, the foot and velum are rotated anti-clockwise in relation to the protoconch. The remaining part of torsion ...
nar-02451-data-e-201
... methylated human genes and diseases from any free text without restriction to specific diseases. DEMGD consists of four components. The first is the text pre-processing component in which DEMGD splits free text into sentences, extracts genes, diseases and methylation words using dictionaries. The se ...
... methylated human genes and diseases from any free text without restriction to specific diseases. DEMGD consists of four components. The first is the text pre-processing component in which DEMGD splits free text into sentences, extracts genes, diseases and methylation words using dictionaries. The se ...
Principal Components Analysis
... ordered according to their correlation to the principal component. Example: in our PCA analysis above, PCA 2 seemed to correspond to the most relevant expression profile for the Yeast Cell Cycle analysis. Let’s select the gene list “PCA component 2” from the folder PCA Yeast cell cycle time series” ...
... ordered according to their correlation to the principal component. Example: in our PCA analysis above, PCA 2 seemed to correspond to the most relevant expression profile for the Yeast Cell Cycle analysis. Let’s select the gene list “PCA component 2” from the folder PCA Yeast cell cycle time series” ...
Comparison of Identified TSS Locations to Other
... independent libraries were used to generate the collections of ESTs for each of the eight conditions. It is highly unlikely that the exact same normalization bias would be present in all of the independent libraries. The second source of bias that may affect TSS condition-specificity arises from usi ...
... independent libraries were used to generate the collections of ESTs for each of the eight conditions. It is highly unlikely that the exact same normalization bias would be present in all of the independent libraries. The second source of bias that may affect TSS condition-specificity arises from usi ...
Prof. Kamakaka`s Lecture 16 Notes
... bound by I+ and 50% by Is If this were the case then you should see half the operons being induced and galactosidase being made (50%) This does not occur ...
... bound by I+ and 50% by Is If this were the case then you should see half the operons being induced and galactosidase being made (50%) This does not occur ...
Vorms final version + images
... The early history of classical genetics provides us with a fascinating case of interdisciplinary research. The laying and consolidation of its essential components, in the 1910’s and 1920’s, resulted to a large extent from the integration of two modes of analysis, corresponding to two different disc ...
... The early history of classical genetics provides us with a fascinating case of interdisciplinary research. The laying and consolidation of its essential components, in the 1910’s and 1920’s, resulted to a large extent from the integration of two modes of analysis, corresponding to two different disc ...
Chromatin Signature Identifies Monoallelic Gene Expression Across
... (Table S1) and, more importantly, that we trained the classifier on the quantile rank instead of the base 2 logarithm of normalized genebody signal. As expected with an alternating decision tree classifier, genes predicted as MAE in GM12878 showed only minor changes compared to our previous study, con ...
... (Table S1) and, more importantly, that we trained the classifier on the quantile rank instead of the base 2 logarithm of normalized genebody signal. As expected with an alternating decision tree classifier, genes predicted as MAE in GM12878 showed only minor changes compared to our previous study, con ...
The Incompatible Desiderata of Gene Cluster Properties
... spatial patterns suggestive of common ancestry, and then design a search algorithm to find such patterns. The exact definition of the structures of interest is critical for sensitive detection of ancient homologies without inclusion of false positives. It is difficult to characterize what such regio ...
... spatial patterns suggestive of common ancestry, and then design a search algorithm to find such patterns. The exact definition of the structures of interest is critical for sensitive detection of ancient homologies without inclusion of false positives. It is difficult to characterize what such regio ...
Dissecting Gene Expression Changes Accompanying a Ploidy
... cellular processes in cancer versus actually promoting cellular transformation is unclear (GORDON et al. 2012). The mechanism linking aneuploidy to phenotype is believed to operate primarily through changes in gene expression. By altering the copy number of a subset of genes, relative to the rest o ...
... cellular processes in cancer versus actually promoting cellular transformation is unclear (GORDON et al. 2012). The mechanism linking aneuploidy to phenotype is believed to operate primarily through changes in gene expression. By altering the copy number of a subset of genes, relative to the rest o ...
A Customized Gene Expression Microarray
... the Brittle Stalk2 (bk2) gene of maize and the Brittle Culm1 (bc1) gene of rice encode glycosyl phosphatidylinositol-anchored Cobra-like proteins (Li et al., 2003; Ching et al., 2006; Brady et al., 2007; Sindhu et al., 2007). Although the precise biological function of Cobra-like proteins has not be ...
