MBG 304 Molecular Genetics of Eukaryotes (3+0)3
... Genetic engineering and biotechnology, Medical and forensic applications of gene manipulation, Transgenic plants and animals. MBG 405 Current Techniques in Molecular Biology (0+6)3 Intoduction to recent molecular biology techniques and advances. MBG 406 Genomics and Proteomics (3+0)3 Transition from ...
... Genetic engineering and biotechnology, Medical and forensic applications of gene manipulation, Transgenic plants and animals. MBG 405 Current Techniques in Molecular Biology (0+6)3 Intoduction to recent molecular biology techniques and advances. MBG 406 Genomics and Proteomics (3+0)3 Transition from ...
Bio 101 Biology I
... Genetic engineering and biotechnology, Medical and forensic applications of gene manipulation, Transgenic plants and animals. MBG 405 Current Techniques in Molecular Biology (0+6)3 Intoduction to recent molecular biology techniques and advances. MBG 406 Genomics and Proteomics (3+0)3 Transition from ...
... Genetic engineering and biotechnology, Medical and forensic applications of gene manipulation, Transgenic plants and animals. MBG 405 Current Techniques in Molecular Biology (0+6)3 Intoduction to recent molecular biology techniques and advances. MBG 406 Genomics and Proteomics (3+0)3 Transition from ...
Physical Mapping of a 670-kb Region of Chromosomes XVI and XVII
... To test whether the YAC clones harboring genes h49 and jl8 are mitotically stable in long term cultures, they were grown for 75 generations and examined by Southern blot analysis. No rearrangements were observed suggesting the YAC clones are propagated faithfully during mitosis. This observation was ...
... To test whether the YAC clones harboring genes h49 and jl8 are mitotically stable in long term cultures, they were grown for 75 generations and examined by Southern blot analysis. No rearrangements were observed suggesting the YAC clones are propagated faithfully during mitosis. This observation was ...
Supplemental Methods Document Experimental design Soil s
... assigned to main plots were referred to as no-till or conventional tillage (under mouldboard plough). Rotations have included pastures and grain crops during the last 16 years. Last rotation before sampling was corn-soybean. Bulk soil samples were collected on August 2010 from all treatments and rep ...
... assigned to main plots were referred to as no-till or conventional tillage (under mouldboard plough). Rotations have included pastures and grain crops during the last 16 years. Last rotation before sampling was corn-soybean. Bulk soil samples were collected on August 2010 from all treatments and rep ...
BMC Genomics 10
... characteristics to causative genes in future QTL studies. Especially for insufficiently described regions, the comparative mapping provides the possibility of identifying central genes through programmes like GeneDistiller [14]. Previously, SNPs have been used for mapping only selected parts of the ...
... characteristics to causative genes in future QTL studies. Especially for insufficiently described regions, the comparative mapping provides the possibility of identifying central genes through programmes like GeneDistiller [14]. Previously, SNPs have been used for mapping only selected parts of the ...
Genome Evolution Due to Allopolyploidization in Wheat
... ABSTRACT The wheat group has evolved through allopolyploidization, namely, through hybridization among species from the plant genera Aegilops and Triticum followed by genome doubling. This speciation process has been associated with ecogeographical expansion and with domestication. In the past few d ...
... ABSTRACT The wheat group has evolved through allopolyploidization, namely, through hybridization among species from the plant genera Aegilops and Triticum followed by genome doubling. This speciation process has been associated with ecogeographical expansion and with domestication. In the past few d ...
Patterns of Segmental Duplication in the Human Genome
... ends of the alignment, while maintaining the requirement 90% sequence similarity during the extension process. Noting that some regions showed a higher density of duplication than others, we examined these regions for possible causes of duplication. Specifically, we divided each chromosome into no ...
... ends of the alignment, while maintaining the requirement 90% sequence similarity during the extension process. Noting that some regions showed a higher density of duplication than others, we examined these regions for possible causes of duplication. Specifically, we divided each chromosome into no ...
The linear chromosome of the plant
... [6], while most other mycoplasmas have only one. Also, in contrast to most other mycoplasmas, phytoplasmas have resisted all attempts of cultivation in cell-free media, indicating that they have a different metabolism than other mycoplasmas and/or a greater reliance on their hosts. As a consequence, ...
... [6], while most other mycoplasmas have only one. Also, in contrast to most other mycoplasmas, phytoplasmas have resisted all attempts of cultivation in cell-free media, indicating that they have a different metabolism than other mycoplasmas and/or a greater reliance on their hosts. As a consequence, ...