... the Brittle Stalk2 (bk2) gene of maize and the Brittle Culm1 (bc1) gene of rice encode glycosyl phosphatidylinositol-anchored Cobra-like proteins (Li et al., 2003; Ching et al., 2006; Brady et al., 2007; Sindhu et al., 2007). Although the precise biological function of Cobra-like proteins has not be ...
Identification of Genes Mediating Drosophila Follicle Cell Progenitor
... Candidate gene mutations were combined with one or more GAL4 lines, R10H05-Gal4, c768-Gal4, or 179y-Gal4. R10H05 drives GFP expression beginning in FSCs, while c768 and 179y only initiate GFP expression after the M–E transition. All three Gal4 lines showed indistinguishable GFP variegation patterns ...
... Candidate gene mutations were combined with one or more GAL4 lines, R10H05-Gal4, c768-Gal4, or 179y-Gal4. R10H05 drives GFP expression beginning in FSCs, while c768 and 179y only initiate GFP expression after the M–E transition. All three Gal4 lines showed indistinguishable GFP variegation patterns ...
Design a Kid
... Determine dimples: Present (D-D or D-d) Absent (d-d) Determine nose: Large (N-N) Medium (N-n) Small (n-n) Determine ear size: Large (S-S) Medium (S-s) Small (s-s) Determine earlobe type: Earlobes free (G-G or G-g) Earlobes attached (g-g) Determine freckles on cheeks: Present (F-F or F-f) Absent (f-f ...
... Determine dimples: Present (D-D or D-d) Absent (d-d) Determine nose: Large (N-N) Medium (N-n) Small (n-n) Determine ear size: Large (S-S) Medium (S-s) Small (s-s) Determine earlobe type: Earlobes free (G-G or G-g) Earlobes attached (g-g) Determine freckles on cheeks: Present (F-F or F-f) Absent (f-f ...
Patterns of Segmental Duplication in the Human Genome
... except for pericentromeric and subtelomeric regions (see the definition used in Bailey et al. [2001]). For each region, we calculated the duplication-enrichment index, which is defined as the ratio of the observed percentage of duplications in the region to the percentage of duplications in the enti ...
... except for pericentromeric and subtelomeric regions (see the definition used in Bailey et al. [2001]). For each region, we calculated the duplication-enrichment index, which is defined as the ratio of the observed percentage of duplications in the region to the percentage of duplications in the enti ...
Genome Biology and Evolution
... Acaciella angustissima), Spondias sp., and Jatropha curcas (Rincón-Rosales and Gutiérrez-Miceli 2008; Suazo-Ortuño et al. 2013) where it sucks the plant sap. As the insect grows, it keeps moving on the plant until it becomes an adult and reaches the principal trunk. Three-year-old plants can have ...
... Acaciella angustissima), Spondias sp., and Jatropha curcas (Rincón-Rosales and Gutiérrez-Miceli 2008; Suazo-Ortuño et al. 2013) where it sucks the plant sap. As the insect grows, it keeps moving on the plant until it becomes an adult and reaches the principal trunk. Three-year-old plants can have ...
The evolution of developmental gene networks
... with the mandibules of some carnivorous beetles (Konuma & Chiba 2007). However, it is clear that, on the whole, the basic insect segmental unit has been conserved. In contrast, insect oocytes and early eggs exhibit significant morphological differences, a consequence of the numerous and diverse life ...
... with the mandibules of some carnivorous beetles (Konuma & Chiba 2007). However, it is clear that, on the whole, the basic insect segmental unit has been conserved. In contrast, insect oocytes and early eggs exhibit significant morphological differences, a consequence of the numerous and diverse life ...
Genome-Wide Gene Expression Effects of Sex Chromosome
... Aut; Aut strain, crosses between this genotype and the parental Autw132 strain were used to generate the experimental genotypes (Figure 1). We chose this approach rather than screening progeny for exceptional karyotypes resulting from nondisjunction, because it allowed careful control of the larval ...
... Aut; Aut strain, crosses between this genotype and the parental Autw132 strain were used to generate the experimental genotypes (Figure 1). We chose this approach rather than screening progeny for exceptional karyotypes resulting from nondisjunction, because it allowed careful control of the larval ...
GIN Transposons: Genetic Elements Linking Retrotransposons and
... built including them and also sequences from Mdg1 retrotransposons, which were to be used as outgroups. The results are shown in figure 1, and the aligned sequences can be found in supplementary file 2 (Supplementary Material online). The detailed analysis of these new sequences totally changes our ...