Supplementary Figures (doc 9746K)
... The percentages of categories of mapped regions shift from 1 lane to 4 lanes based on the Ensembl gene annotation (Homo_sapiens.GRCh37.65). At 1 lane, on average, 47% of the mapped area lies in exons, 39% is in the introns, and 14% is located in intergenic regions. However, at 4 lanes, which contain ...
... The percentages of categories of mapped regions shift from 1 lane to 4 lanes based on the Ensembl gene annotation (Homo_sapiens.GRCh37.65). At 1 lane, on average, 47% of the mapped area lies in exons, 39% is in the introns, and 14% is located in intergenic regions. However, at 4 lanes, which contain ...
Package `LDheatmap`
... alleles at each SNP same as dbSNPalleles chromosome (chr7 for all) physical position strand (all "+") ...
... alleles at each SNP same as dbSNPalleles chromosome (chr7 for all) physical position strand (all "+") ...
Mutator Transposon in Maize and MULEs in the Plant Genome
... transposase, which was used as evidence for its very early origin [13]. The mudrB major transcript encodes a 23 kDa protein (MURB) that is not similar to any sequences in public database outside maize and its close relatives. Although the precise function of MURB remains enigmatic, both deletion der ...
... transposase, which was used as evidence for its very early origin [13]. The mudrB major transcript encodes a 23 kDa protein (MURB) that is not similar to any sequences in public database outside maize and its close relatives. Although the precise function of MURB remains enigmatic, both deletion der ...
What`s in a Genotype? - CEUR Workshop Proceedings
... down into reference and variant components, the genomic variation complement can be further decomposed into one or more variant single locus complements, representing the set of all complementary loci where at least one variant exists (Figure 1B). This complement is typically a pair of sequences for ...
... down into reference and variant components, the genomic variation complement can be further decomposed into one or more variant single locus complements, representing the set of all complementary loci where at least one variant exists (Figure 1B). This complement is typically a pair of sequences for ...
MGI
... Diseases are characterized by phenotypes including the order, severity and duration with which they occur. A full model of disease takes into account dimensions of anatomy, time, severity, therapeutic responsiveness, outcomes etc. There is also a probabilistic element to an instance of the disease a ...
... Diseases are characterized by phenotypes including the order, severity and duration with which they occur. A full model of disease takes into account dimensions of anatomy, time, severity, therapeutic responsiveness, outcomes etc. There is also a probabilistic element to an instance of the disease a ...
PDF - Journal of Genomics
... Server was used to annotate the genes, which implements a ‘highest confidence first’ propagation strategy (see methods) and the GLIMMER-3 gene prediction scheme. A total of 593 putative protein-coding genes and 35 RNAs were identified on the chromosome, as well as 7 and 3 protein-coding genes on the ...
... Server was used to annotate the genes, which implements a ‘highest confidence first’ propagation strategy (see methods) and the GLIMMER-3 gene prediction scheme. A total of 593 putative protein-coding genes and 35 RNAs were identified on the chromosome, as well as 7 and 3 protein-coding genes on the ...
Genomic Databases for Tomato
... worldwide and a model plant of the Solanaceae family. Various biological aspects of tomato, such as carotenoid biosynthesis, hormonal effects, fruit development and pathogenesis, have been investigated with physiological and genetic approaches for a long time (see reviews, e.g., Bramley 2002; Gorgue ...
... worldwide and a model plant of the Solanaceae family. Various biological aspects of tomato, such as carotenoid biosynthesis, hormonal effects, fruit development and pathogenesis, have been investigated with physiological and genetic approaches for a long time (see reviews, e.g., Bramley 2002; Gorgue ...
Application of whole genome sequencing to fully characterise
... survey periods, and to generate data that can be used to identify the potential sources for transmission of the pathogen to humans, by comparison with isolates from the environment, wildlife and farm animals. WGS of all available Campylobacter isolates from the IID1 and IID2 studies was carried out ...
... survey periods, and to generate data that can be used to identify the potential sources for transmission of the pathogen to humans, by comparison with isolates from the environment, wildlife and farm animals. WGS of all available Campylobacter isolates from the IID1 and IID2 studies was carried out ...
papaya X-specific BACs monoica corresponding
... monoecious, having separate male and female flowers on a single individual, with the lack of sexual dimorphism, signifying the absence of sex chromosomes. The genome size of monoica is 626Mb compared to the 372Mb genome of papaya, signifying expansion in monoica since the divergence of these species ...