... built including them and also sequences from Mdg1 retrotransposons, which were to be used as outgroups. The results are shown in figure 1, and the aligned sequences can be found in supplementary file 2 (Supplementary Material online). The detailed analysis of these new sequences totally changes our ...
Identification of Full and Partial Class Relevant Genes
... serve to distinguish subsets of cancer types. Further, for simultaneous identification of both FCR and PCR genes in multiclass microarray cancer data, we propose a Markov blanket [16]–[19] embedded multiobjective memetic algorithm (MBE-MOMA). In particular, MBE-MOMA searches on multiple objectives s ...
... serve to distinguish subsets of cancer types. Further, for simultaneous identification of both FCR and PCR genes in multiclass microarray cancer data, we propose a Markov blanket [16]–[19] embedded multiobjective memetic algorithm (MBE-MOMA). In particular, MBE-MOMA searches on multiple objectives s ...
Analysis of the histone H3 gene family in Arabidopsis and
... (Chaubet et al., 1992; Robertson et al., 1996; Waterborg, 1992); however, the expression patterns of these variants have not been elucidated and the precise number of histone variants that exist remains unclear, even in the model plant Arabidopsis. This is probably because many of the histone varian ...
... (Chaubet et al., 1992; Robertson et al., 1996; Waterborg, 1992); however, the expression patterns of these variants have not been elucidated and the precise number of histone variants that exist remains unclear, even in the model plant Arabidopsis. This is probably because many of the histone varian ...
Phenotypic overlap in the contribution of individual genes to CNV
... computational use of these data has been the disparate and nonstandardized way of describing human phenotypic data, which has traditionally relied on free text or terminologies designed for medical management, billing and epidemiology (Schofield et al., 2010). The advent of the Human Phenotype Ontol ...
... computational use of these data has been the disparate and nonstandardized way of describing human phenotypic data, which has traditionally relied on free text or terminologies designed for medical management, billing and epidemiology (Schofield et al., 2010). The advent of the Human Phenotype Ontol ...
Four types of controls were performed to support these
... mutator phenotype (mutS, mutL, mutH, uvrD, mutT and mutY) were amplified ...
... mutator phenotype (mutS, mutL, mutH, uvrD, mutT and mutY) were amplified ...
Identification of Genes Needed for Regeneration, Stem Cell
... using RNAi by feeding. Given the fact that the S. mediterranea genome sequence is currently incomplete, it is unknown what percentage of the total number of S. mediterranea genes these 1065 represent. The screen protocol consisted of three feedings, two rounds of regeneration following amputation of ...
... using RNAi by feeding. Given the fact that the S. mediterranea genome sequence is currently incomplete, it is unknown what percentage of the total number of S. mediterranea genes these 1065 represent. The screen protocol consisted of three feedings, two rounds of regeneration following amputation of ...
Mol Biol Evol-2015-Lipinska-15
... females are capable of parthenogenesis. Partheno-sporophytes are morphologically and functionally indistinguishable from diploid sporophytes. Life cycle stages used for transcriptomic analysis are marked with an asterisk. ...
... females are capable of parthenogenesis. Partheno-sporophytes are morphologically and functionally indistinguishable from diploid sporophytes. Life cycle stages used for transcriptomic analysis are marked with an asterisk. ...
Abundance and distribution of Macrolide
... gel electrophoresis. The minimum quantification limits for all genes were in the range of 1.0 102 to 2.1 103 copies per mL DNA. The absolute abundances of MLS resistance genes and mobile elements (gene copies per sample volume) were shown in Table A6. To minimize variances caused by different ba ...
... gel electrophoresis. The minimum quantification limits for all genes were in the range of 1.0 102 to 2.1 103 copies per mL DNA. The absolute abundances of MLS resistance genes and mobile elements (gene copies per sample volume) were shown in Table A6. To minimize variances caused by different ba ...
Essential gene
Essential genes are those genes of an organism that are thought to be critical for its survival. However, being essential is highly dependent on the circumstances in which an organism lives. For instance, a gene required to digest starch is only essential if starch is the only source of energy. Recently, systematic attempts have been made to identify those genes that are absolutely required to maintain life, provided that all nutrients are available. Such experiments have led to the conclusion that the absolutely required number of genes for bacteria is on the order of about 250-300. These essential genes encode proteins to maintain a central metabolism, replicate DNA, translate genes into proteins, maintain a basic cellular structure, and mediate transport processes into and out of the cell. Most genes are not essential but convey selective advantages and increased fitness.