... monoecious, having separate male and female flowers on a single individual, with the lack of sexual dimorphism, signifying the absence of sex chromosomes. The genome size of monoica is 626Mb compared to the 372Mb genome of papaya, signifying expansion in monoica since the divergence of these species ...
Genomic data mining
... WormBase [8], among many others). This data ‘‘warehouse’’ was originally developed for Ensembl, creating EnsMart [9,10]. From there, it was first deployed across the European Bioinformatics Institute (EBI), and now it has become a joint project between EBI and Cold Spring Harbor Laboratory (CSHL). T ...
... WormBase [8], among many others). This data ‘‘warehouse’’ was originally developed for Ensembl, creating EnsMart [9,10]. From there, it was first deployed across the European Bioinformatics Institute (EBI), and now it has become a joint project between EBI and Cold Spring Harbor Laboratory (CSHL). T ...
Gill: Human Disease Genomics
... Consumer Genomics 1 Collect scientific literature about all structural variant correlations with human disease & traits. 2 Genotype customers for as many informative loci as is commercially viable. 3 Offer counseling for your findings, and their meaning. 4 Ask customers to phenotype themselves. 5 D ...
... Consumer Genomics 1 Collect scientific literature about all structural variant correlations with human disease & traits. 2 Genotype customers for as many informative loci as is commercially viable. 3 Offer counseling for your findings, and their meaning. 4 Ask customers to phenotype themselves. 5 D ...
PDF - WashU Epigenome Browser
... Visualizes interactions from distant regions and different chromosomes. ...
... Visualizes interactions from distant regions and different chromosomes. ...
MOLECULAR CYTOGENETIC ANALYSES IN WHEAT AND
... genome by means of traditional interspecific hybridisation. The detailed study of the genomic structure of species related to wheat is a basic criterion for efficient gene transfer. The chromosome karyotype of the diploid Aegilops species has been published in the literature, but little information ...
... genome by means of traditional interspecific hybridisation. The detailed study of the genomic structure of species related to wheat is a basic criterion for efficient gene transfer. The chromosome karyotype of the diploid Aegilops species has been published in the literature, but little information ...
Requirements for Human Medical Genome
... The interpretation of MPS data carries the risk of both over-interpretation and underinterpretation. It is possible to falsely attribute pathogenicity to variants when there is insufficient evidence or even evidence indicating the variant is benign. Equally important, it is possible that the laborat ...
... The interpretation of MPS data carries the risk of both over-interpretation and underinterpretation. It is possible to falsely attribute pathogenicity to variants when there is insufficient evidence or even evidence indicating the variant is benign. Equally important, it is possible that the laborat ...
—1— User Guide © Copyright 2009 Robert C. Edgar, all rights
... (inter) once for the entire genome, then the intra-chromosome simulator (intra) once for each chromosome. This process is called a cycle. The output from one cycle can be used as input to another cycle. It is generally better to run many short cycles rather than one or a few long cycles as longer cy ...
... (inter) once for the entire genome, then the intra-chromosome simulator (intra) once for each chromosome. This process is called a cycle. The output from one cycle can be used as input to another cycle. It is generally better to run many short cycles rather than one or a few long cycles as longer cy ...
Potential of promotion of alleles by genome editing for improving
... • African Swine Fever – major disease risk in pig production • Pig 26 – Used genome editing to make a single base deletion in the gene that controls susceptibility to ASF ...
... • African Swine Fever – major disease risk in pig production • Pig 26 – Used genome editing to make a single base deletion in the gene that controls susceptibility to ASF ...
Human Genome Project
The Human Genome Project (HGP) is an international scientific research project with the goal of determining the sequence of chemical base pairs which make up human DNA, and of identifying and mapping all of the genes of the human genome from both a physical and functional standpoint. It remains the world's largest collaborative biological project. The project was proposed and funded by the US government; planning started in 1984, got underway in 1990, and was declared complete in 2003. A parallel project was conducted outside of government by the Celera Corporation, or Celera Genomics, which was formally launched in 1998. Most of the government-sponsored sequencing was performed in twenty universities and research centers in the United States, the United Kingdom, Japan, France, Germany, and China.The Human Genome Project originally aimed to map the nucleotides contained in a human haploid reference genome (more than three billion). The ""genome"" of any given individual is unique; mapping ""the human genome"" involves sequencing multiple variations of each gene.